Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002794

Physical Location & Seq

Genomic Coordinates Forward (+)

47898853 .. 47902303

Gene Structure 3451 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ20179

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGGATCACGCTGCTGAAGCTCATAGAACTGACCTGATGACCATCACTAGTTTTGTTCTGAATGAGCAGTCCAAGTATCCTGAGGCATGCGGTGATTTCACCATCTTACTCAACCACATTGTTCTTGGCTGCAAATTTGTCTGCTCCACTGTTAGCAAGGCCGGCCTTGCAAAAGTATTTGGACTTGCTGGAGAGATGAATGTTCAGGGTGAAAAACAAAAGAAATTGGATGTGCTTTCAAATGAAGTTTTCATCAAGGCATTAATTAGCAGTGGTCGCACTTGTATTCTTGTTTCTGAAAAGGATGAAGAGGCTACATTTGTGGAGCCATCAAAGCGCGGAAGGTACATTGTTGTTTTTGATCCATTGGATGGATCCTCTAACATCGACAGTGGTGTTTCCGTTGGAACTATATTTGGGATTTACATGGTGAAAGATAAGGAAAATCCGACTCTTGATGATGTACTGCGCCCTGGGAGTAATATGGTAGCTGCTGGTTATTGCATGTATGGAAGCTCTTGCACGCTGGTGCTTAGTACTGGAAATGGAGTCAATGGCTTCACACTTGATCCATCCCTTGGGGAATTTATATTAACCCACCCTAATATTAGGATTCCAAACAGGGGAAAGATCTACTCAGTAAATGAAGGAAATGCAGAAAACTGGGATATCCAAACTAACATCTTGGTTGCTGATGTCCACAGAACATTATTATATGGTGGCATCTTTTTGTACCCTGCCGAGAAGAAAAGCCCAAATGGGAAACTACGAGTCCTTTATGAAGTTTTCCCAATGTCCTACCTAGTTGAGCAAGCAGGAGGGCAATCTTTTACTGGCAAGAAGCGGGCACTTGATGTGGTTCCAGAGAAGATACATGAGAGGTCCCCAGTATTCCTTGGAAGCTATGACGATGTCGAGGAAATTAAACGACTTTTTAAGGCTACTTATGACAGGGCCACCTCGGATTCTTCCTCTTCAATTCCGAGGTGGTTTGGTGGCTCGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00010 ko00030 ko00051 ko00680 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko04152 ko04910 map00010 map00030 map00051 map00680 map00710 map01100 map01110 map01120 map01130 map01200 map04152 map04910

Pfam Domains

Protein Families

FBPase

Protein Analysis

335

Amino Acids

36.74

Weight (kDa)

5.77

Isoelectric Point (pI)

