Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010532.1

Orthogroup ID

OG0002794

Physical Location & Seq

Genomic Coordinates Reverse (-)

27652 .. 29169

Gene Structure 1518 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010532.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ctgactgctggaccacatatatcatccttcagattagcatcttttccttttgggattgtttatcatgcatttcatgtctacttctttacccagattccgaagaaaggaaagatctattctgtgaatgaagggaatgctaagaactgggatggtccaacagctaagtatgtggagaaatgcaaattcccaacagatggttcttcaccaaagtctctaagatacattggaagcatggttgctgatgttcatcgcacattgctttatggaggtatctttttgtaccctgctgataagaagagtccaaacggaaaactccgtgttctctacgaagtcttccccatgtcattcttgctggaacaggcgggaggtcaggccttcactggcaaggaacgggcccttgacctggttccaaagaagatacatgagcggtctccaatattccttggcagctatgatgatgtagaggagatcaaggcactctacgctgctgaagaaaagaaggaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005975 GO:0005976 GO:0005982 GO:0005983 GO:0005984 GO:0005985 GO:0005986 GO:0005996 GO:0006000 GO:0006002 GO:0006006 GO:0006073 GO:0006094 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009058 GO:0009251 GO:0009311 GO:0009312 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009746 GO:0009750 GO:0009987 GO:0010033 GO:0015979 GO:0016051 GO:0016052 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019203 GO:0019318 GO:0019319 GO:0019637 GO:0030388 GO:0033993 GO:0034284 GO:0034637 GO:0042132 GO:0042221 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046351 GO:0046364 GO:0050308 GO:0050896 GO:0071704 GO:0097305 GO:1901135 GO:1901575 GO:1901576 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00010 ko00030 ko00051 ko00680 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko04152 ko04910 map00010 map00030 map00051 map00680 map00710 map01100 map01110 map01120 map01130 map01200 map04152 map04910

Pfam Domains

Protein Families

FBPase

Protein Analysis

168

Amino Acids

18.87

Weight (kDa)

9.16

Isoelectric Point (pI)

