Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0002822

Physical Location & Seq

Genomic Coordinates Forward (+)

10586395 .. 10589852

Gene Structure 3458 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g07720.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

ATGTCTGCTGAAGGCATTCCTCAAATTGCGTTGGTATTAGGCTCCTGCACTGCTGGCGGTGCATATATTCCTGCGATGGCGGATGAAAGTGTGATGGTCAAAGGAAATGGTACCATATTTCTAGCAGGACCCCCACTTGTGAAGGCTGCTACTGGAGAAGAAGTATCTGCAGAGGATTTGGGGGGTGCTAGTGTGCATTGCAAGACATCAGGAGTTTCAGACTACTATGCTCAAGATGAACTCCATGGACTTGCTCTTGGGAGAAATATTATTAAGAACTTGCACATGGCTGGGAGAAGCTTGAAAAGCGGGTTGCAAAACATAAACTCTGAATATAAGGAACCATTATATGATGTGAAGGAGCTTCGATTCATCGCGCCCACAGAGCATAAGCAACAGTTCGATATCCGATCAGTTATTGCTCGCATTGTTGATGGAAGTGAATTTGATGAATTCAAGAAATTGTATGGCACTACTCTTGTAACAGGTTTTGGTAGAATCTTTGGGCAGCCTGTGGGAATTATCGGAAACAATGGAATACTATTTAATGAGTCTGCTCTAAAAGGGGCACATTTCATTGAATTATGTACTCAACGAAACATTCCTTTGGTCTTCCTTCAGAATATCACTGGATTTATGGTTGGTTCGAGATCTGAGGCAAATGGTATAGCAAAATCTGGAGCAAAAATGGTGATGGCAGTTTCTTGTGCCAAGGTTCCCAAGGTAACTATCATCATTGGTGGAAGCTTTGGTGCCGGCAATTATGCAATGTGCGGTCGTGCTTATAGTCCTGATTTCATGTACCTTTGGCCGAATGCCAAAATATCCGTGATGGGTGGTGCTCAGGCTGCTGGTGTCCTTGCTCAAATCGAAAGGGGCAACAAGAAGAAGAAAGGAATTGAGTGGGACAAGGAAGAAGAGGAGAAATTCAAGGCAAAGGTAGTGGAGGCATATGAGAGAGAAGGGAACTCTTACTACTCCACAGCAAGGCTCTGGGATGATGGAATTATCGATCCAGCCGACACAAGAAAAGTCATCGGTCTCTCCATCTCCGCTTCGATGAACCGTGACCCCGAAGAAACCAAGTACGGTGTATTCAGAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006082 GO:0006520 GO:0006551 GO:0006552 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009056 GO:0009063 GO:0009081 GO:0009083 GO:0009987 GO:0016054 GO:0019752 GO:0031974 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046395 GO:0046872 GO:0046914 GO:0050897 GO:0070013 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606

KEGG Pathways

Metabolic & Signaling

ko00280 ko01100 map00280 map01100

Pfam Domains

Protein Families

Carboxyl_trans

Protein Analysis

369

Amino Acids

39.73

Weight (kDa)

6.97

Isoelectric Point (pI)

