Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00980

Orthogroup ID

OG0002794

Physical Location & Seq

Genomic Coordinates Reverse (-)

16928 .. 20355

Gene Structure 3428 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G021340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGGATCATGCTGCTGAAGCTCATAGAACTGACCTGATGACCATCACTCGTTTTGTTCTGAATGAGCAGTCCAAGCATCCTGAGGCACGCGGTGATTTCACCATCTTGCTCAACCACATAGTTCTCGGCTGCAAATTTGTCTGCTCCGCTGTTAGCAAGGCCGGCCTTGCAAAGCTATTTGGACTTGCTGGGGAGACAAATGTTCAGGGTGAAGAACAAAAGAAATTGGATGTGCTTTCAAATGAAGTTTTCATCAAGGCATTAATTAGCAGTGGTCGCACTGTAAGTTTTGCATTCTTGTTTTCCGAGGAGGATGAAGAGGCTACATTTGTGGAACCATCAAAGCGTGGAAGGTACATTGTTGTTTTTGATCCATTGGATGGATCCTCCAACATCGACTGTGGTGTTTCCATTGGAACTATCTTTGGGATTTACATGGTGAAAGACAAGGAAAATCCAACTCTTGATGATGTATTACGCCCTGGGAGTAATATGGTAGCTGCTGGTTATTGCATGTATGGAAGCTCTTGCATGCTGGTGCTTAGTACTGGAAATGGAGTCAATGGCTTCACACTTGATCCATCCCTTGGGGAATTTATATTAACCCACCCTAATATTAAGATTCCAAACAAGGGAAATATTTACTCAGTAAATGAAGGAAATGCAAAAAACTGGGACAAGCAAACTGCCGAATATGTGGGAAAATGCAAGTTTCCCACAGATGGTTCATCTGCCAAGTCTCTCAGATACATTGGAAGCATGGTTGCTGATGTCCACAGAACATTATTATATGGTGGCATCTTTTTGTACCCTGGCGACAAGAAAAGCCCAAATGGGAAACTACGTTTTCCCATGTCCTATCTAGTTGAGCAAGCAGGAGGGCAATCTTTTACTGGCAAAAAGCGGGCACTTGATGTGGTTCCAGAGAAGATACATGAGAGGTCCCCAATATTCCTTGGAAGCTATGACGATGTCGAGGAAATTAAACGACTTTATAAGGCTACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005975 GO:0005976 GO:0005982 GO:0005983 GO:0005984 GO:0005985 GO:0005986 GO:0005996 GO:0006000 GO:0006002 GO:0006006 GO:0006073 GO:0006094 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009058 GO:0009251 GO:0009311 GO:0009312 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009746 GO:0009750 GO:0009987 GO:0010033 GO:0015979 GO:0016051 GO:0016052 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019203 GO:0019318 GO:0019319 GO:0019637 GO:0030388 GO:0033993 GO:0034284 GO:0034637 GO:0042132 GO:0042221 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046351 GO:0046364 GO:0050308 GO:0050896 GO:0071704 GO:0097305 GO:1901135 GO:1901575 GO:1901576 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00010 ko00030 ko00051 ko00680 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko04152 ko04910 map00010 map00030 map00051 map00680 map00710 map01100 map01110 map01120 map01130 map01200 map04152 map04910

Pfam Domains

Protein Families

FBPase

Protein Analysis

335

Amino Acids

36.75

Weight (kDa)

6.41

Isoelectric Point (pI)

