Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0002822

Physical Location & Seq

Genomic Coordinates Reverse (-)

76244664 .. 76253446

Gene Structure 8783 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0569300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGGTTGGTTGTAAGGCTGCAAAAAAGTTTTTGGAGCAGACTATCAAGGTCGACGGTCGCTTGCGAAATCAGATCCTAACATCACATCGCATAGAAATTGGAAATCAGCATAGACGAAATAGCCCGGGAACTTCAACGCTTGCAAATCAAATCATCAAGGTACAATATAGTAGAACATCAACATCATTGTATGAGAATCATGATTTGATAGACATGTATACGACCAAGATAGGAATAGGTGAAAAGAAACATATGGTCATCTCAGAAGAAGTTGGAGCTGTTGTTGGATTTGATCGATATGTCAACTACTTCAAAATTGAAGGCCCTGCTAAGCGATGGGAGTACTTGGAAAGAAGTTTGATGAAGGTGTTCAAAGCTAATGTTCCTTTGAAGCATATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006082 GO:0006520 GO:0006551 GO:0006552 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009056 GO:0009063 GO:0009081 GO:0009083 GO:0009987 GO:0016054 GO:0019752 GO:0031974 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046395 GO:0046872 GO:0046914 GO:0050897 GO:0070013 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606

KEGG Pathways

Metabolic & Signaling

ko00280 ko01100 map00280 map01100

Pfam Domains

Protein Families

Carboxyl_trans

Protein Analysis

133

Amino Acids

15.32

Weight (kDa)

9.78

Isoelectric Point (pI)