40.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002822)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34030
fragaria_vesca	FvH4_2g05870 FvH4_2g05870 FvH4_2g05870 FvH4_2g05870 FvH4_2g05870 FvH4_2g05870
malus_domestica	MD05G1082300.v1.1
prunus_persica	Prupe.8G126800_v2.0.a1
pyrus_communis	pycom05g07710 pycom05g07720
rosa_chinensis	RchiOBHm_Chr6g0257681 RchiOBHm_Chr6g0257701
rosa_laevigata	RLG00000014716 RLG00000014717
rosa_multiflora	Rmu_sc0000916.1_g000002 Rmu_sc0006683.1_g000009 Rmu_sc0006683.1_g000013 Rmu_sc0006683.1_g000018 Rmu_sc0011315.1_g000001 Rmu_sc0011315.1_g000004 Rmu_sc0026590.1_g000002
rosa_roxburghii	Rroxscaffold_7G00208880 Rroxscaffold_7G00208890
rosa_rugosa	Rorug05G0568900 Rorug05G0569000 Rorug05G0569100 Rorug05G0569200 Rorug05G0569300
rosa_samantha	Rh6AG085700 Rh6AG086000 Rh6BG080000 Rh6BG080100 Rh6CG075000 Rh6CG075100 Rh6DG071900 Rh6DG072000
rosa_wichuraiana	Rw6G007690 Rw6G007700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	110
AccB1I	GGYRCC	2 cut(s)	110, 752
AccII	CGCG	1 cut(s)	377
AciI	CCGC	5 cut(s)	57, 80, 309, 774, 1053
AclWI	GGATC	1 cut(s)	1007
AcoI	YGGCCR	1 cut(s)	809
AcsI	RAATTY	3 cut(s)	443, 452, 926
AcuI	CTGAAG	2 cut(s)	30, 602
AfaI	GTAC	4 cut(s)	112, 589, 803, 1088
AfiI	CCNNNNNNNGG	1 cut(s)	987
AgsI	TTSAA	4 cut(s)	304, 457, 581, 931
AluBI	AGCT	3 cut(s)	300, 364, 747
AluI	AGCT	3 cut(s)	300, 364, 747
Alw21I	GWGCWC	1 cut(s)	844
Alw26I	GTCTC	1 cut(s)	1046
AlwI	GGATC	1 cut(s)	1007
AoxI	GGCC	1 cut(s)	809
ApeKI	GCWGC	3 cut(s)	146, 508, 848
ApoI	RAATTY	3 cut(s)	443, 452, 926
Asp700I	GAANNNNTTC	1 cut(s)	15
Asp718I	GGTACC	1 cut(s)	110
AspLEI	GCGC	1 cut(s)	379
AspS9I	GGNCC	1 cut(s)	128
AsuHPI	GGTGA	1 cut(s)	703
AvaII	GGWCC	1 cut(s)	128
BaeGI	GKGCMC	1 cut(s)	571
BanI	GGYRCC	2 cut(s)	110, 752
BbsI	GAAGAC	1 cut(s)	604
Bbv12I	GWGCWC	1 cut(s)	844
BbvI	GCAGC	3 cut(s)	133, 520, 835
BccI	CCATC	7 cut(s)	70, 88, 428, 688, 826, 995, 1055
BcoDI	GTCTC	1 cut(s)	1046
BfaI	CTAG	2 cut(s)	122, 189
BfmI	CTRYAG	1 cut(s)	168
BglII	AGATCT	1 cut(s)	650
BisI	GCNGC	3 cut(s)	147, 509, 849
BlsI	GCNGC	3 cut(s)	148, 510, 850
Bme18I	GGWCC	1 cut(s)	128
BmgT120I	GGNCC	1 cut(s)	128
BmiI	GGNNCC	6 cut(s)	43, 112, 130, 342, 717, 754
BpiI	GAAGAC	1 cut(s)	604
BpmI	CTGGAG	2 cut(s)	174, 699
Bpu10I	CCTNAGC	1 cut(s)	843
BpuEI	CTTGAG	1 cut(s)	216
Bsa29I	ATCGAT	1 cut(s)	1011
