Rorug05G0569000

carboxylase beta chain

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Reverse (-)
76221356 .. 76223746
2391 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0569000.1

Sequence Viewer

Length: 1479 bp
ATGGCTTTTACCGTATGTTTGTTTTTGCTTTCTTCATTGCTTCTGCTACCAACTTATGTGCTTGCACAAACTAATGGTACCATAGCTGTGGGTGCTTCTCTCTCCACAGCAGGTAACTCCTCATGGCTTTCTCCCTCGTGTGGTTTTGCCTTTGGGTTTCGGCAACTTGAAAACAATGATCTTTTCTTGCTTTCTATATGGTTTGCCAAGATACCAGACAAAACCATAGTTTGGTATGCAAACGGGGATAAGCCTGCACCTGATGGTTCAGTTGTGAATTTGACTGCTAACAGTGGGCTAGTTCTTACAAGTCCTCAGGGTGAGCAGTTATGGAAATCCAATCAAACCATTGCTGGCGTTGTTGCTCATGGGGTTATGAACGATACAGGTAACTTTGTTCTGGAAAATGAGCAGTCAGCAAAGTTATGGGAGACGTTCAAGAATCCTACTGATACCATGTTGCCTGGGCAAATACTGGAAAGAGGAGGGAAGCTTTCTTCTCGAAATTCAGAGACCAACTATACGAGAGGTCACTTCCAGCTAGATTTTCAAGATGATGGAAATCTTGTGCTTAGCGGGCAAAAGCCTTATTATTCAACTGGGACTACCAATGGTGTTCCAGGTAGTGAAGGTCTGCAGTTGGTTTTCAATGACTCAGGTAACTTCTATATTCTGCGAGTGAATGGTGGATATTATAATTTCACAGCAGAGGAACTTGCAGCAAGGGACTACTATCTCCGGACAACTCTCAGCTTTGATGGGGTTTTGGCTCAATATTTCCTCCCAAAGACTTCTGTTGGCAATATAAGCTGGGTTCCTCTTTGGTCAGAGCCATCAAATATTTGCCAAAAAATTAATGTTGATTCAGGTCCTAGTTTTTGTGGGTACAACAGTATCTGCACTTACAAAGCAGACAAGAGGCCCACCTGTGAATGCCCAACGGGATACTCTTTACTTGATCCAAATGATCCATACGGGAGCTGCAATCCAGCTTTCAAACAAGGCTGTGAAAATGAGCCTAGTTATGCAGAAGATTTGTATGATGTTCAGGTGCTAGCAAACACTGATTGGCTCACCTCCAGCTATATGCAGTTAAATGATTCTACTGCTGACACATGCAGTCAATCTTGCTTGCAAGATTATTCATGTGCTGTTGCTATTTACAGCAATCAAACCTGCCAGAAAAAGAAGTTCCCGCTCTCATATGGGAGAGAAGATAACAACTTGAATGCTACAACTTTCATCAAATTGACGACAGTTTATAAGAAGAAGAACGGGAGCACTTCGAATGTCAGTGACGATCGGGCAATGGATGGCATCAAGGAGTTGGAGAAGTACTTGATGATAGCATTTTGGTGCATCCAAGAGGATCCATCAGTAAGACCTACCATAAAGAAAGTGATACAGATGCTTGAAGGCACTGTTGAAGTCTCAGTGCCTCCAATGAATCCCTCCTCATTATATGTTCAATCTAAGTGA

Protein Analysis

492

Amino Acids

54.24

Weight (kDa)

4.83

Isoelectric Point (pI)

