Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0002822

Physical Location & Seq

Genomic Coordinates Forward (+)

10585486 .. 10586246

Gene Structure 761 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g07710.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGCTTGGCATATTGATGAGAAAATCAGTAGCTTCGGCTTCACGGAAATCACTCGCCGCATTGCAAATCGCACAAACAAGTAGGAATTACAGCCTCGGAGTCCTTCCCGATGGCGTCGACCGGAACTCCGAGGCCTTCTCTCGCAACTCCAAGACCATGGACGTCCTGATCTCCGACCTCCAATTCCACATCCAAAAGGTTCTTGGCGGAGGAGGAACTGTAGCTGTGAAGAGAAACAAGAGCAGAAACAAGCTCCTCCCAAGAGAACGCATTGATCGACTGCTCGACCCCGGCGCTTCTTTTCTCGAGCTTTCTCAGCTTGCAGGACATGAATTGTATGAAGAATCCTTACCATCTGCTGGGATCATTACTGGAATAGGTCCGGTCCATGGACGGCTTTGTATGTTTGTAGCTAATCGATCCTACTGTGAAGGGTGGGACTTACTACCCCATCACAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006082 GO:0006520 GO:0006551 GO:0006552 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009056 GO:0009063 GO:0009081 GO:0009083 GO:0009987 GO:0016054 GO:0019752 GO:0031974 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046395 GO:0046872 GO:0046914 GO:0050897 GO:0070013 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606

KEGG Pathways

Metabolic & Signaling

ko00280 ko01100 map00280 map01100

Pfam Domains

Protein Families

Carboxyl_trans

Protein Analysis

154

Amino Acids

16.73

Weight (kDa)

9.51

Isoelectric Point (pI)