37.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002822)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34030
fragaria_vesca	FvH4_2g05870 FvH4_2g05870 FvH4_2g05870 FvH4_2g05870 FvH4_2g05870 FvH4_2g05870
malus_domestica	MD05G1082300.v1.1
prunus_persica	Prupe.8G126800_v2.0.a1
pyrus_communis	pycom05g07710 pycom05g07720
rosa_chinensis	RchiOBHm_Chr6g0257681 RchiOBHm_Chr6g0257701
rosa_laevigata	RLG00000014716 RLG00000014717
rosa_multiflora	Rmu_sc0000916.1_g000002 Rmu_sc0006683.1_g000009 Rmu_sc0006683.1_g000013 Rmu_sc0006683.1_g000018 Rmu_sc0011315.1_g000001 Rmu_sc0011315.1_g000004 Rmu_sc0026590.1_g000002
rosa_roxburghii	Rroxscaffold_7G00208880 Rroxscaffold_7G00208890
rosa_rugosa	Rorug05G0568900 Rorug05G0569000 Rorug05G0569100 Rorug05G0569200 Rorug05G0569300
rosa_samantha	Rh6AG085700 Rh6AG086000 Rh6BG080000 Rh6BG080100 Rh6CG075000 Rh6CG075100 Rh6DG071900 Rh6DG072000
rosa_wichuraiana	Rw6G007690 Rw6G007700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	51, 218
AclWI	GGATC	1 cut(s)	67
AfaI	GTAC	2 cut(s)	162, 344
AflIII	ACRYGT	1 cut(s)	213
AgsI	TTSAA	5 cut(s)	135, 313, 320, 373, 391
AluBI	AGCT	2 cut(s)	278, 377
AluI	AGCT	2 cut(s)	278, 377
AlwI	GGATC	1 cut(s)	67
Ama87I	CYCGRG	1 cut(s)	124
AoxI	GGCC	1 cut(s)	322
ApeKI	GCWGC	1 cut(s)	17
Asp700I	GAANNNNTTC	1 cut(s)	368
AspS9I	GGNCC	1 cut(s)	323
AsuC2I	CCSGG	2 cut(s)	125, 126
AsuHPI	GGTGA	1 cut(s)	251
AvaI	CYCGRG	1 cut(s)	124
BbvI	GCAGC	1 cut(s)	4
BccI	CCATC	1 cut(s)	330
BcnI	CCSGG	2 cut(s)	125, 126
BisI	GCNGC	1 cut(s)	18
BlpI	GCTNAGC	1 cut(s)	330
BlsI	GCNGC	1 cut(s)	19
BmcAI	AGTACT	1 cut(s)	344
Bme1390I	CCNGG	2 cut(s)	125, 126
BmeT110I	CYCGRG	1 cut(s)	124
BmgT120I	GGNCC	1 cut(s)	323
BmrFI	CCNGG	2 cut(s)	125, 126
Bpu1102I	GCTNAGC	1 cut(s)	330
BpuMI	CCSGG	2 cut(s)	125, 126
Bsa29I	ATCGAT	1 cut(s)	295
BsaJI	CCNNGG	1 cut(s)	124
BsaXI	ACNNNNNCTCC	2 cut(s)	267, 297
BseCI	ATCGAT	1 cut(s)	295
BseDI	CCNNGG	1 cut(s)	124
BseMII	CTCAG	1 cut(s)	276
BseXI	GCAGC	1 cut(s)	4
Bsh1285I	CGRYCG	1 cut(s)	58
BshFI	GGCC	1 cut(s)	324
BshVI	ATCGAT	1 cut(s)	295
BsiEI	CGRYCG	1 cut(s)	58
BsiHKCI	CYCGRG	1 cut(s)	124
BsiSI	CCGG	1 cut(s)	125
BsnI	GGCC	1 cut(s)	324
BsoBI	CYCGRG	1 cut(s)	124
Bsp143I	GATC	2 cut(s)	72, 292
Bsp1720I	GCTNAGC	1 cut(s)	330
BspANI	GGCC	1 cut(s)	324
BspCNI	CTCAG	1 cut(s)	275
BspDI	ATCGAT	1 cut(s)	295
BspHI	TCATGA	1 cut(s)	199
BspPI	GGATC	1 cut(s)	67
BssECI	CCNNGG	1 cut(s)	124
BssMI	GATC	2 cut(s)	72, 292
BssNAI	GTATAC	1 cut(s)	219
Bst1107I	GTATAC	1 cut(s)	219
Bst4CI	ACNGT	1 cut(s)	56
BstC8I	GCNNGC	2 cut(s)	62, 141
BstDEI	CTNAG	2 cut(s)	262, 330
BstKTI	GATC	2 cut(s)	75, 295
BstMBI	GATC	2 cut(s)	72, 292
BstMCI	CGRYCG	1 cut(s)	58
BstNSI	RCATGY	1 cut(s)	217
BstSCI	CCNGG	2 cut(s)	123, 124
BstV1I	GCAGC	1 cut(s)	4
BstX2I	RGATCY	1 cut(s)	72
BstYI	RGATCY	1 cut(s)	72
BstZ17I	GTATAC	1 cut(s)	219