35.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 75 - 160 1.3e-15 D-mannose binding lectin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 696, 1263
Acc36I ACCTGC 2 cut(s) 101, 1184
Acc65I GGTACC 1 cut(s) 77
AccB1I GGYRCC 1 cut(s) 77
AccB7I CCANNNNNTGG 1 cut(s) 231
AccBSI CCGCTC 1 cut(s) 1198
AccIII TCCGGA 1 cut(s) 738
AciI CCGC 2 cut(s) 576, 1196
AclWI GGATC 4 cut(s) 953, 962, 1364, 1377
AcsI RAATTY 2 cut(s) 277, 505
AfaI GTAC 3 cut(s) 79, 887, 1337
AfiI CCNNNNNNNGG 2 cut(s) 140, 231
AjnI CCWGG 2 cut(s) 463, 619
AluBI AGCT 8 cut(s) 86, 493, 541, 753, 810, 981, 992, 1083
AluI AGCT 8 cut(s) 86, 493, 541, 753, 810, 981, 992, 1083
Alw21I GWGCWC 1 cut(s) 1283
Alw26I GTCTC 3 cut(s) 425, 506, 1435
AlwI GGATC 4 cut(s) 953, 962, 1364, 1377
AlwNI CAGNNNCTG 1 cut(s) 897
Aor13HI TCCGGA 1 cut(s) 738
AoxI GGCC 1 cut(s) 920
ApeKI GCWGC 2 cut(s) 719, 981
ApoI RAATTY 2 cut(s) 277, 505
AseI ATTAAT 1 cut(s) 855
Asp718I GGTACC 1 cut(s) 77
AspS9I GGNCC 2 cut(s) 869, 921
AsuHPI GGTGA 2 cut(s) 332, 1066
AsuII TTCGAA 1 cut(s) 1286
AsuNHI GCTAGC 1 cut(s) 1054
AvaII GGWCC 1 cut(s) 869
AxyI CCTNAGG 1 cut(s) 315
BaeI ACNNNNGTAYC 4 cut(s) 877, 877, 910, 910
BamHI GGATCC 1 cut(s) 1369
BanI GGYRCC 1 cut(s) 77
BauI CACGAG 1 cut(s) 136
Bbv12I GWGCWC 1 cut(s) 1283
BbvI GCAGC 2 cut(s) 731, 968
BccI CCATC 6 cut(s) 257, 551, 752, 841, 1307, 1381
BciT130I CCWGG 2 cut(s) 465, 621
BciVI GTATCC 1 cut(s) 938
BcoDI GTCTC 3 cut(s) 425, 506, 1435
BfaI CTAG 5 cut(s) 299, 542, 873, 1020, 1055
BfmI CTRYAG 1 cut(s) 635
BfuAI ACCTGC 2 cut(s) 101, 1184
BfuI GTATCC 1 cut(s) 938
BisI GCNGC 2 cut(s) 720, 982
BlpI GCTNAGC 1 cut(s) 572
BlsI GCNGC 2 cut(s) 721, 983
BmcAI AGTACT 1 cut(s) 1337
Bme1390I CCNGG 2 cut(s) 465, 621
Bme18I GGWCC 1 cut(s) 869
BmgT120I GGNCC 2 cut(s) 869, 921
BmiI GGNNCC 3 cut(s) 79, 816, 1371
BmrFI CCNGG 2 cut(s) 465, 621
BmrI ACTGGG 1 cut(s) 609
BmsI GCATC 3 cut(s) 1326, 1368, 1398
BmtI GCTAGC 1 cut(s) 1058
BmuI ACTGGG 1 cut(s) 609
BpmI CTGGAG 1 cut(s) 1063
Bpu1102I GCTNAGC 1 cut(s) 572
Bpu14I TTCGAA 1 cut(s) 1286
BsaBI GATNNNNATC 1 cut(s) 561
BsaI GGTCTC 1 cut(s) 506
BsaJI CCNNGG 1 cut(s) 464
BsaWI WCCGGW 1 cut(s) 738
Bsc4I CCNNNNNNNGG 2 cut(s) 140, 231
Bse1I ACTGG 2 cut(s) 480, 604
Bse21I CCTNAGG 1 cut(s) 315
Bse3DI GCAATG 3 cut(s) 35, 348, 1314
Bse8I GATNNNNATC 1 cut(s) 561
BseAI TCCGGA 1 cut(s) 738
BseBI CCWGG 2 cut(s) 465, 621