44.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002822)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34030
fragaria_vesca	FvH4_2g05870 FvH4_2g05870 FvH4_2g05870 FvH4_2g05870 FvH4_2g05870 FvH4_2g05870
malus_domestica	MD05G1082300.v1.1
prunus_persica	Prupe.8G126800_v2.0.a1
pyrus_communis	pycom05g07710 pycom05g07720
rosa_chinensis	RchiOBHm_Chr6g0257681 RchiOBHm_Chr6g0257701
rosa_laevigata	RLG00000014716 RLG00000014717
rosa_multiflora	Rmu_sc0000916.1_g000002 Rmu_sc0006683.1_g000009 Rmu_sc0006683.1_g000013 Rmu_sc0006683.1_g000018 Rmu_sc0011315.1_g000001 Rmu_sc0011315.1_g000004 Rmu_sc0026590.1_g000002
rosa_roxburghii	Rroxscaffold_7G00208880 Rroxscaffold_7G00208890
rosa_rugosa	Rorug05G0568900 Rorug05G0569000 Rorug05G0569100 Rorug05G0569200 Rorug05G0569300
rosa_samantha	Rh6AG085700 Rh6AG086000 Rh6BG080000 Rh6BG080100 Rh6CG075000 Rh6CG075100 Rh6DG071900 Rh6DG072000
rosa_wichuraiana	Rw6G007690 Rw6G007700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	165
AccB7I	CCANNNNNTGG	1 cut(s)	359
AccI	GTMKAC	1 cut(s)	117
AciI	CCGC	2 cut(s)	57, 207
AclWI	GGATC	2 cut(s)	371, 414
AcyI	GRCGYC	2 cut(s)	114, 162
AfiI	CCNNNNNNNGG	2 cut(s)	359, 389
AluBI	AGCT	6 cut(s)	32, 224, 253, 310, 319, 413
AluI	AGCT	6 cut(s)	32, 224, 253, 310, 319, 413
AlwI	GGATC	2 cut(s)	371, 414
Ama87I	CYCGRG	1 cut(s)	305
AoxI	GGCC	1 cut(s)	132
AspLEI	GCGC	1 cut(s)	296
AspS9I	GGNCC	2 cut(s)	380, 385
AsuC2I	CCSGG	1 cut(s)	291
AvaI	CYCGRG	1 cut(s)	305
AvaII	GGWCC	2 cut(s)	380, 385
BarI	GAAGNNNNNNTAC	2 cut(s)	333, 365
BccI	CCATC	3 cut(s)	104, 361, 459
BceAI	ACGGC	1 cut(s)	410
BcnI	CCSGG	1 cut(s)	291
BfmI	CTRYAG	1 cut(s)	219
BfoI	RGCGCY	1 cut(s)	297
BisI	GCNGC	1 cut(s)	57
BlsI	GCNGC	1 cut(s)	58
Bme1390I	CCNGG	1 cut(s)	291
Bme18I	GGWCC	2 cut(s)	380, 385
BmeT110I	CYCGRG	1 cut(s)	305
BmgT120I	GGNCC	2 cut(s)	380, 385
BmrFI	CCNGG	1 cut(s)	291
BplI	GAGNNNNNCTC	2 cut(s)	122, 154
BpuMI	CCSGG	1 cut(s)	291
Bsa29I	ATCGAT	1 cut(s)	418
BsaHI	GRCGYC	2 cut(s)	114, 162
BsaJI	CCNNGG	5 cut(s)	94, 129, 156, 289, 388
BsaWI	WCCGGW	2 cut(s)	120, 382
BsaXI	ACNNNNNCTCC	4 cut(s)	110, 140, 204, 234
Bsc4I	CCNNNNNNNGG	2 cut(s)	359, 389
Bse1I	ACTGG	1 cut(s)	376
Bse3DI	GCAATG	1 cut(s)	59
BseCI	ATCGAT	1 cut(s)	418
BseDI	CCNNGG	5 cut(s)	94, 129, 156, 289, 388
BseGI	GGATG	1 cut(s)	189
BseLI	CCNNNNNNNGG	2 cut(s)	359, 389
BseMI	GCAATG	1 cut(s)	59
BseMII	CTCAG	1 cut(s)	329
BseNI	ACTGG	1 cut(s)	376
BseRI	GAGGAG	2 cut(s)	225, 245
BseYI	CCCAGC	1 cut(s)	359
Bsh1285I	CGRYCG	1 cut(s)	121
BshFI	GGCC	1 cut(s)	134
