Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011315.1

Orthogroup ID

OG0002822

Physical Location & Seq

Genomic Coordinates Forward (+)

5632 .. 7605

Gene Structure 1974 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011315.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

atggctgggaaacagggtttgaaaagtggattgcagaccataagttccaatcataaggaaccattatttgatgtaaaggaacttcgttccattgcaccaatagaccataagcaacagtttgatattcgttcagttattgctcgcattgtcgacggaagcgaatttgatgaattcaagaaattgtatggcactactcttgtgacaggttttgctagaatcttcggacagcctgttggaattgttggaaacaatgggatattatttaatgaatctgctctaaaaggtgcccacttcattgaattatgtactcaacgaaatattactttgatcttccttcagaacatcaccggatttatggttggctcgagatctgaagcagacggaatagcaaaatctggagcaaaaatggtgatggcagtttcttgtgccaaggttcccaaagttactattcttgttggtggaagctttggcgctggcaattatgcaatgtgtggtcgtgcttttagtcccgatttcacgttcatttggccgaatgccaaaatatctgtgatgggtggtgctcaggctgctggtgtcctttcccaaatagaaaggagcaagaagaaaatgcaaggaattgagtgggacaaggaagaagagaagtttaaggcaaaggtagtagaggcatttgagagagaaggaaactcttattactccacagcaaggctctgggatgatgggattattgatccagctgacactagaaaagtcataggtctctccatctctgcctgtatgaaccgtgacccagaagaaaccaagtacggtgtattccgaatgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006082 GO:0006520 GO:0006551 GO:0006552 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009056 GO:0009063 GO:0009081 GO:0009083 GO:0009987 GO:0016054 GO:0019752 GO:0031974 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046395 GO:0046872 GO:0046914 GO:0050897 GO:0070013 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606

KEGG Pathways

Metabolic & Signaling

ko00280 ko01100 map00280 map01100

Pfam Domains

Protein Families

Carboxyl_trans

Protein Analysis

273

Amino Acids

29.91

Weight (kDa)

8.94

Isoelectric Point (pI)