Bsu15I	ATCGAT	1 cut(s)	295
BsuRI	GGCC	1 cut(s)	324
BsuTUI	ATCGAT	1 cut(s)	295
BtgZI	GCGATG	2 cut(s)	71, 349
Cac8I	GCNNGC	2 cut(s)	62, 141
CciI	TCATGA	1 cut(s)	199
Cfr13I	GGNCC	1 cut(s)	323
Cfr9I	CCCGGG	1 cut(s)	124
ClaI	ATCGAT	1 cut(s)	295
Csp6I	GTAC	2 cut(s)	161, 343
CviAII	CATG	2 cut(s)	200, 214
CviJI	RGCY	5 cut(s)	17, 123, 278, 324, 377
CviKI_1	RGCY	5 cut(s)	17, 123, 278, 324, 377
CviQI	GTAC	2 cut(s)	161, 343
DdeI	CTNAG	2 cut(s)	262, 330
DpnI	GATC	2 cut(s)	74, 294
DpnII	GATC	2 cut(s)	72, 292
Eco88I	CYCGRG	1 cut(s)	124
EcoO109I	RGGNCCY	1 cut(s)	323
FaeI	CATG	2 cut(s)	203, 217
FatI	CATG	2 cut(s)	199, 213
FauNDI	CATATG	1 cut(s)	252
FblI	GTMKAC	2 cut(s)	51, 218
Fnu4HI	GCNGC	1 cut(s)	18
Fsp4HI	GCNGC	1 cut(s)	18
GluI	GCNGC	1 cut(s)	18
HaeIII	GGCC	1 cut(s)	324
HapII	CCGG	1 cut(s)	125
Hin1II	CATG	2 cut(s)	203, 217
HincII	GTYRAC	2 cut(s)	52, 304
HindII	GTYRAC	2 cut(s)	52, 304
HinfI	GANTC	1 cut(s)	196
HpaII	CCGG	1 cut(s)	125
HphI	GGTGA	1 cut(s)	251
Hpy166II	GTNNAC	3 cut(s)	52, 219, 304
Hpy188I	TCNGA	2 cut(s)	72, 265
Hpy188III	TCNNGA	1 cut(s)	200
Hpy8I	GTNNAC	3 cut(s)	52, 219, 304
Hpy99I	CGWCG	1 cut(s)	56
HpyAV	CCTTC	2 cut(s)	314, 358
HpyCH4III	ACNGT	1 cut(s)	56
HpyCH4V	TGCA	2 cut(s)	20, 143
HpyF3I	CTNAG	2 cut(s)	262, 330
Hsp92II	CATG	2 cut(s)	203, 217
Kzo9I	GATC	2 cut(s)	72, 292
LmnI	GCTCC	2 cut(s)	34, 275
LpnPI	CCDG	2 cut(s)	138, 339
Lsp1109I	GCAGC	1 cut(s)	4
MalI	GATC	2 cut(s)	74, 294
MboI	GATC	2 cut(s)	72, 292
MboII	GAAGA	1 cut(s)	278
MflI	RGATCY	1 cut(s)	72
MluCI	AATT	2 cut(s)	96, 315
MmeI	TCCRAC	2 cut(s)	253, 265
MroXI	GAANNNNTTC	1 cut(s)	368
MseI	TTAA	1 cut(s)	400
MspI	CCGG	1 cut(s)	125
MspR9I	CCNGG	2 cut(s)	125, 126
NciI	CCSGG	2 cut(s)	125, 126
NdeI	CATATG	1 cut(s)	252
NdeII	GATC	2 cut(s)	72, 292
NlaIII	CATG	2 cut(s)	203, 217
NspI	RCATGY	1 cut(s)	217
PagI	TCATGA	1 cut(s)	199
PciI	ACATGT	1 cut(s)	213
PdmI	GAANNNNTTC	1 cut(s)	368
PfeI	GAWTC	1 cut(s)	196
PkrI	GCNGC	1 cut(s)	19
PscI	ACATGT	1 cut(s)	213
PspPI	GGNCC	1 cut(s)	323
PsuI	RGATCY	1 cut(s)	72
RsaI	GTAC	2 cut(s)	162, 344
RsaNI	GTAC	2 cut(s)	161, 343
SalI	GTCGAC	1 cut(s)	50
SaqAI	TTAA	1 cut(s)	400
SatI	GCNGC	1 cut(s)	18
Sau3AI	GATC	2 cut(s)	72, 292
Sau96I	GGNCC	1 cut(s)	323
ScaI	AGTACT	1 cut(s)	344
ScrFI	CCNGG	2 cut(s)	125, 126
SetI	ASST	6 cut(s)	51, 162, 241, 280, 369, 379
SmaI	CCCGGG	1 cut(s)	126
Sse9I	AATT	2 cut(s)	96, 315
StyD4I	CCNGG	2 cut(s)	123, 124
TaaI	ACNGT	1 cut(s)	56
TaqI	TCGA	2 cut(s)	51, 295
TasI	AATT	2 cut(s)	96, 315
TatI	WGTACW	1 cut(s)	342
TfiI	GAWTC	1 cut(s)	196
Tru1I	TTAA	1 cut(s)	400
Tru9I	TTAA	1 cut(s)	400
TseI	GCWGC	1 cut(s)	17
TspDTI	ATGAA	1 cut(s)	377
TspMI	CCCGGG	1 cut(s)	124
XceI	RCATGY	1 cut(s)	217
XmaI	CCCGGG	1 cut(s)	124
XmiI	GTMKAC	2 cut(s)	51, 218
XmnI	GAANNNNTTC	1 cut(s)	368
ZrmI	AGTACT	1 cut(s)	344

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.