Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0002822

Physical Location & Seq

Genomic Coordinates Forward (+)

59042300 .. 59043549

Gene Structure 1250 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00208890.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGCTTAGCATTTTGGTGAAGAGAGGAGCTTTAGGTTCATGGAGGTCAATGAGCGCAGTACAAATAAGGAGGGATTACAGCCTCGGAGTGCTTCCCGATGGAGTTGATCGGAATTCCGAGGCTTTTTCTCGGAATTCTAAGGACATGGATTTCTTAATATCCGACCTCCAATCCCACATCCAAAAGGTTCTTGCTGGAGGAGGAGCTGCAGCTGTGAAGAGAAACAAGAGCAGGAATAAGCTCCTTCCTCGAGAACGCATTGATCGCTTGCTTGATCCTGGTGCTTCTTTCCTTGAGCTTTCTCAGCTTACAGGCCATGAACTATATGAAGGCACATTACCATATGCTGGGATCATTACAGGAATTGGTCCTGTCCATGGGAGGCTTTGTATGTTTGTGGCTAATGATCCTACTGTTAAGGGTGGGACTTATTATCCCATCACTGTTAAGAAACACCTCAGGGCGCAAGAAATTGCCGCTCGATGCAAGTTACCATGTGTATATCTTGTTGATAGCGGAGGGGCTTTTCTTCCCAAACAGGCAGAGGTCTTTCCTGACAAGGAGAATTTTGGTAGAACCTTGTACAATCAATCTGTAATGTCAGCTGAAGGTATTCCTCAAATTGCGCTGGTATTAGGCTCTTGCACTGGCGGCGGTGCCTATATTCCTGCAATGGCTGATGAAAGTGTGATGGTCAAAGGAAATGGTACCGTGTTTCTAGCAGGACCCCCACTTTTGAAGGCTGCCACTGGAGAAGAAGTATCGGCAGAGGATTTGGGGGGTGCTAGCGTGCATTGCAAGACTTCAGGAGTGTCGGAGTATTATGCTCAAGGTATTTCACTTGTCCAATTCCGTACTTTGAACCTTTTTGCTTGCTATGGGCTCTCTTTACTTGTCAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006082 GO:0006520 GO:0006551 GO:0006552 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009056 GO:0009063 GO:0009081 GO:0009083 GO:0009987 GO:0016054 GO:0019752 GO:0031974 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046395 GO:0046872 GO:0046914 GO:0050897 GO:0070013 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606

KEGG Pathways

Metabolic & Signaling

ko00280 ko01100 map00280 map01100

Pfam Domains

Protein Families

Carboxyl_trans

Protein Analysis

300

Amino Acids

32.1

Weight (kDa)

8.66

Isoelectric Point (pI)