43.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002822)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34030
fragaria_vesca	FvH4_2g05870 FvH4_2g05870 FvH4_2g05870 FvH4_2g05870 FvH4_2g05870 FvH4_2g05870
malus_domestica	MD05G1082300.v1.1
prunus_persica	Prupe.8G126800_v2.0.a1
pyrus_communis	pycom05g07710 pycom05g07720
rosa_chinensis	RchiOBHm_Chr6g0257681 RchiOBHm_Chr6g0257701
rosa_laevigata	RLG00000014716 RLG00000014717
rosa_multiflora	Rmu_sc0000916.1_g000002 Rmu_sc0006683.1_g000009 Rmu_sc0006683.1_g000013 Rmu_sc0006683.1_g000018 Rmu_sc0011315.1_g000001 Rmu_sc0011315.1_g000004 Rmu_sc0026590.1_g000002
rosa_roxburghii	Rroxscaffold_7G00208880 Rroxscaffold_7G00208890
rosa_rugosa	Rorug05G0568900 Rorug05G0569000 Rorug05G0569100 Rorug05G0569200 Rorug05G0569300
rosa_samantha	Rh6AG085700 Rh6AG086000 Rh6BG080000 Rh6BG080100 Rh6CG075000 Rh6CG075100 Rh6DG071900 Rh6DG072000
rosa_wichuraiana	Rw6G007690 Rw6G007700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	284
AccI	GTMKAC	1 cut(s)	150
AclWI	GGATC	1 cut(s)	722
AcoI	YGGCCR	1 cut(s)	527
AcsI	RAATTY	2 cut(s)	161, 170
AcuI	CTGAAG	2 cut(s)	320, 393
AfaI	GTAC	2 cut(s)	307, 803
AfiI	CCNNNNNNNGG	1 cut(s)	702
AgsI	TTSAA	3 cut(s)	22, 175, 299
AluBI	AGCT	2 cut(s)	465, 734
AluI	AGCT	2 cut(s)	465, 734
Alw21I	GWGCWC	1 cut(s)	562
Alw26I	GTCTC	1 cut(s)	761
AlwI	GGATC	1 cut(s)	722
Ama87I	CYCGRG	1 cut(s)	364
AoxI	GGCC	1 cut(s)	527
ApeKI	GCWGC	1 cut(s)	566
ApoI	RAATTY	2 cut(s)	161, 170
AspLEI	GCGC	1 cut(s)	473
AsuHPI	GGTGA	2 cut(s)	337, 421
AvaI	CYCGRG	1 cut(s)	364
BaeGI	GKGCMC	1 cut(s)	289
BanI	GGYRCC	1 cut(s)	284
BarI	GAAGNNNNNNTAC	2 cut(s)	66, 98
Bbv12I	GWGCWC	1 cut(s)	562
BbvI	GCAGC	1 cut(s)	553
BccI	CCATC	4 cut(s)	406, 544, 710, 770
BcoDI	GTCTC	1 cut(s)	761
BfaI	CTAG	2 cut(s)	213, 741
BfoI	RGCGCY	1 cut(s)	474
BglII	AGATCT	1 cut(s)	368
BisI	GCNGC	1 cut(s)	567
BlsI	GCNGC	1 cut(s)	568
BmeT110I	CYCGRG	1 cut(s)	364
BmiI	GGNNCC	3 cut(s)	60, 286, 435
BpmI	CTGGAG	1 cut(s)	417
Bpu10I	CCTNAGC	1 cut(s)	561
BsaI	GGTCTC	1 cut(s)	761
BsaJI	CCNNGG	1 cut(s)	429
BsaWI	WCCGGW	1 cut(s)	347
Bsc4I	CCNNNNNNNGG	1 cut(s)	702
Bse3DI	GCAATG	2 cut(s)	90, 492
BseDI	CCNNGG	1 cut(s)	429
BseGI	GGATG	1 cut(s)	718
BseLI	CCNNNNNNNGG	1 cut(s)	702
BseMI	GCAATG	2 cut(s)	90, 492
BseMII	CTCAG	1 cut(s)	575
BseSI	GKGCMC	1 cut(s)	289
BseXI	GCAGC	1 cut(s)	553
BseYI	CCCAGC	1 cut(s)	5
BshFI	GGCC	1 cut(s)	529
BshNI	GGYRCC	1 cut(s)	284