44.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FBPase	PF00316	13 - 201	2e-81	Fructose-1-6-bisphosphatase, N-terminal domain
FBPase_C	PF18913	229 - 311	1.1e-35	Fructose-1-6-bisphosphatase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002794)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G43670
fragaria_vesca	FvH4_2g13890 FvH4_2g13890 FvH4_2g13890 FvH4_2g13890 FvH4_2g13890 FvH4_2g13890
malus_domestica	MD05G1023900.v1.1 MD10G1024400.v1.1 MD15G1416100.v1.1
prunus_persica	Prupe.8G028300_v2.0.a1 Prupe.8G028300_v2.0.a1
pyrus_communis	pycom05g01530 pycom10g01620
rosa_chinensis	RchiOBHm_Chr6g0275641 RchiOBHm_Chr7g0225171 RchiOBHm_Chr7g0225291 RchiOBHm_Chr7g0225311
rosa_laevigata	RLG00000001840 RLG00000013451
rosa_multiflora	Rmu_sc0002011.1_g000002 Rmu_sc0005043.1_g000001 Rmu_sc0010532.1_g000007
rosa_roxburghii	Rroxscaffold_3G00234160 Rroxscaffold_7G00193110
rosa_rugosa	Rorug06G0094600 Rorug06G0094700 Rorug07G0227700 Rorug07G0227700
rosa_samantha	Rh6AG207100 Rh6BG209800 Rh6CG213000 Rh6DG202900 Rh7AG374800 Rh7BG362700 Rh7CG394500
rosa_wichuraiana	Rw0G021340 Rw6G017950 Rw7G031530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	371, 578
AccII	CGCG	1 cut(s)	339
AciI	CCGC	3 cut(s)	90, 339, 844
AclWI	GGATC	5 cut(s)	12, 356, 369, 382, 563
AcsI	RAATTY	2 cut(s)	134, 584
AcuI	CTGAAG	1 cut(s)	36
AfaI	GTAC	4 cut(s)	347, 465, 538, 734
AfiI	CCNNNNNNNGG	3 cut(s)	371, 578, 623
AgsI	TTSAA	2 cut(s)	240, 978
AhlI	ACTAGT	1 cut(s)	47
AjnI	CCWGG	1 cut(s)	472
AleI	CACNNNNGTG	1 cut(s)	527
AluBI	AGCT	4 cut(s)	20, 491, 516, 903
AluI	AGCT	4 cut(s)	20, 491, 516, 903
AlwI	GGATC	5 cut(s)	12, 356, 369, 382, 563
AoxI	GGCC	3 cut(s)	159, 163, 954
ApeKI	GCWGC	3 cut(s)	11, 129, 491
ApoI	RAATTY	2 cut(s)	134, 584
AseI	ATTAAT	1 cut(s)	263
AspLEI	GCGC	2 cut(s)	339, 471
AspS9I	GGNCC	2 cut(s)	882, 954
AsuHPI	GGTGA	4 cut(s)	91, 104, 221, 442
AvaII	GGWCC	1 cut(s)	882
AxyI	CCTNAGG	1 cut(s)	81
BaeGI	GKGCMC	1 cut(s)	850
BamHI	GGATCC	1 cut(s)	374
BbvI	GCAGC	2 cut(s)	116, 478
BccI	CCATC	5 cut(s)	50, 110, 337, 365, 580
BciT130I	CCWGG	1 cut(s)	474
BciVI	GTATCC	1 cut(s)	87
BcuI	ACTAGT	1 cut(s)	47
BfaI	CTAG	2 cut(s)	48, 803
BfuI	GTATCC	1 cut(s)	87
BglII	AGATCT	1 cut(s)	630
BisI	GCNGC	3 cut(s)	12, 130, 492
BlsI	GCNGC	3 cut(s)	13, 131, 493
BmcAI	AGTACT	1 cut(s)	538
Bme1390I	CCNGG	1 cut(s)	474
Bme18I	GGWCC	1 cut(s)	882
BmgT120I	GGNCC	2 cut(s)	882, 954