39.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Carboxyl_trans	PF01039	75 - 277	3.3e-65	Carboxyl transferase domain
ACCA	PF03255	142 - 233	5.4e-08	Acetyl co-enzyme A carboxylase carboxyltransferase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002822)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34030
fragaria_vesca	FvH4_2g05870 FvH4_2g05870 FvH4_2g05870 FvH4_2g05870 FvH4_2g05870 FvH4_2g05870
malus_domestica	MD05G1082300.v1.1
prunus_persica	Prupe.8G126800_v2.0.a1
pyrus_communis	pycom05g07710 pycom05g07720
rosa_chinensis	RchiOBHm_Chr6g0257681 RchiOBHm_Chr6g0257701
rosa_laevigata	RLG00000014716 RLG00000014717
rosa_multiflora	Rmu_sc0000916.1_g000002 Rmu_sc0006683.1_g000009 Rmu_sc0006683.1_g000013 Rmu_sc0006683.1_g000018 Rmu_sc0011315.1_g000001 Rmu_sc0011315.1_g000004 Rmu_sc0026590.1_g000002
rosa_roxburghii	Rroxscaffold_7G00208880 Rroxscaffold_7G00208890
rosa_rugosa	Rorug05G0568900 Rorug05G0569000 Rorug05G0569100 Rorug05G0569200 Rorug05G0569300
rosa_samantha	Rh6AG085700 Rh6AG086000 Rh6BG080000 Rh6BG080100 Rh6CG075000 Rh6CG075100 Rh6DG071900 Rh6DG072000
rosa_wichuraiana	Rw6G007690 Rw6G007700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	707
AccB1I	GGYRCC	2 cut(s)	656, 707
AccB7I	CCANNNNNTGG	1 cut(s)	347
AccBSI	CCGCTC	1 cut(s)	479
AciI	CCGC	4 cut(s)	477, 516, 651, 654
AclWI	GGATC	3 cut(s)	269, 359, 401
AcsI	RAATTY	3 cut(s)	112, 133, 565
AcuI	CTGAAG	2 cut(s)	627, 789
AfaI	GTAC	4 cut(s)	60, 584, 709, 856
AfiI	CCNNNNNNNGG	2 cut(s)	347, 377
AgsI	TTSAA	2 cut(s)	739, 862
AjnI	CCWGG	1 cut(s)	277
AluBI	AGCT	7 cut(s)	29, 206, 212, 241, 298, 307, 605
AluI	AGCT	7 cut(s)	29, 206, 212, 241, 298, 307, 605
AlwI	GGATC	3 cut(s)	269, 359, 401
Ama87I	CYCGRG	1 cut(s)	249
AoxI	GGCC	1 cut(s)	313
ApeKI	GCWGC	3 cut(s)	206, 209, 743
ApoI	RAATTY	3 cut(s)	112, 133, 565
Asp700I	GAANNNNTTC	1 cut(s)	612
Asp718I	GGTACC	1 cut(s)	707
AspLEI	GCGC	3 cut(s)	56, 466, 628
AspS9I	GGNCC	2 cut(s)	368, 725
AsuHPI	GGTGA	1 cut(s)	28
AsuNHI	GCTAGC	1 cut(s)	785
AvaI	CYCGRG	1 cut(s)	249
AvaII	GGWCC	2 cut(s)	368, 725
AxyI	CCTNAGG	1 cut(s)	458
BanI	GGYRCC	2 cut(s)	656, 707
BanII	GRGCYC	1 cut(s)	885
BarI	GAAGNNNNNNTAC	2 cut(s)	321, 353
BbvI	GCAGC	3 cut(s)	193, 221, 730
BccI	CCATC	3 cut(s)	92, 446, 685
BciT130I	CCWGG	1 cut(s)	279
BfaI	CTAG	2 cut(s)	719, 786
BfmI	CTRYAG	1 cut(s)	207