36.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002794)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G43670
fragaria_vesca	FvH4_2g13890 FvH4_2g13890 FvH4_2g13890 FvH4_2g13890 FvH4_2g13890 FvH4_2g13890
malus_domestica	MD05G1023900.v1.1 MD10G1024400.v1.1 MD15G1416100.v1.1
prunus_persica	Prupe.8G028300_v2.0.a1 Prupe.8G028300_v2.0.a1
pyrus_communis	pycom05g01530 pycom10g01620
rosa_chinensis	RchiOBHm_Chr6g0275641 RchiOBHm_Chr7g0225171 RchiOBHm_Chr7g0225291 RchiOBHm_Chr7g0225311
rosa_laevigata	RLG00000001840 RLG00000013451
rosa_multiflora	Rmu_sc0002011.1_g000002 Rmu_sc0005043.1_g000001 Rmu_sc0010532.1_g000007
rosa_roxburghii	Rroxscaffold_3G00234160 Rroxscaffold_7G00193110
rosa_rugosa	Rorug06G0094600 Rorug06G0094700 Rorug07G0227700 Rorug07G0227700
rosa_samantha	Rh6AG207100 Rh6BG209800 Rh6CG213000 Rh6DG202900 Rh7AG374800 Rh7BG362700 Rh7CG394500
rosa_wichuraiana	Rw0G021340 Rw6G017950 Rw7G031530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	194
AccBSI	CCGCTC	1 cut(s)	427
AccI	GTMKAC	1 cut(s)	78
AciI	CCGC	2 cut(s)	362, 427
AcsI	RAATTY	1 cut(s)	182
AcuI	CTGAAG	1 cut(s)	13
AfaI	GTAC	1 cut(s)	281
AfiI	CCNNNNNNNGG	3 cut(s)	104, 194, 403
AjnI	CCWGG	1 cut(s)	402
AjuI	GAANNNNNNNTTGG	2 cut(s)	181, 213
AluBI	AGCT	2 cut(s)	161, 450
AluI	AGCT	2 cut(s)	161, 450
Alw26I	GTCTC	2 cut(s)	216, 435
AoxI	GGCC	2 cut(s)	372, 393
ApaI	GGGCCC	1 cut(s)	397
ApeKI	GCWGC	2 cut(s)	447, 485
ApoI	RAATTY	1 cut(s)	182
AspS9I	GGNCC	4 cut(s)	11, 152, 393, 394
AsuHPI	GGTGA	1 cut(s)	195
AvaII	GGWCC	2 cut(s)	11, 152
BaeGI	GKGCMC	1 cut(s)	397
BanII	GRGCYC	1 cut(s)	397
BbsI	GAAGAC	1 cut(s)	325
BbvI	GCAGC	2 cut(s)	459, 472
BccI	CCATC	2 cut(s)	143, 188
BciT130I	CCWGG	1 cut(s)	404
BcoDI	GTCTC	2 cut(s)	216, 435
BglII	AGATCT	1 cut(s)	111
BisI	GCNGC	2 cut(s)	448, 486
BlsI	GCNGC	2 cut(s)	449, 487
Bme1390I	CCNGG	1 cut(s)	404
Bme18I	GGWCC	2 cut(s)	11, 152
BmgT120I	GGNCC	4 cut(s)	11, 152, 393, 394
BmiI	GGNNCC	2 cut(s)	395, 408
BmrFI	CCNGG	1 cut(s)	404
BmrI	ACTGGG	1 cut(s)	154
BmsI	GCATC	1 cut(s)	47
BmuI	ACTGGG	1 cut(s)	154
BpiI	GAAGAC	1 cut(s)	325
BsaBI	GATNNNNATC	2 cut(s)	37, 246
BsaI	GGTCTC	1 cut(s)	435
BsaJI	CCNNGG	1 cut(s)	442
Bsc4I	CCNNNNNNNGG	3 cut(s)	104, 194, 403
Bse1I	ACTGG	2 cut(s)	149, 385
Bse3DI	GCAATG	1 cut(s)	254
Bse8I	GATNNNNATC	2 cut(s)	37, 246
BseBI	CCWGG	1 cut(s)	404
BseDI	CCNNGG	1 cut(s)	442
BseGI	GGATG	2 cut(s)	23, 154