BsaI	GGTCTC	1 cut(s)	1046
BsaJI	CCNNGG	3 cut(s)	244, 711, 720
BsaXI	ACNNNNNCTCC	2 cut(s)	147, 177
Bsc4I	CCNNNNNNNGG	1 cut(s)	987
Bse118I	RCCGGY	1 cut(s)	755
Bse1I	ACTGG	2 cut(s)	157, 634
Bse3DI	GCAATG	2 cut(s)	196, 774
BseCI	ATCGAT	1 cut(s)	1011
BseDI	CCNNGG	3 cut(s)	244, 711, 720
BseGI	GGATG	2 cut(s)	88, 1003
BseLI	CCNNNNNNNGG	1 cut(s)	987
BseMI	GCAATG	2 cut(s)	196, 774
BseMII	CTCAG	2 cut(s)	645, 857
BseNI	ACTGG	2 cut(s)	157, 634
BseRI	GAGGAG	1 cut(s)	935
BseSI	GKGCMC	1 cut(s)	571
BseXI	GCAGC	3 cut(s)	133, 520, 835
BseYI	CCCAGC	1 cut(s)	290
BsgI	GTGCAG	1 cut(s)	31
Bsh1236I	CGCG	1 cut(s)	377
Bsh1285I	CGRYCG	1 cut(s)	778
BshFI	GGCC	1 cut(s)	811
BshNI	GGYRCC	2 cut(s)	110, 752
BshVI	ATCGAT	1 cut(s)	1011
BsiEI	CGRYCG	1 cut(s)	778
BsiHKAI	GWGCWC	1 cut(s)	844
BsiSI	CCGG	1 cut(s)	756
BslFI	GGGAC	1 cut(s)	920
BslI	CCNNNNNNNGG	1 cut(s)	987
BsmAI	GTCTC	1 cut(s)	1046
BsmFI	GGGAC	1 cut(s)	920
BsmI	GAATGC	2 cut(s)	15, 820
BsnI	GGCC	1 cut(s)	811
Bso31I	GGTCTC	1 cut(s)	1046
Bsp1286I	GDGCHC	2 cut(s)	571, 844
Bsp143I	GATC	3 cut(s)	410, 650, 1012
Bsp19I	CCATGG	1 cut(s)	244
BspACI	CCGC	5 cut(s)	57, 80, 309, 774, 1053
BspANI	GGCC	1 cut(s)	811
BspCNI	CTCAG	2 cut(s)	646, 856
BspDI	ATCGAT	1 cut(s)	1011
BspFNI	CGCG	1 cut(s)	377
BspLI	GGNNCC	6 cut(s)	43, 112, 130, 342, 717, 754
BspMAI	CTGCAG	1 cut(s)	172
BspPI	GGATC	1 cut(s)	1007
BspT107I	GGYRCC	2 cut(s)	110, 752
BspTNI	GGTCTC	1 cut(s)	1046
BsrDI	GCAATG	2 cut(s)	196, 774
BsrFI	RCCGGY	1 cut(s)	755
BsrI	ACTGG	2 cut(s)	157, 634
BssAI	RCCGGY	1 cut(s)	755
BssECI	CCNNGG	3 cut(s)	244, 711, 720
BssMI	GATC	3 cut(s)	410, 650, 1012
BssT1I	CCWWGG	3 cut(s)	244, 711, 720
Bst4CI	ACNGT	3 cut(s)	399, 1067, 1091
Bst6I	CTCTTC	1 cut(s)	912
BstC8I	GCNNGC	3 cut(s)	55, 424, 757
BstDEI	CTNAG	2 cut(s)	654, 843
BstDSI	CCRYGG	1 cut(s)	244
BstF5I	GGATG	2 cut(s)	88, 1003
BstFNI	CGCG	1 cut(s)	377
BstHHI	GCGC	1 cut(s)	379
BstKTI	GATC	3 cut(s)	413, 653, 1015
BstMAI	GTCTC	1 cut(s)	1046
BstMBI	GATC	3 cut(s)	410, 650, 1012
BstMCI	CGRYCG	1 cut(s)	778
BstMWI	GCNNNNNNNGC	5 cut(s)	54, 59, 306, 385, 848
BstSFI	CTRYAG	1 cut(s)	168
BstSLI	GKGCMC	1 cut(s)	571
BstUI	CGCG	1 cut(s)	377
BstV1I	GCAGC	3 cut(s)	133, 520, 835
BstV2I	GAAGAC	1 cut(s)	604
BstX2I	RGATCY	1 cut(s)	650
BstYI	RGATCY	1 cut(s)	650
Bsu15I	ATCGAT	1 cut(s)	1011
BsuRI	GGCC	1 cut(s)	811
BsuTUI	ATCGAT	1 cut(s)	1011