BsiHKAI	GWGCWC	1 cut(s)	562
BsiHKCI	CYCGRG	1 cut(s)	364
BsiSI	CCGG	1 cut(s)	348
BslFI	GGGAC	2 cut(s)	492, 638
BslI	CCNNNNNNNGG	1 cut(s)	702
BsmAI	GTCTC	1 cut(s)	761
BsmFI	GGGAC	2 cut(s)	492, 638
BsmI	GAATGC	1 cut(s)	538
BsnI	GGCC	1 cut(s)	529
Bso31I	GGTCTC	1 cut(s)	761
BsoBI	CYCGRG	1 cut(s)	364
Bsp1286I	GDGCHC	2 cut(s)	289, 562
Bsp143I	GATC	3 cut(s)	327, 368, 727
BspANI	GGCC	1 cut(s)	529
BspCNI	CTCAG	1 cut(s)	574
BspLI	GGNNCC	3 cut(s)	60, 286, 435
BspPI	GGATC	1 cut(s)	722
BspT107I	GGYRCC	1 cut(s)	284
BspTNI	GGTCTC	1 cut(s)	761
BsrDI	GCAATG	2 cut(s)	90, 492
BssECI	CCNNGG	1 cut(s)	429
BssMI	GATC	3 cut(s)	327, 368, 727
BssT1I	CCWWGG	1 cut(s)	429
Bst4CI	ACNGT	3 cut(s)	117, 782, 806
Bst6I	CTCTTC	1 cut(s)	630
BstC8I	GCNNGC	2 cut(s)	142, 475
BstDEI	CTNAG	1 cut(s)	561
BstF5I	GGATG	1 cut(s)	718
BstH2I	RGCGCY	1 cut(s)	474
BstHHI	GCGC	1 cut(s)	473
BstKTI	GATC	3 cut(s)	330, 371, 730
BstMAI	GTCTC	1 cut(s)	761
BstMBI	GATC	3 cut(s)	327, 368, 727
BstMWI	GCNNNNNNNGC	1 cut(s)	566
BstSLI	GKGCMC	1 cut(s)	289
BstV1I	GCAGC	1 cut(s)	553
BstX2I	RGATCY	1 cut(s)	368
BstYI	RGATCY	1 cut(s)	368
BsuRI	GGCC	1 cut(s)	529
BtsCI	GGATG	1 cut(s)	718
Cac8I	GCNNGC	2 cut(s)	142, 475
CfoI	GCGC	1 cut(s)	473
Csp6I	GTAC	2 cut(s)	306, 802
CviJI	RGCY	8 cut(s)	5, 229, 363, 465, 529, 566, 706, 734
CviKI_1	RGCY	8 cut(s)	5, 229, 363, 465, 529, 566, 706, 734
CviQI	GTAC	2 cut(s)	306, 802
DdeI	CTNAG	1 cut(s)	561
DpnI	GATC	3 cut(s)	329, 370, 729
DpnII	GATC	3 cut(s)	327, 368, 727
EaeI	YGGCCR	1 cut(s)	527
Eam1104I	CTCTTC	1 cut(s)	630
EarI	CTCTTC	1 cut(s)	630
Eco130I	CCWWGG	1 cut(s)	429
Eco31I	GGTCTC	1 cut(s)	761
Eco57I	CTGAAG	2 cut(s)	320, 393
Eco88I	CYCGRG	1 cut(s)	364
EcoRI	GAATTC	1 cut(s)	170
EcoT14I	CCWWGG	1 cut(s)	429
ErhI	CCWWGG	1 cut(s)	429
FaiI	YATR	9 cut(s)	41, 54, 108, 186, 304, 356, 483, 752, 776
FaqI	GGGAC	2 cut(s)	492, 638
FblI	GTMKAC	1 cut(s)	150
Fnu4HI	GCNGC	1 cut(s)	567
FokI	GGATG	1 cut(s)	725
Fsp4HI	GCNGC	1 cut(s)	567
FspBI	CTAG	2 cut(s)	213, 741
GlaI	GCGC	1 cut(s)	472
GluI	GCNGC	1 cut(s)	567
GsaI	CCCAGC	1 cut(s)	9
GsuI	CTGGAG	1 cut(s)	417
HaeII	RGCGCY	1 cut(s)	474
HaeIII	GGCC	1 cut(s)	529
HapII	CCGG	1 cut(s)	348
HhaI	GCGC	1 cut(s)	473
Hin6I	GCGC	1 cut(s)	471
HinP1I	GCGC	1 cut(s)	471
HincII	GTYRAC	1 cut(s)	151
HindII	GTYRAC	1 cut(s)	151
HindIII	AAGCTT	1 cut(s)	463
HinfI	GANTC	2 cut(s)	216, 269
HpaII	CCGG	1 cut(s)	348
HphI	GGTGA	2 cut(s)	337, 421
Hpy166II	GTNNAC	1 cut(s)	151