BseJI	GATNNNNATC	2 cut(s)	37, 246
BseLI	CCNNNNNNNGG	3 cut(s)	104, 194, 403
BseMI	GCAATG	1 cut(s)	254
BseNI	ACTGG	2 cut(s)	149, 385
BseRI	GAGGAG	1 cut(s)	479
BseSI	GKGCMC	1 cut(s)	397
BseXI	GCAGC	2 cut(s)	459, 472
BshFI	GGCC	2 cut(s)	374, 395
BslI	CCNNNNNNNGG	3 cut(s)	104, 194, 403
BsmAI	GTCTC	2 cut(s)	216, 435
BsmI	GAATGC	1 cut(s)	139
BsnI	GGCC	2 cut(s)	374, 395
Bso31I	GGTCTC	1 cut(s)	435
Bsp120I	GGGCCC	1 cut(s)	393
Bsp1286I	GDGCHC	1 cut(s)	397
Bsp143I	GATC	2 cut(s)	111, 468
BspACI	CCGC	2 cut(s)	362, 427
BspANI	GGCC	2 cut(s)	374, 395
BspLI	GGNNCC	2 cut(s)	395, 408
BspTNI	GGTCTC	1 cut(s)	435
BsrBI	CCGCTC	1 cut(s)	427
BsrDI	GCAATG	1 cut(s)	254
BsrI	ACTGG	2 cut(s)	149, 385
BssECI	CCNNGG	1 cut(s)	442
BssMI	GATC	2 cut(s)	111, 468
BssT1I	CCWWGG	1 cut(s)	442
Bst2UI	CCWGG	1 cut(s)	404
Bst6I	CTCTTC	1 cut(s)	290
BstDEI	CTNAG	3 cut(s)	138, 162, 215
BstF5I	GGATG	2 cut(s)	23, 154
BstKTI	GATC	2 cut(s)	114, 471
BstMAI	GTCTC	2 cut(s)	216, 435
BstMBI	GATC	2 cut(s)	111, 468
BstMWI	GCNNNNNNNGC	1 cut(s)	482
BstNI	CCWGG	1 cut(s)	404
BstSCI	CCNGG	1 cut(s)	402
BstSLI	GKGCMC	1 cut(s)	397
BstV1I	GCAGC	2 cut(s)	459, 472
BstV2I	GAAGAC	1 cut(s)	325
BstX2I	RGATCY	1 cut(s)	111
BstYI	RGATCY	1 cut(s)	111
BsuRI	GGCC	2 cut(s)	374, 395
BtgZI	GCGATG	1 cut(s)	233
BtsCI	GGATG	2 cut(s)	23, 154
BtsIMutI	CAGTG	1 cut(s)	378
Cfr13I	GGNCC	4 cut(s)	11, 152, 393, 394
CsiI	ACCWGGT	1 cut(s)	402
Csp6I	GTAC	1 cut(s)	280
CviAII	CATG	5 cut(s)	65, 74, 232, 340, 422
CviJI	RGCY	4 cut(s)	161, 374, 395, 450
CviKI_1	RGCY	4 cut(s)	161, 374, 395, 450
CviQI	GTAC	1 cut(s)	280
DdeI	CTNAG	3 cut(s)	138, 162, 215
DpnI	GATC	2 cut(s)	113, 470
DpnII	GATC	2 cut(s)	111, 468
Eam1104I	CTCTTC	1 cut(s)	290
EarI	CTCTTC	1 cut(s)	290
Eco130I	CCWWGG	1 cut(s)	442
Eco147I	AGGCCT	1 cut(s)	374
Eco24I	GRGCYC	1 cut(s)	397
Eco31I	GGTCTC	1 cut(s)	435
Eco47I	GGWCC	2 cut(s)	11, 152
Eco57I	CTGAAG	1 cut(s)	13
EcoO109I	RGGNCCY	1 cut(s)	394
EcoRII	CCWGG	1 cut(s)	402
EcoT14I	CCWWGG	1 cut(s)	442
EcoT22I	ATGCAT	1 cut(s)	70
EcoT38I	GRGCYC	1 cut(s)	397
ErhI	CCWWGG	1 cut(s)	442
FaeI	CATG	5 cut(s)	68, 77, 235, 343, 425
FatI	CATG	5 cut(s)	64, 73, 231, 339, 421
FauI	CCCGC	1 cut(s)	355
FblI	GTMKAC	1 cut(s)	78
Fnu4HI	GCNGC	2 cut(s)	448, 486
FokI	GGATG	2 cut(s)	10, 161
FriOI	GRGCYC	1 cut(s)	397
Fsp4HI	GCNGC	2 cut(s)	448, 486
GluI	GCNGC	2 cut(s)	448, 486
HaeIII	GGCC	2 cut(s)	374, 395