BtgI	CCRYGG	1 cut(s)	244
BtgZI	GCGATG	2 cut(s)	89, 358
BtsCI	GGATG	2 cut(s)	88, 1003
BtsI	GCAGTG	1 cut(s)	48
BtsIMutI	CAGTG	2 cut(s)	48, 627
Cac8I	GCNNGC	3 cut(s)	55, 424, 757
CfoI	GCGC	1 cut(s)	379
Cfr10I	RCCGGY	1 cut(s)	755
Cfr13I	GGNCC	1 cut(s)	128
ClaI	ATCGAT	1 cut(s)	1011
Csp6I	GTAC	4 cut(s)	111, 588, 802, 1087
CspCI	CAANNNNNGTGG	2 cut(s)	924, 959
CviAII	CATG	3 cut(s)	245, 286, 799
CviQI	GTAC	4 cut(s)	111, 588, 802, 1087
DdeI	CTNAG	2 cut(s)	654, 843
DpnI	GATC	3 cut(s)	412, 652, 1014
DpnII	GATC	3 cut(s)	410, 650, 1012
EaeI	YGGCCR	1 cut(s)	809
Eam1104I	CTCTTC	1 cut(s)	912
EarI	CTCTTC	1 cut(s)	912
EciI	GGCGGA	1 cut(s)	95
Eco130I	CCWWGG	3 cut(s)	244, 711, 720
Eco31I	GGTCTC	1 cut(s)	1046
Eco32I	GATATC	1 cut(s)	406
Eco47I	GGWCC	1 cut(s)	128
Eco57I	CTGAAG	2 cut(s)	30, 602
EcoO109I	RGGNCCY	1 cut(s)	128
EcoRI	GAATTC	1 cut(s)	452
EcoRV	GATATC	1 cut(s)	406
EcoT14I	CCWWGG	3 cut(s)	244, 711, 720
ErhI	CCWWGG	3 cut(s)	244, 711, 720
FaeI	CATG	3 cut(s)	248, 289, 802
FaqI	GGGAC	1 cut(s)	920
FatI	CATG	3 cut(s)	244, 285, 798
FauI	CCCGC	1 cut(s)	302
FauNDI	CATATG	1 cut(s)	952
Fnu4HI	GCNGC	3 cut(s)	147, 509, 849
FokI	GGATG	2 cut(s)	95, 1010
Fsp4HI	GCNGC	3 cut(s)	147, 509, 849
FspBI	CTAG	2 cut(s)	122, 189
GlaI	GCGC	1 cut(s)	378
GluI	GCNGC	3 cut(s)	147, 509, 849
GsaI	CCCAGC	1 cut(s)	294
GsuI	CTGGAG	2 cut(s)	174, 699
HaeIII	GGCC	1 cut(s)	811
HapII	CCGG	1 cut(s)	756
HhaI	GCGC	1 cut(s)	379
Hin1II	CATG	3 cut(s)	248, 289, 802
Hin6I	GCGC	1 cut(s)	377
HinP1I	GCGC	1 cut(s)	377
HindIII	AAGCTT	2 cut(s)	298, 745
HinfI	GANTC	3 cut(s)	369, 498, 551
HpaII	CCGG	1 cut(s)	756
HphI	GGTGA	1 cut(s)	703
Hpy188I	TCNGA	7 cut(s)	220, 331, 410, 527, 621, 655, 1100
Hpy188III	TCNNGA	6 cut(s)	210, 233, 457, 648, 678, 791
HpyAV	CCTTC	5 cut(s)	5, 136, 352, 626, 956
HpyCH4III	ACNGT	3 cut(s)	399, 1067, 1091
HpyCH4V	TGCA	8 cut(s)	48, 62, 170, 196, 201, 283, 316, 767
HpyF10VI	GCNNNNNNNGC	5 cut(s)	54, 59, 306, 385, 848
HpyF3I	CTNAG	2 cut(s)	654, 843
Hsp92II	CATG	3 cut(s)	248, 289, 802
HspAI	GCGC	1 cut(s)	377
KpnI	GGTACC	1 cut(s)	114
KroI	GCCGGC	1 cut(s)	755
KroNI	GCCGGC	1 cut(s)	757
Kzo9I	GATC	3 cut(s)	410, 650, 1012
LmnI	GCTCC	3 cut(s)	47, 361, 680
Lsp1109I	GCAGC	3 cut(s)	133, 520, 835
MaeI	CTAG	2 cut(s)	122, 189
MaeIII	GTNAC	3 cut(s)	481, 724, 1067
MalI	GATC	3 cut(s)	412, 652, 1014
MboI	GATC	3 cut(s)	410, 650, 1012