BisI	GCNGC	5 cut(s)	207, 210, 477, 652, 744
BlpI	GCTNAGC	1 cut(s)	5
BlsI	GCNGC	5 cut(s)	208, 211, 478, 653, 745
Bme1390I	CCNGG	1 cut(s)	279
Bme18I	GGWCC	2 cut(s)	368, 725
BmeT110I	CYCGRG	1 cut(s)	249
BmgT120I	GGNCC	2 cut(s)	368, 725
BmiI	GGNNCC	3 cut(s)	658, 709, 727
BmrFI	CCNGG	1 cut(s)	279
BmsI	GCATC	1 cut(s)	473
BmtI	GCTAGC	1 cut(s)	789
BpmI	CTGGAG	2 cut(s)	216, 771
Bpu1102I	GCTNAGC	1 cut(s)	5
BpuEI	CTTGAG	2 cut(s)	314, 813
BsaJI	CCNNGG	3 cut(s)	82, 117, 376
BsaXI	ACNNNNNCTCC	4 cut(s)	373, 403, 744, 774
Bsc4I	CCNNNNNNNGG	2 cut(s)	347, 377
Bse1I	ACTGG	2 cut(s)	652, 754
Bse21I	CCTNAGG	1 cut(s)	458
Bse3DI	GCAATG	2 cut(s)	678, 793
BseBI	CCWGG	1 cut(s)	279
BseDI	CCNNGG	3 cut(s)	82, 117, 376
BseGI	GGATG	1 cut(s)	177
BseLI	CCNNNNNNNGG	2 cut(s)	347, 377
BseMI	GCAATG	2 cut(s)	678, 793
BseMII	CTCAG	2 cut(s)	317, 472
BseNI	ACTGG	2 cut(s)	652, 754
BseRI	GAGGAG	3 cut(s)	39, 213, 216
BseXI	GCAGC	3 cut(s)	193, 221, 730
BseYI	CCCAGC	1 cut(s)	347
BshFI	GGCC	1 cut(s)	315
BshNI	GGYRCC	2 cut(s)	656, 707
BsiHKCI	CYCGRG	1 cut(s)	249
BslFI	GGGAC	1 cut(s)	439
BslI	CCNNNNNNNGG	2 cut(s)	347, 377
BsmFI	GGGAC	1 cut(s)	439
BsnI	GGCC	1 cut(s)	315
BsoBI	CYCGRG	1 cut(s)	249
Bsp1286I	GDGCHC	1 cut(s)	885
Bsp1407I	TGTACA	1 cut(s)	582
Bsp143I	GATC	5 cut(s)	106, 262, 274, 351, 406
Bsp1720I	GCTNAGC	1 cut(s)	5
Bsp19I	CCATGG	1 cut(s)	376
BspACI	CCGC	4 cut(s)	477, 516, 651, 654
BspANI	GGCC	1 cut(s)	315
BspCNI	CTCAG	2 cut(s)	316, 471
BspLI	GGNNCC	3 cut(s)	658, 709, 727
BspMAI	CTGCAG	1 cut(s)	211
BspOI	GCTAGC	1 cut(s)	789
BspPI	GGATC	3 cut(s)	269, 359, 401
BspT107I	GGYRCC	2 cut(s)	656, 707
BsrBI	CCGCTC	1 cut(s)	479
BsrDI	GCAATG	2 cut(s)	678, 793
BsrGI	TGTACA	1 cut(s)	582
BsrI	ACTGG	2 cut(s)	652, 754
BssECI	CCNNGG	3 cut(s)	82, 117, 376
BssMI	GATC	5 cut(s)	106, 262, 274, 351, 406
BssT1I	CCWWGG	1 cut(s)	376
Bst2UI	CCWGG	1 cut(s)	279
Bst4CI	ACNGT	3 cut(s)	415, 445, 712
Bst6I	CTCTTC	2 cut(s)	14, 212
BstAUI	TGTACA	1 cut(s)	582
BstC8I	GCNNGC	4 cut(s)	269, 787, 791, 874
BstDEI	CTNAG	4 cut(s)	5, 138, 303, 458
BstDSI	CCRYGG	1 cut(s)	376
BstF5I	GGATG	1 cut(s)	177
BstHHI	GCGC	3 cut(s)	56, 466, 628
BstKTI	GATC	5 cut(s)	109, 265, 277, 354, 409
BstMBI	GATC	5 cut(s)	106, 262, 274, 351, 406
BstMWI	GCNNNNNNNGC	4 cut(s)	264, 304, 651, 795
BstNI	CCWGG	1 cut(s)	279
BstSCI	CCNGG	1 cut(s)	277
BstSFI	CTRYAG	1 cut(s)	207
BstV1I	GCAGC	3 cut(s)	193, 221, 730