BmiI	GGNNCC	4 cut(s)	327, 376, 861, 884
BmrFI	CCNGG	1 cut(s)	474
BmrI	ACTGGG	2 cut(s)	673, 881
BmsI	GCATC	1 cut(s)	732
BmuI	ACTGGG	2 cut(s)	673, 881
BpmI	CTGGAG	1 cut(s)	210
BsaBI	GATNNNNATC	1 cut(s)	41
BsaJI	CCNNGG	6 cut(s)	472, 473, 577, 895, 960, 983
Bsc4I	CCNNNNNNNGG	3 cut(s)	371, 578, 623
Bse118I	RCCGGY	1 cut(s)	161
Bse1I	ACTGG	4 cut(s)	544, 668, 838, 887
Bse21I	CCTNAGG	1 cut(s)	81
Bse8I	GATNNNNATC	1 cut(s)	41
BseBI	CCWGG	1 cut(s)	474
BseDI	CCNNGG	6 cut(s)	472, 473, 577, 895, 960, 983
BseGI	GGATG	4 cut(s)	235, 310, 376, 572
BseJI	GATNNNNATC	1 cut(s)	41
BseLI	CCNNNNNNNGG	3 cut(s)	371, 578, 623
BseMII	CTCAG	2 cut(s)	72, 651
BseNI	ACTGG	4 cut(s)	544, 668, 838, 887
BseSI	GKGCMC	1 cut(s)	850
BseXI	GCAGC	2 cut(s)	116, 478
Bsh1236I	CGCG	1 cut(s)	339
BshFI	GGCC	3 cut(s)	161, 165, 956
BsiSI	CCGG	1 cut(s)	162
BslFI	GGGAC	1 cut(s)	868
BslI	CCNNNNNNNGG	3 cut(s)	371, 578, 623
BsmFI	GGGAC	1 cut(s)	868
BsnI	GGCC	3 cut(s)	161, 165, 956
Bsp1286I	GDGCHC	1 cut(s)	850
Bsp143I	GATC	5 cut(s)	4, 361, 374, 568, 630
BspACI	CCGC	3 cut(s)	90, 339, 844
BspANI	GGCC	3 cut(s)	161, 165, 956
BspCNI	CTCAG	2 cut(s)	73, 650
BspFNI	CGCG	1 cut(s)	339
BspLI	GGNNCC	4 cut(s)	327, 376, 861, 884
BspPI	GGATC	5 cut(s)	12, 356, 369, 382, 563
BsrFI	RCCGGY	1 cut(s)	161
BsrI	ACTGG	4 cut(s)	544, 668, 838, 887
BssAI	RCCGGY	1 cut(s)	161
BssECI	CCNNGG	6 cut(s)	472, 473, 577, 895, 960, 983
BssMI	GATC	5 cut(s)	4, 361, 374, 568, 630
BssT1I	CCWWGG	2 cut(s)	577, 895
Bst2UI	CCWGG	1 cut(s)	474
Bst4CI	ACNGT	2 cut(s)	151, 392
Bst6I	CTCTTC	2 cut(s)	303, 979
BstC8I	GCNNGC	5 cut(s)	88, 163, 524, 813, 846
BstDEI	CTNAG	3 cut(s)	81, 533, 637
BstF5I	GGATG	4 cut(s)	235, 310, 376, 572
BstFNI	CGCG	1 cut(s)	339
BstHHI	GCGC	2 cut(s)	339, 471
BstKTI	GATC	5 cut(s)	7, 364, 377, 571, 633
BstMBI	GATC	5 cut(s)	4, 361, 374, 568, 630
BstMWI	GCNNNNNNNGC	5 cut(s)	17, 162, 167, 276, 334
BstNI	CCWGG	1 cut(s)	474
BstNSI	RCATGY	2 cut(s)	90, 508
BstSCI	CCNGG	1 cut(s)	472
BstSLI	GKGCMC	1 cut(s)	850
BstUI	CGCG	1 cut(s)	339
BstV1I	GCAGC	2 cut(s)	116, 478
BstX2I	RGATCY	2 cut(s)	374, 630
BstYI	RGATCY	2 cut(s)	374, 630
Bsu36I	CCTNAGG	1 cut(s)	81
BsuI	GTATCC	1 cut(s)	87
BsuRI	GGCC	3 cut(s)	161, 165, 956
BtsCI	GGATG	4 cut(s)	235, 310, 376, 572
BtsI	GCAGTG	1 cut(s)	277
BtsIMutI	CAGTG	3 cut(s)	147, 277, 397
Cac8I	GCNNGC	5 cut(s)	88, 163, 524, 813, 846
CfoI	GCGC	2 cut(s)	339, 471
Cfr10I	RCCGGY	1 cut(s)	161
Cfr13I	GGNCC	2 cut(s)	882, 954