BseDI CCNNGG 1 cut(s) 464
BseGI GGATG 2 cut(s) 1318, 1359
BseJI GATNNNNATC 1 cut(s) 561
BseLI CCNNNNNNNGG 2 cut(s) 140, 231
BseMI GCAATG 3 cut(s) 35, 348, 1314
BseMII CTCAG 4 cut(s) 329, 669, 763, 1446
BseNI ACTGG 2 cut(s) 480, 604
BseRI GAGGAG 3 cut(s) 109, 498, 1444
BseXI GCAGC 2 cut(s) 731, 968
BseYI CCCAGC 1 cut(s) 810
BsgI GTGCAG 2 cut(s) 240, 883
Bsh1285I CGRYCG 1 cut(s) 1303
BshFI GGCC 1 cut(s) 922
BshNI GGYRCC 1 cut(s) 77
BsiEI CGRYCG 1 cut(s) 1303
BsiHKAI GWGCWC 1 cut(s) 1283
BsiSI CCGG 1 cut(s) 739
BslFI GGGAC 2 cut(s) 616, 740
BslI CCNNNNNNNGG 2 cut(s) 140, 231
BsmAI GTCTC 3 cut(s) 425, 506, 1435
BsmBI CGTCTC 1 cut(s) 425
BsmFI GGGAC 2 cut(s) 616, 740
BsmI GAATGC 2 cut(s) 938, 1234
BsnI GGCC 1 cut(s) 922
Bso31I GGTCTC 1 cut(s) 506
Bsp119I TTCGAA 1 cut(s) 1286
Bsp1286I GDGCHC 1 cut(s) 1283
Bsp13I TCCGGA 1 cut(s) 738
Bsp143I GATC 5 cut(s) 178, 958, 967, 1300, 1369
Bsp1720I GCTNAGC 1 cut(s) 572
BspACI CCGC 2 cut(s) 576, 1196
BspANI GGCC 1 cut(s) 922
BspCNI CTCAG 4 cut(s) 328, 668, 762, 1445
BspEI TCCGGA 1 cut(s) 738
BspLI GGNNCC 3 cut(s) 79, 816, 1371
BspMAI CTGCAG 1 cut(s) 639
BspMI ACCTGC 2 cut(s) 101, 1184
BspOI GCTAGC 1 cut(s) 1058
BspPI GGATC 4 cut(s) 953, 962, 1364, 1377
BspT104I TTCGAA 1 cut(s) 1286
BspT107I GGYRCC 1 cut(s) 77
BspTNI GGTCTC 1 cut(s) 506
BsrBI CCGCTC 1 cut(s) 1198
BsrDI GCAATG 3 cut(s) 35, 348, 1314
BsrI ACTGG 2 cut(s) 480, 604
BssECI CCNNGG 1 cut(s) 464
BssMI GATC 5 cut(s) 178, 958, 967, 1300, 1369
BssSI CACGAG 1 cut(s) 136
Bst2BI CACGAG 1 cut(s) 136
Bst2UI CCWGG 2 cut(s) 465, 621
Bst4CI ACNGT 5 cut(s) 13, 293, 893, 1258, 1423
BstBI TTCGAA 1 cut(s) 1286
BstC8I GCNNGC 6 cut(s) 63, 255, 355, 578, 1056, 1133
BstDEI CTNAG 6 cut(s) 315, 572, 655, 749, 1432, 1473
BstF5I GGATG 2 cut(s) 1318, 1359
BstKTI GATC 5 cut(s) 181, 961, 970, 1303, 1372
BstMAI GTCTC 3 cut(s) 425, 506, 1435
BstMBI GATC 5 cut(s) 178, 958, 967, 1300, 1369
BstMCI CGRYCG 1 cut(s) 1303
BstMWI GCNNNNNNNGC 3 cut(s) 92, 577, 807
BstNI CCWGG 2 cut(s) 465, 621
BstNSI RCATGY 1 cut(s) 1119
BstSCI CCNGG 2 cut(s) 463, 619
BstSFI CTRYAG 1 cut(s) 635
BstV1I GCAGC 2 cut(s) 731, 968
BstX2I RGATCY 1 cut(s) 1369
BstXI CCANNNNNNTGG 1 cut(s) 88
BstYI RGATCY 1 cut(s) 1369
Bsu36I CCTNAGG 1 cut(s) 315
BsuI GTATCC 1 cut(s) 938
BsuRI GGCC 1 cut(s) 922
BtsCI GGATG 2 cut(s) 1318, 1359
BtsIMutI CAGTG 5 cut(s) 298, 1062, 1300, 1419, 1440
BveI ACCTGC 2 cut(s) 101, 1184