BshVI	ATCGAT	1 cut(s)	418
BsiEI	CGRYCG	1 cut(s)	121
BsiHKCI	CYCGRG	1 cut(s)	305
BsiSI	CCGG	3 cut(s)	121, 291, 383
BslFI	GGGAC	1 cut(s)	452
BslI	CCNNNNNNNGG	2 cut(s)	359, 389
BsmFI	GGGAC	1 cut(s)	452
BsnI	GGCC	1 cut(s)	134
BsoBI	CYCGRG	1 cut(s)	305
Bsp143I	GATC	4 cut(s)	168, 274, 363, 419
Bsp19I	CCATGG	2 cut(s)	156, 388
BspACI	CCGC	2 cut(s)	57, 207
BspANI	GGCC	1 cut(s)	134
BspCNI	CTCAG	1 cut(s)	328
BspDI	ATCGAT	1 cut(s)	418
BspPI	GGATC	2 cut(s)	371, 414
BsrDI	GCAATG	1 cut(s)	59
BsrI	ACTGG	1 cut(s)	376
BssECI	CCNNGG	5 cut(s)	94, 129, 156, 289, 388
BssMI	GATC	4 cut(s)	168, 274, 363, 419
BssNI	GRCGYC	2 cut(s)	114, 162
BssT1I	CCWWGG	2 cut(s)	156, 388
Bst4CI	ACNGT	3 cut(s)	220, 428, 458
Bst6I	CTCTTC	1 cut(s)	224
BstACI	GRCGYC	2 cut(s)	114, 162
BstC8I	GCNNGC	1 cut(s)	321
BstDEI	CTNAG	1 cut(s)	315
BstDSI	CCRYGG	2 cut(s)	156, 388
BstF5I	GGATG	1 cut(s)	189
BstH2I	RGCGCY	1 cut(s)	297
BstHHI	GCGC	1 cut(s)	296
BstKTI	GATC	4 cut(s)	171, 277, 366, 422
BstMBI	GATC	4 cut(s)	168, 274, 363, 419
BstMCI	CGRYCG	1 cut(s)	121
BstMWI	GCNNNNNNNGC	1 cut(s)	316
BstSCI	CCNGG	1 cut(s)	289
BstSFI	CTRYAG	1 cut(s)	219
BstXI	CCANNNNNNTGG	1 cut(s)	157
Bsu15I	ATCGAT	1 cut(s)	418
BsuRI	GGCC	1 cut(s)	134
BsuTUI	ATCGAT	1 cut(s)	418
BtgI	CCRYGG	2 cut(s)	156, 388
BtsCI	GGATG	1 cut(s)	189
Cac8I	GCNNGC	1 cut(s)	321
CfoI	GCGC	1 cut(s)	296
Cfr13I	GGNCC	2 cut(s)	380, 385
ClaI	ATCGAT	1 cut(s)	418
CseI	GACGC	1 cut(s)	103
CviAII	CATG	3 cut(s)	157, 329, 389
DdeI	CTNAG	1 cut(s)	315
DpnI	GATC	4 cut(s)	170, 276, 365, 421
DpnII	GATC	4 cut(s)	168, 274, 363, 419
Eam1104I	CTCTTC	1 cut(s)	224
EarI	CTCTTC	1 cut(s)	224
EciI	GGCGGA	1 cut(s)	222
Eco130I	CCWWGG	2 cut(s)	156, 388
Eco147I	AGGCCT	1 cut(s)	134
Eco47I	GGWCC	2 cut(s)	380, 385
Eco88I	CYCGRG	1 cut(s)	305
EcoT14I	CCWWGG	2 cut(s)	156, 388
ErhI	CCWWGG	2 cut(s)	156, 388
FaeI	CATG	3 cut(s)	160, 332, 392
FaiI	YATR	6 cut(s)	11, 158, 330, 339, 390, 404
FaqI	GGGAC	1 cut(s)	452
FatI	CATG	3 cut(s)	156, 328, 388
FblI	GTMKAC	1 cut(s)	117
Fnu4HI	GCNGC	1 cut(s)	57
FokI	GGATG	1 cut(s)	176
Fsp4HI	GCNGC	1 cut(s)	57
GlaI	GCGC	1 cut(s)	295
GluI	GCNGC	1 cut(s)	57
GsaI	CCCAGC	1 cut(s)	363
HaeII	RGCGCY	1 cut(s)	297
HaeIII	GGCC	1 cut(s)	134
HapII	CCGG	3 cut(s)	121, 291, 383
HgaI	GACGC	1 cut(s)	103
HhaI	GCGC	1 cut(s)	296
Hin1I	GRCGYC	2 cut(s)	114, 162
Hin1II	CATG	3 cut(s)	160, 332, 392
Hin6I	GCGC	1 cut(s)	294
HinP1I	GCGC	1 cut(s)	294
HincII	GTYRAC	1 cut(s)	118
HindII	GTYRAC	1 cut(s)	118
HinfI	GANTC	2 cut(s)	99, 344
HpaII	CCGG	3 cut(s)	121, 291, 383