Csp6I	GTAC	4 cut(s)	346, 464, 537, 733
CviAII	CATG	4 cut(s)	87, 427, 505, 875
CviQI	GTAC	4 cut(s)	346, 464, 537, 733
DdeI	CTNAG	3 cut(s)	81, 533, 637
DpnI	GATC	5 cut(s)	6, 363, 376, 570, 632
DpnII	GATC	5 cut(s)	4, 361, 374, 568, 630
Eam1104I	CTCTTC	2 cut(s)	303, 979
EarI	CTCTTC	2 cut(s)	303, 979
Eco130I	CCWWGG	2 cut(s)	577, 895
Eco32I	GATATC	1 cut(s)	670
Eco47I	GGWCC	1 cut(s)	882
Eco57I	CTGAAG	1 cut(s)	36
Eco81I	CCTNAGG	1 cut(s)	81
EcoO109I	RGGNCCY	1 cut(s)	882
EcoRII	CCWGG	1 cut(s)	472
EcoRV	GATATC	1 cut(s)	670
EcoT14I	CCWWGG	2 cut(s)	577, 895
ErhI	CCWWGG	2 cut(s)	577, 895
FaeI	CATG	4 cut(s)	90, 430, 508, 878
FaqI	GGGAC	1 cut(s)	868
FatI	CATG	4 cut(s)	86, 426, 504, 874
FauI	CCCGC	1 cut(s)	837
Fnu4HI	GCNGC	3 cut(s)	12, 130, 492
FokI	GGATG	4 cut(s)	242, 317, 383, 559
FseI	GGCCGGCC	1 cut(s)	165
Fsp4HI	GCNGC	3 cut(s)	12, 130, 492
FspBI	CTAG	2 cut(s)	48, 803
GlaI	GCGC	2 cut(s)	338, 470
GluI	GCNGC	3 cut(s)	12, 130, 492
GsuI	CTGGAG	1 cut(s)	210
HaeIII	GGCC	3 cut(s)	161, 165, 956
HapII	CCGG	1 cut(s)	162
HhaI	GCGC	2 cut(s)	339, 471
Hin1II	CATG	4 cut(s)	90, 430, 508, 878
Hin6I	GCGC	2 cut(s)	337, 469
HinP1I	GCGC	2 cut(s)	337, 469
HinfI	GANTC	5 cut(s)	451, 549, 613, 771, 965
HpaII	CCGG	1 cut(s)	162
HphI	GGTGA	4 cut(s)	91, 104, 221, 442
Hpy166II	GTNNAC	1 cut(s)	700
Hpy188I	TCNGA	5 cut(s)	60, 298, 450, 964, 984
Hpy188III	TCNNGA	3 cut(s)	80, 455, 863
Hpy8I	GTNNAC	1 cut(s)	700
HpyAV	CCTTC	2 cut(s)	336, 641
HpyCH4III	ACNGT	2 cut(s)	151, 392
HpyCH4V	TGCA	5 cut(s)	132, 170, 504, 522, 656
HpyF10VI	GCNNNNNNNGC	5 cut(s)	17, 162, 167, 276, 334
HpyF3I	CTNAG	3 cut(s)	81, 533, 637
Hsp92II	CATG	4 cut(s)	90, 430, 508, 878
HspAI	GCGC	2 cut(s)	337, 469
KroI	GCCGGC	1 cut(s)	161
KroNI	GCCGGC	1 cut(s)	163
Kzo9I	GATC	5 cut(s)	4, 361, 374, 568, 630
LmnI	GCTCC	2 cut(s)	149, 325
Lsp1109I	GCAGC	2 cut(s)	116, 478
LweI	GCATC	1 cut(s)	732
MaeI	CTAG	2 cut(s)	48, 803
MalI	GATC	5 cut(s)	6, 363, 376, 570, 632
MboI	GATC	5 cut(s)	4, 361, 374, 568, 630
MboII	GAAGA	5 cut(s)	320, 757, 880, 960, 966
MflI	RGATCY	2 cut(s)	374, 630
MhlI	GDGCHC	1 cut(s)	850
MluCI	AATT	6 cut(s)	134, 224, 264, 584, 921, 978
MlyI	GAGTC	3 cut(s)	445, 558, 780
MmeI	TCCRAC	2 cut(s)	385, 473
MnlI	CCTC	9 cut(s)	76, 304, 388, 812, 873, 910, 970, 978, 982
MroNI	GCCGGC	1 cut(s)	161
MseI	TTAA	4 cut(s)	263, 593, 924, 936
MslI	CAYNNNNRTG	1 cut(s)	527
MspI	CCGG	1 cut(s)	162
MspR9I	CCNGG	1 cut(s)	474