MboII	GAAGA	7 cut(s)	170, 604, 898, 901, 926, 929, 1088
MflI	RGATCY	1 cut(s)	650
MhlI	GDGCHC	2 cut(s)	571, 844
MlyI	GAGTC	1 cut(s)	560
MnlI	CCTC	5 cut(s)	30, 166, 649, 913, 940
MroNI	GCCGGC	1 cut(s)	755
MroXI	GAANNNNTTC	1 cut(s)	15
MseI	TTAA	2 cut(s)	273, 546
MspI	CCGG	1 cut(s)	756
Mva1269I	GAATGC	2 cut(s)	15, 820
MvnI	CGCG	1 cut(s)	377
MwoI	GCNNNNNNNGC	5 cut(s)	54, 59, 306, 385, 848
NaeI	GCCGGC	1 cut(s)	757
NcoI	CCATGG	1 cut(s)	244
NdeI	CATATG	1 cut(s)	952
NdeII	GATC	3 cut(s)	410, 650, 1012
NgoMIV	GCCGGC	1 cut(s)	755
NlaIII	CATG	3 cut(s)	248, 289, 802
NlaIV	GGNNCC	6 cut(s)	43, 112, 130, 342, 717, 754
NmuCI	GTSAC	1 cut(s)	1067
PcsI	WCGNNNNNNNCGW	1 cut(s)	1017
PctI	GAATGC	2 cut(s)	15, 820
PdiI	GCCGGC	1 cut(s)	757
PdmI	GAANNNNTTC	1 cut(s)	15
PfeI	GAWTC	2 cut(s)	369, 498
PkrI	GCNGC	3 cut(s)	148, 510, 850
PleI	GAGTC	1 cut(s)	559
PpsI	GAGTC	1 cut(s)	559
PpuMI	RGGWCCY	1 cut(s)	128
Psp5II	RGGWCCY	1 cut(s)	128
PspFI	CCCAGC	1 cut(s)	290
PspN4I	GGNNCC	6 cut(s)	43, 112, 130, 342, 717, 754
PspPI	GGNCC	1 cut(s)	128
PspPPI	RGGWCCY	1 cut(s)	128
PsrI	GAACNNNNNNTAC	2 cut(s)	959, 991
PstI	CTGCAG	1 cut(s)	172
PsuI	RGATCY	1 cut(s)	650
RsaI	GTAC	4 cut(s)	112, 589, 803, 1088
RsaNI	GTAC	4 cut(s)	111, 588, 802, 1087
SaqAI	TTAA	2 cut(s)	273, 546
SatI	GCNGC	3 cut(s)	147, 509, 849
Sau3AI	GATC	3 cut(s)	410, 650, 1012
Sau96I	GGNCC	1 cut(s)	128
SchI	GAGTC	1 cut(s)	560
SduI	GDGCHC	2 cut(s)	571, 844
SetI	ASST	8 cut(s)	302, 366, 490, 717, 726, 749, 807, 942
SfcI	CTRYAG	1 cut(s)	168
SinI	GGWCC	1 cut(s)	128
SmlI	CTYRAG	1 cut(s)	231
SmoI	CTYRAG	1 cut(s)	231
SsiI	CCGC	5 cut(s)	57, 80, 309, 774, 1053
SspI	AATATT	1 cut(s)	268
SspMI	CTAG	2 cut(s)	122, 189
StyI	CCWWGG	3 cut(s)	244, 711, 720
TaaI	ACNGT	3 cut(s)	399, 1067, 1091
TaqI	TCGA	6 cut(s)	367, 402, 647, 870, 1011, 1058
TaqII	GACCGA	1 cut(s)	1028
TatI	WGTACW	1 cut(s)	587
TfiI	GAWTC	2 cut(s)	369, 498
Tru1I	TTAA	2 cut(s)	273, 546
Tru9I	TTAA	2 cut(s)	273, 546
TscAI	CASTG	2 cut(s)	55, 634
TseFI	GTSAC	1 cut(s)	1067
TseI	GCWGC	3 cut(s)	146, 508, 848
Tsp45I	GTSAC	1 cut(s)	1067
TspDTI	ATGAA	7 cut(s)	99, 252, 361, 465, 565, 787, 1076
TspGWI	ACGGA	1 cut(s)	817
TspRI	CASTG	2 cut(s)	55, 634
VpaK11BI	GGWCC	1 cut(s)	128
XapI	RAATTY	3 cut(s)	443, 452, 926
XmnI	GAANNNNTTC	1 cut(s)	15
XspI	CTAG	2 cut(s)	122, 189

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.