40.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FBPase	PF00316	13 - 204	6.9e-82	Fructose-1-6-bisphosphatase, N-terminal domain
FBPase_C	PF18913	208 - 332	1.2e-44	Fructose-1-6-bisphosphatase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002794)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G43670
fragaria_vesca	FvH4_2g13890 FvH4_2g13890 FvH4_2g13890 FvH4_2g13890 FvH4_2g13890 FvH4_2g13890
malus_domestica	MD05G1023900.v1.1 MD10G1024400.v1.1 MD15G1416100.v1.1
prunus_persica	Prupe.8G028300_v2.0.a1 Prupe.8G028300_v2.0.a1
pyrus_communis	pycom05g01530 pycom10g01620
rosa_chinensis	RchiOBHm_Chr6g0275641 RchiOBHm_Chr7g0225171 RchiOBHm_Chr7g0225291 RchiOBHm_Chr7g0225311
rosa_laevigata	RLG00000001840 RLG00000013451
rosa_multiflora	Rmu_sc0002011.1_g000002 Rmu_sc0005043.1_g000001 Rmu_sc0010532.1_g000007
rosa_roxburghii	Rroxscaffold_3G00234160 Rroxscaffold_7G00193110
rosa_rugosa	Rorug06G0094600 Rorug06G0094700 Rorug07G0227700 Rorug07G0227700
rosa_samantha	Rh6AG207100 Rh6BG209800 Rh6CG213000 Rh6DG202900 Rh7AG374800 Rh7BG362700 Rh7CG394500
rosa_wichuraiana	Rw0G021340 Rw6G017950 Rw7G031530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	996
AccB7I	CCANNNNNTGG	2 cut(s)	380, 587
AccII	CGCG	1 cut(s)	90
AciI	CCGC	3 cut(s)	90, 147, 904
AclWI	GGATC	5 cut(s)	12, 365, 378, 391, 572
AcsI	RAATTY	2 cut(s)	134, 593
AcuI	CTGAAG	1 cut(s)	36
AdeI	CACNNNGTG	1 cut(s)	92
AfaI	GTAC	3 cut(s)	356, 547, 809
AfiI	CCNNNNNNNGG	4 cut(s)	380, 587, 632, 722
AgsI	TTSAA	1 cut(s)	240
AjnI	CCWGG	2 cut(s)	481, 811
AluBI	AGCT	5 cut(s)	20, 175, 500, 525, 963
AluI	AGCT	5 cut(s)	20, 175, 500, 525, 963
Alw26I	GTCTC	2 cut(s)	188, 744
AlwI	GGATC	5 cut(s)	12, 365, 378, 391, 572
AoxI	GGCC	2 cut(s)	159, 163
ApeKI	GCWGC	3 cut(s)	11, 129, 500
ApoI	RAATTY	2 cut(s)	134, 593
AseI	ATTAAT	1 cut(s)	263
AspS9I	GGNCC	1 cut(s)	942
AsuHPI	GGTGA	4 cut(s)	91, 104, 221, 451
AvaII	GGWCC	1 cut(s)	942
AxyI	CCTNAGG	1 cut(s)	81
BaeGI	GKGCMC	1 cut(s)	910
BamHI	GGATCC	1 cut(s)	383
BbvI	GCAGC	2 cut(s)	116, 487
BccI	CCATC	6 cut(s)	50, 110, 346, 374, 589, 716
BciT130I	CCWGG	2 cut(s)	483, 813
BcoDI	GTCTC	2 cut(s)	188, 744
BfaI	CTAG	1 cut(s)	863
BisI	GCNGC	3 cut(s)	12, 130, 501
BlsI	GCNGC	3 cut(s)	13, 131, 502
BmcAI	AGTACT	1 cut(s)	547
Bme1390I	CCNGG	2 cut(s)	483, 813
Bme18I	GGWCC	1 cut(s)	942
BmgT120I	GGNCC	1 cut(s)	942
BmiI	GGNNCC	4 cut(s)	336, 385, 921, 944