MvaI	CCWGG	1 cut(s)	474
MvnI	CGCG	1 cut(s)	339
MwoI	GCNNNNNNNGC	5 cut(s)	17, 162, 167, 276, 334
NaeI	GCCGGC	1 cut(s)	163
NdeII	GATC	5 cut(s)	4, 361, 374, 568, 630
NgoMIV	GCCGGC	1 cut(s)	161
NlaIII	CATG	4 cut(s)	90, 430, 508, 878
NlaIV	GGNNCC	4 cut(s)	327, 376, 861, 884
NmeAIII	GCCGAG	1 cut(s)	766
NspI	RCATGY	2 cut(s)	90, 508
OliI	CACNNNNGTG	1 cut(s)	527
PaeI	GCATGC	1 cut(s)	90
PasI	CCCWGGG	1 cut(s)	473
PdiI	GCCGGC	1 cut(s)	163
PfeI	GAWTC	2 cut(s)	613, 965
PflFI	GACNNNGTC	1 cut(s)	911
PflMI	CCANNNNNTGG	2 cut(s)	371, 578
PkrI	GCNGC	3 cut(s)	13, 131, 493
PleI	GAGTC	3 cut(s)	445, 557, 779
PpsI	GAGTC	3 cut(s)	445, 557, 779
PpuMI	RGGWCCY	1 cut(s)	882
PshBI	ATTAAT	1 cut(s)	263
Psp5II	RGGWCCY	1 cut(s)	882
Psp6I	CCWGG	1 cut(s)	472
PspGI	CCWGG	1 cut(s)	472
PspN4I	GGNNCC	4 cut(s)	327, 376, 861, 884
PspPI	GGNCC	2 cut(s)	882, 954
PspPPI	RGGWCCY	1 cut(s)	882
PsuI	RGATCY	2 cut(s)	374, 630
PsyI	GACNNNGTC	1 cut(s)	911
RigI	GGCCGGCC	1 cut(s)	165
RsaI	GTAC	4 cut(s)	347, 465, 538, 734
RsaNI	GTAC	4 cut(s)	346, 464, 537, 733
RseI	CAYNNNNRTG	1 cut(s)	527
SaqAI	TTAA	4 cut(s)	263, 593, 924, 936
SatI	GCNGC	3 cut(s)	12, 130, 492
Sau3AI	GATC	5 cut(s)	4, 361, 374, 568, 630
Sau96I	GGNCC	2 cut(s)	882, 954
ScaI	AGTACT	1 cut(s)	538
SchI	GAGTC	3 cut(s)	445, 558, 780
ScrFI	CCNGG	1 cut(s)	474
SduI	GDGCHC	1 cut(s)	850
SfaNI	GCATC	1 cut(s)	732
SinI	GGWCC	1 cut(s)	882
SmiMI	CAYNNNNRTG	1 cut(s)	527
SpeI	ACTAGT	1 cut(s)	47
SphI	GCATGC	1 cut(s)	90
Sse9I	AATT	6 cut(s)	134, 224, 264, 584, 921, 978
SsiI	CCGC	3 cut(s)	90, 339, 844
SspI	AATATT	1 cut(s)	607
SspMI	CTAG	2 cut(s)	48, 803
StyD4I	CCNGG	1 cut(s)	472
StyI	CCWWGG	2 cut(s)	577, 895
TaaI	ACNGT	2 cut(s)	151, 392
TaqI	TCGA	2 cut(s)	387, 915
TasI	AATT	6 cut(s)	134, 224, 264, 584, 921, 978
TatI	WGTACW	2 cut(s)	463, 536
TfiI	GAWTC	2 cut(s)	613, 965
Tru1I	TTAA	4 cut(s)	263, 593, 924, 936
Tru9I	TTAA	4 cut(s)	263, 593, 924, 936
TscAI	CASTG	3 cut(s)	154, 277, 397
TseI	GCWGC	3 cut(s)	11, 129, 491
TspDTI	ATGAA	6 cut(s)	212, 241, 258, 321, 660, 795
TspGWI	ACGGA	1 cut(s)	391
TspRI	CASTG	3 cut(s)	154, 277, 397
Tth111I	GACNNNGTC	1 cut(s)	911
Van91I	CCANNNNNTGG	2 cut(s)	371, 578
VpaK11BI	GGWCC	1 cut(s)	882
VspI	ATTAAT	1 cut(s)	263
XapI	RAATTY	2 cut(s)	134, 584
XceI	RCATGY	2 cut(s)	90, 508
XcmI	CCANNNNNNNNNTGG	1 cut(s)	122
XspI	CTAG	2 cut(s)	48, 803
ZrmI	AGTACT	1 cut(s)	538

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.