Hin1II	CATG	5 cut(s)	68, 77, 235, 343, 425
HinfI	GANTC	2 cut(s)	94, 298
HphI	GGTGA	1 cut(s)	195
Hpy166II	GTNNAC	1 cut(s)	79
Hpy188I	TCNGA	2 cut(s)	32, 99
Hpy8I	GTNNAC	1 cut(s)	79
HpyAV	CCTTC	4 cut(s)	37, 122, 385, 493
HpyCH4V	TGCA	2 cut(s)	68, 180
HpyF10VI	GCNNNNNNNGC	1 cut(s)	482
HpyF3I	CTNAG	3 cut(s)	138, 162, 215
Hsp92II	CATG	5 cut(s)	68, 77, 235, 343, 425
Kzo9I	GATC	2 cut(s)	111, 468
LpnPI	CCDG	9 cut(s)	104, 130, 297, 338, 344, 356, 366, 389, 416
Lsp1109I	GCAGC	2 cut(s)	459, 472
LweI	GCATC	1 cut(s)	47
MabI	ACCWGGT	1 cut(s)	402
MalI	GATC	2 cut(s)	113, 470
MbiI	CCGCTC	1 cut(s)	427
MboI	GATC	2 cut(s)	111, 468
MboII	GAAGA	6 cut(s)	112, 192, 307, 325, 427, 503
MflI	RGATCY	1 cut(s)	111
MhlI	GDGCHC	1 cut(s)	397
MluCI	AATT	1 cut(s)	182
MlyI	GAGTC	1 cut(s)	307
MmeI	TCCRAC	1 cut(s)	179
MnlI	CCTC	3 cut(s)	260, 359, 457
Mph1103I	ATGCAT	1 cut(s)	70
MspR9I	CCNGG	1 cut(s)	404
Mva1269I	GAATGC	1 cut(s)	139
MvaI	CCWGG	1 cut(s)	404
MwoI	GCNNNNNNNGC	1 cut(s)	482
NdeII	GATC	2 cut(s)	111, 468
NlaIII	CATG	5 cut(s)	68, 77, 235, 343, 425
NlaIV	GGNNCC	2 cut(s)	395, 408
NsiI	ATGCAT	1 cut(s)	70
PceI	AGGCCT	1 cut(s)	374
PctI	GAATGC	1 cut(s)	139
PfeI	GAWTC	1 cut(s)	94
PflMI	CCANNNNNTGG	1 cut(s)	194
PkrI	GCNGC	2 cut(s)	449, 487
PleI	GAGTC	1 cut(s)	306
PpsI	GAGTC	1 cut(s)	306
Psp6I	CCWGG	1 cut(s)	402
PspGI	CCWGG	1 cut(s)	402
PspN4I	GGNNCC	2 cut(s)	395, 408
PspOMI	GGGCCC	1 cut(s)	393
PspPI	GGNCC	4 cut(s)	11, 152, 393, 394
PsuI	RGATCY	1 cut(s)	111
RsaI	GTAC	1 cut(s)	281
RsaNI	GTAC	1 cut(s)	280
SatI	GCNGC	2 cut(s)	448, 486
Sau3AI	GATC	2 cut(s)	111, 468
Sau96I	GGNCC	4 cut(s)	11, 152, 393, 394
SchI	GAGTC	1 cut(s)	307
ScrFI	CCNGG	1 cut(s)	404
SduI	GDGCHC	1 cut(s)	397
SetI	ASST	5 cut(s)	163, 271, 370, 405, 452
SexAI	ACCWGGT	1 cut(s)	402
SfaNI	GCATC	1 cut(s)	47
SinI	GGWCC	2 cut(s)	11, 152
Sse9I	AATT	1 cut(s)	182
SseBI	AGGCCT	1 cut(s)	374
SsiI	CCGC	2 cut(s)	362, 427
SspI	AATATT	1 cut(s)	438
StuI	AGGCCT	1 cut(s)	374
StyD4I	CCNGG	1 cut(s)	402
StyI	CCWWGG	1 cut(s)	442
TasI	AATT	1 cut(s)	182
TfiI	GAWTC	1 cut(s)	94
TscAI	CASTG	1 cut(s)	385
TseI	GCWGC	2 cut(s)	447, 485
TspDTI	ATGAA	3 cut(s)	62, 141, 236
TspGWI	ACGGA	2 cut(s)	305, 321
TspRI	CASTG	1 cut(s)	385
Van91I	CCANNNNNTGG	1 cut(s)	194
VpaK11BI	GGWCC	2 cut(s)	11, 152
XapI	RAATTY	1 cut(s)	182
XmiI	GTMKAC	1 cut(s)	78
Zsp2I	ATGCAT	1 cut(s)	70

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.