Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0002822

Physical Location & Seq

Genomic Coordinates Forward (+)

76230253 .. 76231038

Gene Structure 786 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0569100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGGCAAGCACGAGCGATGCCCATTTCCTCCTAGTTGCTTCGCCGCGAAAAGGGCAGCTGGAAATTGCGGTGAACTCTAGAGTCGGATCTGAAACTCTCTTTTGGGTCTCTGAGAAGGTTAAATCTCAAGTGGCTCCCAACCGAGTAGATCAAATCTATCGCTGTTGGGAATCATCGGTTGTTTATGGTGGGTTGCTGAAAATTGTATTTAGATTCTCAGACCCAAATAAGGGGCTCCGAGCAGCAATCAAAATCAAGGGGGAAGTGAGCTGCTTCAGCTGTTGTGATGAAGATGATATGCATAAAGCAACTGACAATGGAGGTGCTTACATGATGAACCTGCAAGTAATGCTCACCATCCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006082 GO:0006520 GO:0006551 GO:0006552 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009056 GO:0009063 GO:0009081 GO:0009083 GO:0009987 GO:0016054 GO:0019752 GO:0031974 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046395 GO:0046872 GO:0046914 GO:0050897 GO:0070013 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606

KEGG Pathways

Metabolic & Signaling

ko00280 ko01100 map00280 map01100

Pfam Domains

Protein Families

Carboxyl_trans

Protein Analysis

121

Amino Acids

13.42

Weight (kDa)

7.66

Isoelectric Point (pI)