Hpy166II	GTNNAC	1 cut(s)	118
Hpy188I	TCNGA	3 cut(s)	98, 130, 175
Hpy188III	TCNNGA	3 cut(s)	107, 166, 305
Hpy8I	GTNNAC	1 cut(s)	118
Hpy99I	CGWCG	1 cut(s)	119
HpyAV	CCTTC	3 cut(s)	113, 145, 425
HpyCH4III	ACNGT	3 cut(s)	220, 428, 458
HpyCH4IV	ACGT	1 cut(s)	162
HpyCH4V	TGCA	2 cut(s)	64, 323
HpyF10VI	GCNNNNNNNGC	1 cut(s)	316
HpyF3I	CTNAG	1 cut(s)	315
HpySE526I	ACGT	1 cut(s)	162
Hsp92I	GRCGYC	2 cut(s)	114, 162
Hsp92II	CATG	3 cut(s)	160, 332, 392
HspAI	GCGC	1 cut(s)	294
Kzo9I	GATC	4 cut(s)	168, 274, 363, 419
LmnI	GCTCC	1 cut(s)	258
LpnPI	CCDG	7 cut(s)	134, 179, 304, 309, 345, 357, 396
MaeII	ACGT	1 cut(s)	162
MalI	GATC	4 cut(s)	170, 276, 365, 421
MboI	GATC	4 cut(s)	168, 274, 363, 419
MboII	GAAGA	2 cut(s)	241, 353
MluCI	AATT	3 cut(s)	85, 182, 332
MlyI	GAGTC	1 cut(s)	108
MmeI	TCCRAC	1 cut(s)	198
MnlI	CCTC	6 cut(s)	104, 124, 188, 203, 206, 266
MseI	TTAA	1 cut(s)	460
MslI	CAYNNNNRTG	1 cut(s)	14
MspI	CCGG	3 cut(s)	121, 291, 383
MspR9I	CCNGG	1 cut(s)	291
MwoI	GCNNNNNNNGC	1 cut(s)	316
NciI	CCSGG	1 cut(s)	291
NcoI	CCATGG	2 cut(s)	156, 388
NdeII	GATC	4 cut(s)	168, 274, 363, 419
NlaIII	CATG	3 cut(s)	160, 332, 392
PaeR7I	CTCGAG	1 cut(s)	305
PceI	AGGCCT	1 cut(s)	134
PcsI	WCGNNNNNNNCGW	1 cut(s)	274
PfeI	GAWTC	1 cut(s)	344
PflMI	CCANNNNNTGG	1 cut(s)	359
PkrI	GCNGC	1 cut(s)	58
PleI	GAGTC	1 cut(s)	107
PpsI	GAGTC	1 cut(s)	107
PspFI	CCCAGC	1 cut(s)	359
PspPI	GGNCC	2 cut(s)	380, 385
RseI	CAYNNNNRTG	1 cut(s)	14
SalI	GTCGAC	1 cut(s)	116
SaqAI	TTAA	1 cut(s)	460
SatI	GCNGC	1 cut(s)	57
Sau3AI	GATC	4 cut(s)	168, 274, 363, 419
Sau96I	GGNCC	2 cut(s)	380, 385
SchI	GAGTC	1 cut(s)	108
ScrFI	CCNGG	1 cut(s)	291
SfcI	CTRYAG	1 cut(s)	219
Sfr274I	CTCGAG	1 cut(s)	305
SinI	GGWCC	2 cut(s)	380, 385
SlaI	CTCGAG	1 cut(s)	305
SmiMI	CAYNNNNRTG	1 cut(s)	14
SmlI	CTYRAG	1 cut(s)	305
SmoI	CTYRAG	1 cut(s)	305
Sse9I	AATT	3 cut(s)	85, 182, 332
SseBI	AGGCCT	1 cut(s)	134
SsiI	CCGC	2 cut(s)	57, 207
StuI	AGGCCT	1 cut(s)	134
StyD4I	CCNGG	1 cut(s)	289
StyI	CCWWGG	2 cut(s)	156, 388
TaaI	ACNGT	3 cut(s)	220, 428, 458
TaiI	ACGT	1 cut(s)	165
TaqI	TCGA	5 cut(s)	117, 277, 285, 306, 418
TasI	AATT	3 cut(s)	85, 182, 332
TauI	GCSGC	1 cut(s)	59
TfiI	GAWTC	1 cut(s)	344
Tru1I	TTAA	1 cut(s)	460
Tru9I	TTAA	1 cut(s)	460
TspDTI	ATGAA	2 cut(s)	345, 354
TspGWI	ACGGA	1 cut(s)	58
Van91I	CCANNNNNTGG	1 cut(s)	359
VpaK11BI	GGWCC	2 cut(s)	380, 385
XcmI	CCANNNNNNNNNTGG	1 cut(s)	200
XhoI	CTCGAG	1 cut(s)	305
XmiI	GTMKAC	1 cut(s)	117
ZraI	GACGTC	1 cut(s)	163

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.