BmrFI	CCNGG	2 cut(s)	483, 813
BmrI	ACTGGG	1 cut(s)	682
BmsI	GCATC	2 cut(s)	85, 807
BmuI	ACTGGG	1 cut(s)	682
BsaBI	GATNNNNATC	1 cut(s)	41
BsaJI	CCNNGG	6 cut(s)	306, 481, 482, 586, 811, 955
Bsc4I	CCNNNNNNNGG	4 cut(s)	380, 587, 632, 722
Bse118I	RCCGGY	1 cut(s)	161
Bse1I	ACTGG	3 cut(s)	553, 677, 898
Bse21I	CCTNAGG	1 cut(s)	81
Bse8I	GATNNNNATC	1 cut(s)	41
BseBI	CCWGG	2 cut(s)	483, 813
BseDI	CCNNGG	6 cut(s)	306, 481, 482, 586, 811, 955
BseGI	GGATG	5 cut(s)	76, 235, 319, 385, 581
BseJI	GATNNNNATC	1 cut(s)	41
BseLI	CCNNNNNNNGG	4 cut(s)	380, 587, 632, 722
BseMII	CTCAG	3 cut(s)	72, 660, 757
BseNI	ACTGG	3 cut(s)	553, 677, 898
BseRI	GAGGAG	1 cut(s)	323
BseSI	GKGCMC	1 cut(s)	910
BseXI	GCAGC	2 cut(s)	116, 487
BseYI	CCCAGC	1 cut(s)	188
Bsh1236I	CGCG	1 cut(s)	90
BshFI	GGCC	2 cut(s)	161, 165
BsiSI	CCGG	1 cut(s)	162
BslFI	GGGAC	2 cut(s)	689, 928
BslI	CCNNNNNNNGG	4 cut(s)	380, 587, 632, 722
BsmAI	GTCTC	2 cut(s)	188, 744
BsmFI	GGGAC	2 cut(s)	689, 928
BsmI	GAATGC	1 cut(s)	293
BsnI	GGCC	2 cut(s)	161, 165
Bsp1286I	GDGCHC	1 cut(s)	910
Bsp143I	GATC	4 cut(s)	4, 370, 383, 577
BspACI	CCGC	3 cut(s)	90, 147, 904
BspANI	GGCC	2 cut(s)	161, 165
BspCNI	CTCAG	3 cut(s)	73, 659, 756
BspFNI	CGCG	1 cut(s)	90
BspLI	GGNNCC	4 cut(s)	336, 385, 921, 944
BspPI	GGATC	5 cut(s)	12, 365, 378, 391, 572
BsrFI	RCCGGY	1 cut(s)	161
BsrI	ACTGG	3 cut(s)	553, 677, 898
BssAI	RCCGGY	1 cut(s)	161
BssECI	CCNNGG	6 cut(s)	306, 481, 482, 586, 811, 955
BssMI	GATC	4 cut(s)	4, 370, 383, 577
BssT1I	CCWWGG	2 cut(s)	586, 955
Bst2UI	CCWGG	2 cut(s)	483, 813
Bst4CI	ACNGT	2 cut(s)	283, 401
Bst6I	CTCTTC	1 cut(s)	312
BstC8I	GCNNGC	5 cut(s)	88, 163, 533, 873, 906
BstDEI	CTNAG	4 cut(s)	81, 542, 646, 743
BstF5I	GGATG	5 cut(s)	76, 235, 319, 385, 581
BstFNI	CGCG	1 cut(s)	90
BstKTI	GATC	4 cut(s)	7, 373, 386, 580
BstMAI	GTCTC	2 cut(s)	188, 744
BstMBI	GATC	4 cut(s)	4, 370, 383, 577
BstMWI	GCNNNNNNNGC	5 cut(s)	17, 73, 162, 167, 276
BstNI	CCWGG	2 cut(s)	483, 813
BstNSI	RCATGY	2 cut(s)	517, 535
BstSCI	CCNGG	2 cut(s)	481, 811
BstSLI	GKGCMC	1 cut(s)	910
BstUI	CGCG	1 cut(s)	90
BstV1I	GCAGC	2 cut(s)	116, 487
BstX2I	RGATCY	1 cut(s)	383
BstYI	RGATCY	1 cut(s)	383
Bsu36I	CCTNAGG	1 cut(s)	81
BsuRI	GGCC	2 cut(s)	161, 165
BtsCI	GGATG	5 cut(s)	76, 235, 319, 385, 581
BtsI	GCAGTG	1 cut(s)	277
BtsIMutI	CAGTG	2 cut(s)	277, 279
Cac8I	GCNNGC	5 cut(s)	88, 163, 533, 873, 906
Cfr10I	RCCGGY	1 cut(s)	161
Cfr13I	GGNCC	1 cut(s)	942