39.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002822)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34030
fragaria_vesca	FvH4_2g05870 FvH4_2g05870 FvH4_2g05870 FvH4_2g05870 FvH4_2g05870 FvH4_2g05870
malus_domestica	MD05G1082300.v1.1
prunus_persica	Prupe.8G126800_v2.0.a1
pyrus_communis	pycom05g07710 pycom05g07720
rosa_chinensis	RchiOBHm_Chr6g0257681 RchiOBHm_Chr6g0257701
rosa_laevigata	RLG00000014716 RLG00000014717
rosa_multiflora	Rmu_sc0000916.1_g000002 Rmu_sc0006683.1_g000009 Rmu_sc0006683.1_g000013 Rmu_sc0006683.1_g000018 Rmu_sc0011315.1_g000001 Rmu_sc0011315.1_g000004 Rmu_sc0026590.1_g000002
rosa_roxburghii	Rroxscaffold_7G00208880 Rroxscaffold_7G00208890
rosa_rugosa	Rorug05G0568900 Rorug05G0569000 Rorug05G0569100 Rorug05G0569200 Rorug05G0569300
rosa_samantha	Rh6AG085700 Rh6AG086000 Rh6BG080000 Rh6BG080100 Rh6CG075000 Rh6CG075100 Rh6DG071900 Rh6DG072000
rosa_wichuraiana	Rw6G007690 Rw6G007700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	348
AccII	CGCG	1 cut(s)	46
AciI	CCGC	2 cut(s)	44, 68
AclWI	GGATC	1 cut(s)	94
AcuI	CTGAAG	1 cut(s)	259
AfiI	CCNNNNNNNGG	3 cut(s)	50, 229, 230
AluBI	AGCT	3 cut(s)	58, 270, 279
AluI	AGCT	3 cut(s)	58, 270, 279
Alw26I	GTCTC	1 cut(s)	112
AlwI	GGATC	1 cut(s)	94
ApeKI	GCWGC	3 cut(s)	55, 242, 270
AsuHPI	GGTGA	2 cut(s)	82, 346
BanII	GRGCYC	1 cut(s)	237
BauI	CACGAG	1 cut(s)	10
BbvI	GCAGC	3 cut(s)	67, 254, 257
BccI	CCATC	1 cut(s)	365
BcoDI	GTCTC	1 cut(s)	112
BfaI	CTAG	2 cut(s)	32, 78
BfmI	CTRYAG	1 cut(s)	362
BfuAI	ACCTGC	1 cut(s)	348
BisI	GCNGC	4 cut(s)	44, 56, 243, 271
BlsI	GCNGC	4 cut(s)	45, 57, 244, 272
BmiI	GGNNCC	2 cut(s)	135, 236
BmsI	GCATC	1 cut(s)	7
BpuEI	CTTGAG	1 cut(s)	111
BsaI	GGTCTC	1 cut(s)	112
Bsc4I	CCNNNNNNNGG	3 cut(s)	50, 229, 230
BseGI	GGATG	1 cut(s)	357
BseLI	CCNNNNNNNGG	3 cut(s)	50, 229, 230
BseMII	CTCAG	2 cut(s)	102, 231
BseXI	GCAGC	3 cut(s)	67, 254, 257
Bsh1236I	CGCG	1 cut(s)	46
BslI	CCNNNNNNNGG	3 cut(s)	50, 229, 230
BsmAI	GTCTC	1 cut(s)	112
Bso31I	GGTCTC	1 cut(s)	112
Bsp1286I	GDGCHC	1 cut(s)	237
Bsp143I	GATC	2 cut(s)	86, 148
BspACI	CCGC	2 cut(s)	44, 68
BspCNI	CTCAG	2 cut(s)	103, 230
BspFNI	CGCG	1 cut(s)	46
BspLI	GGNNCC	2 cut(s)	135, 236
BspMI	ACCTGC	1 cut(s)	348
BspPI	GGATC	1 cut(s)	94
BspTNI	GGTCTC	1 cut(s)	112
BssMI	GATC	2 cut(s)	86, 148
BssSI	CACGAG	1 cut(s)	10
Bst2BI	CACGAG	1 cut(s)	10
BstAPI	GCANNNNNTGC	1 cut(s)	349
BstC8I	GCNNGC	1 cut(s)	7
BstDEI	CTNAG	2 cut(s)	111, 217
BstF5I	GGATG	1 cut(s)	357
BstFNI	CGCG	1 cut(s)	46
BstKTI	GATC	2 cut(s)	89, 151
BstMAI	GTCTC	1 cut(s)	112
BstMBI	GATC	2 cut(s)	86, 148
BstMWI	GCNNNNNNNGC	3 cut(s)	52, 276, 349
BstSFI	CTRYAG	1 cut(s)	362
BstUI	CGCG	1 cut(s)	46
BstV1I	GCAGC	3 cut(s)	67, 254, 257
BstX2I	RGATCY	1 cut(s)	86