Bsu36I	CCTNAGG	1 cut(s)	458
BsuRI	GGCC	1 cut(s)	315
BtgI	CCRYGG	1 cut(s)	376
BtsCI	GGATG	1 cut(s)	177
BtsIMutI	CAGTG	3 cut(s)	441, 645, 747
Cac8I	GCNNGC	4 cut(s)	269, 787, 791, 874
CfoI	GCGC	3 cut(s)	56, 466, 628
Cfr13I	GGNCC	2 cut(s)	368, 725
Csp6I	GTAC	4 cut(s)	59, 583, 708, 855
CviAII	CATG	5 cut(s)	39, 145, 317, 377, 495
CviQI	GTAC	4 cut(s)	59, 583, 708, 855
DdeI	CTNAG	4 cut(s)	5, 138, 303, 458
DpnI	GATC	5 cut(s)	108, 264, 276, 353, 408
DpnII	GATC	5 cut(s)	106, 262, 274, 351, 406
Eam1104I	CTCTTC	2 cut(s)	14, 212
EarI	CTCTTC	2 cut(s)	14, 212
Eco130I	CCWWGG	1 cut(s)	376
Eco24I	GRGCYC	1 cut(s)	885
Eco47I	GGWCC	2 cut(s)	368, 725
Eco57I	CTGAAG	2 cut(s)	627, 789
Eco81I	CCTNAGG	1 cut(s)	458
Eco88I	CYCGRG	1 cut(s)	249
EcoO109I	RGGNCCY	1 cut(s)	725
EcoRI	GAATTC	2 cut(s)	112, 133
EcoRII	CCWGG	1 cut(s)	277
EcoT14I	CCWWGG	1 cut(s)	376
EcoT38I	GRGCYC	1 cut(s)	885
ErhI	CCWWGG	1 cut(s)	376
FaeI	CATG	5 cut(s)	42, 148, 320, 380, 498
FaqI	GGGAC	1 cut(s)	439
FatI	CATG	5 cut(s)	38, 144, 316, 376, 494
FauNDI	CATATG	1 cut(s)	343
Fnu4HI	GCNGC	5 cut(s)	207, 210, 477, 652, 744
FokI	GGATG	1 cut(s)	164
FriOI	GRGCYC	1 cut(s)	885
Fsp4HI	GCNGC	5 cut(s)	207, 210, 477, 652, 744
FspBI	CTAG	2 cut(s)	719, 786
GlaI	GCGC	3 cut(s)	55, 465, 627
GluI	GCNGC	5 cut(s)	207, 210, 477, 652, 744
GsaI	CCCAGC	1 cut(s)	351
GsuI	CTGGAG	2 cut(s)	216, 771
HaeIII	GGCC	1 cut(s)	315
HhaI	GCGC	3 cut(s)	56, 466, 628
Hin1II	CATG	5 cut(s)	42, 148, 320, 380, 498
Hin6I	GCGC	3 cut(s)	54, 464, 626
HinP1I	GCGC	3 cut(s)	54, 464, 626
HphI	GGTGA	1 cut(s)	28
Hpy188I	TCNGA	6 cut(s)	86, 111, 118, 132, 163, 817
Hpy188III	TCNNGA	4 cut(s)	95, 251, 554, 807
HpyAV	CCTTC	4 cut(s)	254, 323, 602, 733
HpyCH4III	ACNGT	3 cut(s)	415, 445, 712
HpyCH4V	TGCA	6 cut(s)	209, 486, 645, 671, 793, 798
HpyF10VI	GCNNNNNNNGC	4 cut(s)	264, 304, 651, 795
HpyF3I	CTNAG	4 cut(s)	5, 138, 303, 458
Hsp92II	CATG	5 cut(s)	42, 148, 320, 380, 498
HspAI	GCGC	3 cut(s)	54, 464, 626
KpnI	GGTACC	1 cut(s)	711
Kzo9I	GATC	5 cut(s)	106, 262, 274, 351, 406
LmnI	GCTCC	3 cut(s)	26, 203, 246
Lsp1109I	GCAGC	3 cut(s)	193, 221, 730
LweI	GCATC	1 cut(s)	473
MaeI	CTAG	2 cut(s)	719, 786
MaeIII	GTNAC	1 cut(s)	489
MalI	GATC	5 cut(s)	108, 264, 276, 353, 408
MbiI	CCGCTC	1 cut(s)	479
MboI	GATC	5 cut(s)	106, 262, 274, 351, 406
MboII	GAAGA	4 cut(s)	31, 229, 521, 767