Csp6I	GTAC	3 cut(s)	355, 546, 808
CviAII	CATG	7 cut(s)	8, 436, 514, 532, 760, 853, 935
CviQI	GTAC	3 cut(s)	355, 546, 808
DdeI	CTNAG	4 cut(s)	81, 542, 646, 743
DpnI	GATC	4 cut(s)	6, 372, 385, 579
DpnII	GATC	4 cut(s)	4, 370, 383, 577
DraIII	CACNNNGTG	1 cut(s)	92
Eam1104I	CTCTTC	1 cut(s)	312
EarI	CTCTTC	1 cut(s)	312
Eco130I	CCWWGG	2 cut(s)	586, 955
Eco47I	GGWCC	1 cut(s)	942
Eco57I	CTGAAG	1 cut(s)	36
Eco81I	CCTNAGG	1 cut(s)	81
EcoO109I	RGGNCCY	1 cut(s)	942
EcoRII	CCWGG	2 cut(s)	481, 811
EcoT14I	CCWWGG	2 cut(s)	586, 955
ErhI	CCWWGG	2 cut(s)	586, 955
FaeI	CATG	7 cut(s)	11, 439, 517, 535, 763, 856, 938
FaqI	GGGAC	2 cut(s)	689, 928
FatI	CATG	7 cut(s)	7, 435, 513, 531, 759, 852, 934
FauI	CCCGC	1 cut(s)	897
Fnu4HI	GCNGC	3 cut(s)	12, 130, 501
FokI	GGATG	5 cut(s)	63, 242, 326, 392, 568
FseI	GGCCGGCC	1 cut(s)	165
Fsp4HI	GCNGC	3 cut(s)	12, 130, 501
FspBI	CTAG	1 cut(s)	863
GluI	GCNGC	3 cut(s)	12, 130, 501
GsaI	CCCAGC	1 cut(s)	192
HaeIII	GGCC	2 cut(s)	161, 165
HapII	CCGG	1 cut(s)	162
Hin1II	CATG	7 cut(s)	11, 439, 517, 535, 763, 856, 938
HinfI	GANTC	2 cut(s)	558, 622
HpaII	CCGG	1 cut(s)	162
HphI	GGTGA	4 cut(s)	91, 104, 221, 451
Hpy166II	GTNNAC	1 cut(s)	775
Hpy188I	TCNGA	3 cut(s)	60, 307, 746
Hpy188III	TCNNGA	3 cut(s)	80, 464, 923
Hpy8I	GTNNAC	1 cut(s)	775
HpyAV	CCTTC	2 cut(s)	345, 650
HpyCH4III	ACNGT	2 cut(s)	283, 401
HpyCH4IV	ACGT	1 cut(s)	844
HpyCH4V	TGCA	7 cut(s)	132, 170, 293, 513, 531, 665, 708
HpyF10VI	GCNNNNNNNGC	5 cut(s)	17, 73, 162, 167, 276
HpyF3I	CTNAG	4 cut(s)	81, 542, 646, 743
HpySE526I	ACGT	1 cut(s)	844
Hsp92II	CATG	7 cut(s)	11, 439, 517, 535, 763, 856, 938
KroI	GCCGGC	1 cut(s)	161
KroNI	GCCGGC	1 cut(s)	163
Kzo9I	GATC	4 cut(s)	4, 370, 383, 577
LmnI	GCTCC	1 cut(s)	149
Lsp1109I	GCAGC	2 cut(s)	116, 487
LweI	GCATC	2 cut(s)	85, 807
MaeI	CTAG	1 cut(s)	863
MaeII	ACGT	1 cut(s)	844
MalI	GATC	4 cut(s)	6, 372, 385, 579
MboI	GATC	4 cut(s)	4, 370, 383, 577
MboII	GAAGA	3 cut(s)	224, 329, 940
MflI	RGATCY	1 cut(s)	383
MhlI	GDGCHC	1 cut(s)	910
MluCI	AATT	5 cut(s)	134, 224, 264, 593, 981
MlyI	GAGTC	1 cut(s)	567
MmeI	TCCRAC	2 cut(s)	414, 482
MnlI	CCTC	8 cut(s)	76, 301, 304, 313, 397, 872, 933, 970
MroNI	GCCGGC	1 cut(s)	161
MseI	TTAA	5 cut(s)	263, 602, 618, 984, 1006
MslI	CAYNNNNRTG	1 cut(s)	536
MspA1I	CMGCKG	1 cut(s)	149
MspI	CCGG	1 cut(s)	162
MspR9I	CCNGG	2 cut(s)	483, 813
Mva1269I	GAATGC	1 cut(s)	293
MvaI	CCWGG	2 cut(s)	483, 813