BstYI	RGATCY	1 cut(s)	86
BtgZI	GCGATG	1 cut(s)	30
BtsCI	GGATG	1 cut(s)	357
BveI	ACCTGC	1 cut(s)	348
Cac8I	GCNNGC	1 cut(s)	7
CviAII	CATG	1 cut(s)	331
CviJI	RGCY	5 cut(s)	58, 134, 235, 270, 279
CviKI_1	RGCY	5 cut(s)	58, 134, 235, 270, 279
DdeI	CTNAG	2 cut(s)	111, 217
DpnI	GATC	2 cut(s)	88, 150
DpnII	GATC	2 cut(s)	86, 148
Eco24I	GRGCYC	1 cut(s)	237
Eco31I	GGTCTC	1 cut(s)	112
Eco57I	CTGAAG	1 cut(s)	259
EcoT22I	ATGCAT	1 cut(s)	303
EcoT38I	GRGCYC	1 cut(s)	237
FaeI	CATG	1 cut(s)	334
FaiI	YATR	5 cut(s)	186, 299, 303, 332, 364
FatI	CATG	1 cut(s)	330
Fnu4HI	GCNGC	4 cut(s)	44, 56, 243, 271
FokI	GGATG	1 cut(s)	344
FriOI	GRGCYC	1 cut(s)	237
Fsp4HI	GCNGC	4 cut(s)	44, 56, 243, 271
FspBI	CTAG	2 cut(s)	32, 78
GluI	GCNGC	4 cut(s)	44, 56, 243, 271
Hin1II	CATG	1 cut(s)	334
HinfI	GANTC	3 cut(s)	81, 170, 213
HphI	GGTGA	2 cut(s)	82, 346
Hpy166II	GTNNAC	1 cut(s)	73
Hpy188I	TCNGA	5 cut(s)	86, 91, 112, 220, 239
Hpy188III	TCNNGA	1 cut(s)	78
Hpy8I	GTNNAC	1 cut(s)	73
HpyAV	CCTTC	1 cut(s)	109
HpyCH4V	TGCA	2 cut(s)	301, 343
HpyF10VI	GCNNNNNNNGC	3 cut(s)	52, 276, 349
HpyF3I	CTNAG	2 cut(s)	111, 217
Hsp92II	CATG	1 cut(s)	334
Kzo9I	GATC	2 cut(s)	86, 148
LmnI	GCTCC	2 cut(s)	139, 240
LpnPI	CCDG	2 cut(s)	44, 353
Lsp1109I	GCAGC	3 cut(s)	67, 254, 257
LweI	GCATC	1 cut(s)	7
MaeI	CTAG	2 cut(s)	32, 78
MalI	GATC	2 cut(s)	88, 150
MboI	GATC	2 cut(s)	86, 148
MboII	GAAGA	1 cut(s)	302
MflI	RGATCY	1 cut(s)	86
MhlI	GDGCHC	1 cut(s)	237
MluCI	AATT	2 cut(s)	63, 201
MlyI	GAGTC	1 cut(s)	90
MmeI	TCCRAC	1 cut(s)	64
MnlI	CCTC	2 cut(s)	38, 314
Mph1103I	ATGCAT	1 cut(s)	303
MseI	TTAA	1 cut(s)	120
MspA1I	CMGCKG	2 cut(s)	58, 279
MvnI	CGCG	1 cut(s)	46
MwoI	GCNNNNNNNGC	3 cut(s)	52, 276, 349
NdeII	GATC	2 cut(s)	86, 148
NlaIII	CATG	1 cut(s)	334
NlaIV	GGNNCC	2 cut(s)	135, 236
NsiI	ATGCAT	1 cut(s)	303
PfeI	GAWTC	2 cut(s)	170, 213
PkrI	GCNGC	4 cut(s)	45, 57, 244, 272
PleI	GAGTC	1 cut(s)	89
PpsI	GAGTC	1 cut(s)	89
PspN4I	GGNNCC	2 cut(s)	135, 236
PsuI	RGATCY	1 cut(s)	86
PvuII	CAGCTG	2 cut(s)	58, 279
SaqAI	TTAA	1 cut(s)	120
SatI	GCNGC	4 cut(s)	44, 56, 243, 271
Sau3AI	GATC	2 cut(s)	86, 148
SchI	GAGTC	1 cut(s)	90
SduI	GDGCHC	1 cut(s)	237
SetI	ASST	6 cut(s)	60, 120, 272, 281, 325, 342
SfaNI	GCATC	1 cut(s)	7
SfcI	CTRYAG	1 cut(s)	362
SmlI	CTYRAG	1 cut(s)	126
SmoI	CTYRAG	1 cut(s)	126
Sse9I	AATT	2 cut(s)	63, 201
SsiI	CCGC	2 cut(s)	44, 68
SspMI	CTAG	2 cut(s)	32, 78
TasI	AATT	2 cut(s)	63, 201
TauI	GCSGC	1 cut(s)	46
TfiI	GAWTC	2 cut(s)	170, 213
Tru1I	TTAA	1 cut(s)	120
Tru9I	TTAA	1 cut(s)	120
TseI	GCWGC	3 cut(s)	55, 242, 270
TspDTI	ATGAA	2 cut(s)	303, 350
XbaI	TCTAGA	1 cut(s)	77
XspI	CTAG	2 cut(s)	32, 78
Zsp2I	ATGCAT	1 cut(s)	303

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.