MhlI	GDGCHC	1 cut(s)	885
MluCI	AATT	7 cut(s)	112, 133, 363, 471, 565, 621, 848
MmeI	TCCRAC	2 cut(s)	186, 795
MroXI	GAANNNNTTC	1 cut(s)	612
MseI	TTAA	4 cut(s)	155, 417, 447, 901
MslI	CAYNNNNRTG	1 cut(s)	14
MspA1I	CMGCKG	2 cut(s)	212, 605
MspR9I	CCNGG	1 cut(s)	279
MvaI	CCWGG	1 cut(s)	279
MwoI	GCNNNNNNNGC	4 cut(s)	264, 304, 651, 795
NcoI	CCATGG	1 cut(s)	376
NdeI	CATATG	1 cut(s)	343
NdeII	GATC	5 cut(s)	106, 262, 274, 351, 406
NheI	GCTAGC	1 cut(s)	785
NlaIII	CATG	5 cut(s)	42, 148, 320, 380, 498
NlaIV	GGNNCC	3 cut(s)	658, 709, 727
PaeR7I	CTCGAG	1 cut(s)	249
PdmI	GAANNNNTTC	1 cut(s)	612
PflMI	CCANNNNNTGG	1 cut(s)	347
PkrI	GCNGC	5 cut(s)	208, 211, 478, 653, 745
PpuMI	RGGWCCY	1 cut(s)	725
Psp5II	RGGWCCY	1 cut(s)	725
Psp6I	CCWGG	1 cut(s)	277
PspFI	CCCAGC	1 cut(s)	347
PspGI	CCWGG	1 cut(s)	277
PspN4I	GGNNCC	3 cut(s)	658, 709, 727
PspPI	GGNCC	2 cut(s)	368, 725
PspPPI	RGGWCCY	1 cut(s)	725
PstI	CTGCAG	1 cut(s)	211
PvuII	CAGCTG	2 cut(s)	212, 605
RsaI	GTAC	4 cut(s)	60, 584, 709, 856
RsaNI	GTAC	4 cut(s)	59, 583, 708, 855
RseI	CAYNNNNRTG	1 cut(s)	14
SaqAI	TTAA	4 cut(s)	155, 417, 447, 901
SatI	GCNGC	5 cut(s)	207, 210, 477, 652, 744
Sau3AI	GATC	5 cut(s)	106, 262, 274, 351, 406
Sau96I	GGNCC	2 cut(s)	368, 725
ScrFI	CCNGG	1 cut(s)	279
SduI	GDGCHC	1 cut(s)	885
SfaNI	GCATC	1 cut(s)	473
SfcI	CTRYAG	1 cut(s)	207
Sfr274I	CTCGAG	1 cut(s)	249
SinI	GGWCC	2 cut(s)	368, 725
SlaI	CTCGAG	1 cut(s)	249
SmiMI	CAYNNNNRTG	1 cut(s)	14
SmlI	CTYRAG	3 cut(s)	249, 293, 828
SmoI	CTYRAG	3 cut(s)	249, 293, 828
Sse9I	AATT	7 cut(s)	112, 133, 363, 471, 565, 621, 848
SsiI	CCGC	4 cut(s)	477, 516, 651, 654
SspMI	CTAG	2 cut(s)	719, 786
StyD4I	CCNGG	1 cut(s)	277
StyI	CCWWGG	1 cut(s)	376
TaaI	ACNGT	3 cut(s)	415, 445, 712
TaqI	TCGA	2 cut(s)	250, 481
TasI	AATT	7 cut(s)	112, 133, 363, 471, 565, 621, 848
TatI	WGTACW	2 cut(s)	58, 582
TauI	GCSGC	2 cut(s)	479, 654
Tru1I	TTAA	4 cut(s)	155, 417, 447, 901
Tru9I	TTAA	4 cut(s)	155, 417, 447, 901
TscAI	CASTG	3 cut(s)	448, 652, 754
TseI	GCWGC	3 cut(s)	206, 209, 743
TspDTI	ATGAA	4 cut(s)	27, 333, 342, 696
TspGWI	ACGGA	1 cut(s)	842
TspRI	CASTG	3 cut(s)	448, 652, 754
Van91I	CCANNNNNTGG	1 cut(s)	347
VpaK11BI	GGWCC	2 cut(s)	368, 725
XapI	RAATTY	3 cut(s)	112, 133, 565
XhoI	CTCGAG	1 cut(s)	249
XmnI	GAANNNNTTC	1 cut(s)	612
XspI	CTAG	2 cut(s)	719, 786

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.