Cac8I GCNNGC 6 cut(s) 63, 255, 355, 578, 1056, 1133
CaiI CAGNNNCTG 1 cut(s) 897
Cfr13I GGNCC 2 cut(s) 869, 921
Csp6I GTAC 3 cut(s) 78, 886, 1336
CviAII CATG 5 cut(s) 123, 368, 457, 1116, 1146
CviQI GTAC 3 cut(s) 78, 886, 1336
DdeI CTNAG 6 cut(s) 315, 572, 655, 749, 1432, 1473
DpnI GATC 5 cut(s) 180, 960, 969, 1302, 1371
DpnII GATC 5 cut(s) 178, 958, 967, 1300, 1369
Eco31I GGTCTC 1 cut(s) 506
Eco47I GGWCC 1 cut(s) 869
Eco81I CCTNAGG 1 cut(s) 315
EcoO109I RGGNCCY 1 cut(s) 869
EcoRII CCWGG 2 cut(s) 463, 619
Esp3I CGTCTC 1 cut(s) 425
FaeI CATG 5 cut(s) 126, 371, 460, 1119, 1149
FaqI GGGAC 2 cut(s) 616, 740
FatI CATG 5 cut(s) 122, 367, 456, 1115, 1145
FauI CCCGC 2 cut(s) 569, 1203
FauNDI CATATG 1 cut(s) 1204
Fnu4HI GCNGC 2 cut(s) 720, 982
FokI GGATG 2 cut(s) 1325, 1346
Fsp4HI GCNGC 2 cut(s) 720, 982
FspBI CTAG 5 cut(s) 299, 542, 873, 1020, 1055
GluI GCNGC 2 cut(s) 720, 982
GsaI CCCAGC 1 cut(s) 814
GsuI CTGGAG 1 cut(s) 1063
HaeIII GGCC 1 cut(s) 922
HapII CCGG 1 cut(s) 739
Hin1II CATG 5 cut(s) 126, 371, 460, 1119, 1149
HindIII AAGCTT 1 cut(s) 491
HinfI GANTC 5 cut(s) 442, 653, 863, 1100, 1447
HpaII CCGG 1 cut(s) 739
HphI GGTGA 2 cut(s) 332, 1066
Hpy188I TCNGA 2 cut(s) 511, 829
Hpy188III TCNNGA 5 cut(s) 401, 439, 501, 551, 739
HpyAV CCTTC 2 cut(s) 623, 1409
HpyCH4III ACNGT 5 cut(s) 13, 293, 893, 1258, 1423
HpyCH4IV ACGT 1 cut(s) 434
HpyF10VI GCNNNNNNNGC 3 cut(s) 92, 577, 807
HpyF3I CTNAG 6 cut(s) 315, 572, 655, 749, 1432, 1473
HpySE526I ACGT 1 cut(s) 434
Hsp92II CATG 5 cut(s) 126, 371, 460, 1119, 1149
Kpn2I TCCGGA 1 cut(s) 738
KpnI GGTACC 1 cut(s) 81
Kzo9I GATC 5 cut(s) 178, 958, 967, 1300, 1369
LmnI GCTCC 2 cut(s) 978, 1278
Lsp1109I GCAGC 2 cut(s) 731, 968
LweI GCATC 3 cut(s) 1326, 1368, 1398
MaeI CTAG 5 cut(s) 299, 542, 873, 1020, 1055
MaeII ACGT 1 cut(s) 434
MaeIII GTNAC 5 cut(s) 113, 389, 530, 659, 1295
MalI GATC 5 cut(s) 180, 960, 969, 1302, 1371
MbiI CCGCTC 1 cut(s) 1198
MboI GATC 5 cut(s) 178, 958, 967, 1300, 1369
MboII GAAGA 6 cut(s) 24, 489, 1043, 1226, 1279, 1282
MflI RGATCY 1 cut(s) 1369
MhlI GDGCHC 1 cut(s) 1283
MluCI AATT 5 cut(s) 277, 505, 697, 852, 1247
MlyI GAGTC 1 cut(s) 647
MmeI TCCRAC 1 cut(s) 1308
MroI TCCGGA 1 cut(s) 738
MseI TTAA 2 cut(s) 855, 1094
MslI CAYNNNNRTG 2 cut(s) 86, 1354
MspI CCGG 1 cut(s) 739
MspR9I CCNGG 2 cut(s) 465, 621
Mva1269I GAATGC 2 cut(s) 938, 1234
MvaI CCWGG 2 cut(s) 465, 621