Hpy188I	TCNGA	4 cut(s)	224, 339, 373, 815
Hpy188III	TCNNGA	4 cut(s)	175, 366, 396, 509
Hpy8I	GTNNAC	1 cut(s)	151
Hpy99I	CGWCG	1 cut(s)	155
HpyAV	CCTTC	2 cut(s)	344, 671
HpyCH4III	ACNGT	3 cut(s)	117, 782, 806
HpyCH4IV	ACGT	1 cut(s)	518
HpyCH4V	TGCA	4 cut(s)	34, 95, 485, 610
HpyF10VI	GCNNNNNNNGC	1 cut(s)	566
HpyF3I	CTNAG	1 cut(s)	561
HpySE526I	ACGT	1 cut(s)	518
HspAI	GCGC	1 cut(s)	471
Kzo9I	GATC	3 cut(s)	327, 368, 727
LmnI	GCTCC	2 cut(s)	398, 594
Lsp1109I	GCAGC	1 cut(s)	553
MaeI	CTAG	2 cut(s)	213, 741
MaeII	ACGT	1 cut(s)	518
MaeIII	GTNAC	3 cut(s)	199, 442, 782
MalI	GATC	3 cut(s)	329, 370, 729
MboI	GATC	3 cut(s)	327, 368, 727
MboII	GAAGA	6 cut(s)	211, 322, 613, 644, 647, 803
MflI	RGATCY	1 cut(s)	368
MhlI	GDGCHC	2 cut(s)	289, 562
MluCI	AATT	7 cut(s)	161, 170, 179, 237, 299, 478, 615
MmeI	TCCRAC	2 cut(s)	214, 223
MnlI	CCTC	1 cut(s)	655
MseI	TTAA	2 cut(s)	264, 645
MspA1I	CMGCKG	1 cut(s)	734
MspI	CCGG	1 cut(s)	348
Mva1269I	GAATGC	1 cut(s)	538
MwoI	GCNNNNNNNGC	1 cut(s)	566
NdeII	GATC	3 cut(s)	327, 368, 727
NlaIV	GGNNCC	3 cut(s)	60, 286, 435
NmuCI	GTSAC	2 cut(s)	199, 782
PaeR7I	CTCGAG	1 cut(s)	364
PcsI	WCGNNNNNNNCGW	1 cut(s)	156
PctI	GAATGC	1 cut(s)	538
PfeI	GAWTC	2 cut(s)	216, 269
PkrI	GCNGC	1 cut(s)	568
PspFI	CCCAGC	1 cut(s)	5
PspN4I	GGNNCC	3 cut(s)	60, 286, 435
PsuI	RGATCY	1 cut(s)	368
PvuII	CAGCTG	1 cut(s)	734
RsaI	GTAC	2 cut(s)	307, 803
RsaNI	GTAC	2 cut(s)	306, 802
SalI	GTCGAC	1 cut(s)	149
SaqAI	TTAA	2 cut(s)	264, 645
SatI	GCNGC	1 cut(s)	567
Sau3AI	GATC	3 cut(s)	327, 368, 727
SduI	GDGCHC	2 cut(s)	289, 562
SetI	ASST	8 cut(s)	208, 286, 435, 467, 521, 657, 736, 757
Sfr274I	CTCGAG	1 cut(s)	364
SlaI	CTCGAG	1 cut(s)	364
SmlI	CTYRAG	1 cut(s)	364
SmoI	CTYRAG	1 cut(s)	364
Sse9I	AATT	7 cut(s)	161, 170, 179, 237, 299, 478, 615
SspI	AATATT	1 cut(s)	319
SspMI	CTAG	2 cut(s)	213, 741
StyI	CCWWGG	1 cut(s)	429
TaaI	ACNGT	3 cut(s)	117, 782, 806
TaiI	ACGT	1 cut(s)	521
TaqI	TCGA	2 cut(s)	150, 365
TasI	AATT	7 cut(s)	161, 170, 179, 237, 299, 478, 615
TatI	WGTACW	1 cut(s)	305
TfiI	GAWTC	2 cut(s)	216, 269
Tru1I	TTAA	2 cut(s)	264, 645
Tru9I	TTAA	2 cut(s)	264, 645
TseFI	GTSAC	2 cut(s)	199, 782
TseI	GCWGC	1 cut(s)	566
Tsp45I	GTSAC	2 cut(s)	199, 782
TspDTI	ATGAA	5 cut(s)	183, 282, 283, 511, 791
TspGWI	ACGGA	2 cut(s)	168, 396
XapI	RAATTY	2 cut(s)	161, 170
XhoI	CTCGAG	1 cut(s)	364
XmiI	GTMKAC	1 cut(s)	150
XspI	CTAG	2 cut(s)	213, 741

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.