MvnI	CGCG	1 cut(s)	90
MwoI	GCNNNNNNNGC	5 cut(s)	17, 73, 162, 167, 276
NaeI	GCCGGC	1 cut(s)	163
NdeII	GATC	4 cut(s)	4, 370, 383, 577
NgoMIV	GCCGGC	1 cut(s)	161
NlaIII	CATG	7 cut(s)	11, 439, 517, 535, 763, 856, 938
NlaIV	GGNNCC	4 cut(s)	336, 385, 921, 944
NmeAIII	GCCGAG	1 cut(s)	105
NspI	RCATGY	2 cut(s)	517, 535
PaeI	GCATGC	1 cut(s)	535
PasI	CCCWGGG	1 cut(s)	482
PctI	GAATGC	1 cut(s)	293
PdiI	GCCGGC	1 cut(s)	163
PfeI	GAWTC	1 cut(s)	622
PflFI	GACNNNGTC	1 cut(s)	971
PflMI	CCANNNNNTGG	2 cut(s)	380, 587
PkrI	GCNGC	3 cut(s)	13, 131, 502
PleI	GAGTC	1 cut(s)	566
PpsI	GAGTC	1 cut(s)	566
PpuMI	RGGWCCY	1 cut(s)	942
PshBI	ATTAAT	1 cut(s)	263
PsiI	TTATAA	1 cut(s)	996
Psp5II	RGGWCCY	1 cut(s)	942
Psp6I	CCWGG	2 cut(s)	481, 811
PspFI	CCCAGC	1 cut(s)	188
PspGI	CCWGG	2 cut(s)	481, 811
PspN4I	GGNNCC	4 cut(s)	336, 385, 921, 944
PspPI	GGNCC	1 cut(s)	942
PspPPI	RGGWCCY	1 cut(s)	942
PsuI	RGATCY	1 cut(s)	383
PsyI	GACNNNGTC	1 cut(s)	971
RigI	GGCCGGCC	1 cut(s)	165
RsaI	GTAC	3 cut(s)	356, 547, 809
RsaNI	GTAC	3 cut(s)	355, 546, 808
RseI	CAYNNNNRTG	1 cut(s)	536
SaqAI	TTAA	5 cut(s)	263, 602, 618, 984, 1006
SatI	GCNGC	3 cut(s)	12, 130, 501
Sau3AI	GATC	4 cut(s)	4, 370, 383, 577
Sau96I	GGNCC	1 cut(s)	942
ScaI	AGTACT	1 cut(s)	547
SchI	GAGTC	1 cut(s)	567
ScrFI	CCNGG	2 cut(s)	483, 813
SduI	GDGCHC	1 cut(s)	910
SetI	ASST	9 cut(s)	22, 36, 177, 356, 502, 527, 847, 944, 965
SfaNI	GCATC	2 cut(s)	85, 807
SinI	GGWCC	1 cut(s)	942
SmiMI	CAYNNNNRTG	1 cut(s)	536
SphI	GCATGC	1 cut(s)	535
Sse9I	AATT	5 cut(s)	134, 224, 264, 593, 981
SsiI	CCGC	3 cut(s)	90, 147, 904
SspI	AATATT	3 cut(s)	616, 640, 951
SspMI	CTAG	1 cut(s)	863
StyD4I	CCNGG	2 cut(s)	481, 811
StyI	CCWWGG	2 cut(s)	586, 955
TaaI	ACNGT	2 cut(s)	283, 401
TaiI	ACGT	1 cut(s)	847
TaqI	TCGA	2 cut(s)	396, 975
TasI	AATT	5 cut(s)	134, 224, 264, 593, 981
TatI	WGTACW	1 cut(s)	545
TfiI	GAWTC	1 cut(s)	622
Tru1I	TTAA	5 cut(s)	263, 602, 618, 984, 1006
Tru9I	TTAA	5 cut(s)	263, 602, 618, 984, 1006
TscAI	CASTG	2 cut(s)	277, 286
TseI	GCWGC	3 cut(s)	11, 129, 500
TspDTI	ATGAA	5 cut(s)	241, 258, 330, 669, 717
TspRI	CASTG	2 cut(s)	277, 286
Tth111I	GACNNNGTC	1 cut(s)	971
Van91I	CCANNNNNTGG	2 cut(s)	380, 587
VpaK11BI	GGWCC	1 cut(s)	942
VspI	ATTAAT	1 cut(s)	263
XapI	RAATTY	2 cut(s)	134, 593
XceI	RCATGY	2 cut(s)	517, 535
XspI	CTAG	1 cut(s)	863
ZrmI	AGTACT	1 cut(s)	547

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.