MwoI GCNNNNNNNGC 3 cut(s) 92, 577, 807
NdeI CATATG 1 cut(s) 1204
NdeII GATC 5 cut(s) 178, 958, 967, 1300, 1369
NheI GCTAGC 1 cut(s) 1054
NlaIII CATG 5 cut(s) 126, 371, 460, 1119, 1149
NlaIV GGNNCC 3 cut(s) 79, 816, 1371
NmuCI GTSAC 2 cut(s) 530, 1295
NspI RCATGY 1 cut(s) 1119
NspV TTCGAA 1 cut(s) 1286
PctI GAATGC 2 cut(s) 938, 1234
PfeI GAWTC 4 cut(s) 442, 863, 1100, 1447
PflMI CCANNNNNTGG 1 cut(s) 231
PkrI GCNGC 2 cut(s) 721, 983
Ple19I CGATCG 1 cut(s) 1303
PleI GAGTC 1 cut(s) 647
PpsI GAGTC 1 cut(s) 647
PpuMI RGGWCCY 1 cut(s) 869
PshBI ATTAAT 1 cut(s) 855
PsiI TTATAA 2 cut(s) 696, 1263
Psp5II RGGWCCY 1 cut(s) 869
Psp6I CCWGG 2 cut(s) 463, 619
PspFI CCCAGC 1 cut(s) 810
PspGI CCWGG 2 cut(s) 463, 619
PspN4I GGNNCC 3 cut(s) 79, 816, 1371
PspPI GGNCC 2 cut(s) 869, 921
PspPPI RGGWCCY 1 cut(s) 869
PstI CTGCAG 1 cut(s) 639
PstNI CAGNNNCTG 1 cut(s) 897
PsuI RGATCY 1 cut(s) 1369
PvuI CGATCG 1 cut(s) 1303
RsaI GTAC 3 cut(s) 79, 887, 1337
RsaNI GTAC 3 cut(s) 78, 886, 1336
RseI CAYNNNNRTG 2 cut(s) 86, 1354
SaqAI TTAA 2 cut(s) 855, 1094
SatI GCNGC 2 cut(s) 720, 982
Sau3AI GATC 5 cut(s) 178, 958, 967, 1300, 1369
Sau96I GGNCC 2 cut(s) 869, 921
ScaI AGTACT 1 cut(s) 1337
SchI GAGTC 1 cut(s) 647
ScrFI CCNGG 2 cut(s) 465, 621
SduI GDGCHC 1 cut(s) 1283
SfaNI GCATC 3 cut(s) 1326, 1368, 1398
SfcI CTRYAG 1 cut(s) 635
SfuI TTCGAA 1 cut(s) 1286
SinI GGWCC 1 cut(s) 869
SmiMI CAYNNNNRTG 2 cut(s) 86, 1354
Sse9I AATT 5 cut(s) 277, 505, 697, 852, 1247
SsiI CCGC 2 cut(s) 576, 1196
SspI AATATT 2 cut(s) 776, 841
SspMI CTAG 5 cut(s) 299, 542, 873, 1020, 1055
StyD4I CCNGG 2 cut(s) 463, 619
TaaI ACNGT 5 cut(s) 13, 293, 893, 1258, 1423
TaiI ACGT 1 cut(s) 437
TaqI TCGA 2 cut(s) 502, 1286
TasI AATT 5 cut(s) 277, 505, 697, 852, 1247
TatI WGTACW 1 cut(s) 1335
TfiI GAWTC 4 cut(s) 442, 863, 1100, 1447
Tru1I TTAA 2 cut(s) 855, 1094
Tru9I TTAA 2 cut(s) 855, 1094
TscAI CASTG 5 cut(s) 298, 1069, 1300, 1426, 1440
TseFI GTSAC 2 cut(s) 530, 1295
TseI GCWGC 2 cut(s) 719, 981
Tsp45I GTSAC 2 cut(s) 530, 1295
TspDTI ATGAA 5 cut(s) 24, 392, 1134, 1231, 1460
TspRI CASTG 5 cut(s) 298, 1069, 1300, 1426, 1440
Van91I CCANNNNNTGG 1 cut(s) 231
VpaK11BI GGWCC 1 cut(s) 869
VspI ATTAAT 1 cut(s) 855
XapI RAATTY 2 cut(s) 277, 505
XceI RCATGY 1 cut(s) 1119
XspI CTAG 5 cut(s) 299, 542, 873, 1020, 1055
ZrmI AGTACT 1 cut(s) 1337
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.