Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006683.1

Orthogroup ID

OG0002822

Physical Location & Seq

Genomic Coordinates Reverse (-)

46575 .. 48582

Gene Structure 2008 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006683.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

atgtgtcgatcggttcttgaggctgagaatggtgataggaaagtttccaattatcttgatctgttatggattaacaaggttggttctaacaccaaccccatgctgtttcgttgcagttccgaggccttttctcggaattcaaatgccatgaatctcttaatctccgacctccaatcccacatccaaaaggtttttgctggaggaggagctgcagctgtgaagaggaacaagaggaggaataagctccttcctcgagaacgcattgatcgcttgcttgatcctggccatgaactatatgaaggcacattaccatatgctgggatcattactggaattggtcctgtccatgggaggctttgtatgtttgtggctaatgatcctactgttaagggtgggacttattatcccatcactgttaagaaacacctcagggcacaagaaattgccactcgatgcaagttaccatgtgtatatcttgttgatagcggaggggcttttcttcccaaacaggcagaggtctttcctgacaaggagaattttggtagaaccttgtacaatcaatctgtaatgtcagccgaaggtattcctcaaattgcactggtattgggctcttgcactggcggcggtgcctatattcctgcaatggctgatgaaagtgtgatggtcaaaggaaatggtaccatgtttttagcaggacccccacttgtgaaggctgccactggagaagaagtatcggcggaggatttggggggtgctagcgtgcattgcaagacttcaggattgtcagagtattatgctcaaggtatttcacttgtccagttccgtactttgaacctgtttgcatttctttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006082 GO:0006520 GO:0006551 GO:0006552 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009056 GO:0009063 GO:0009081 GO:0009083 GO:0009987 GO:0016054 GO:0019752 GO:0031974 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046395 GO:0046872 GO:0046914 GO:0050897 GO:0070013 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606

KEGG Pathways

Metabolic & Signaling

ko00280 ko01100 map00280 map01100

Pfam Domains

Protein Families

Carboxyl_trans

Protein Analysis

283

Amino Acids

30.61

Weight (kDa)

8.77

Isoelectric Point (pI)

37.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002822)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34030
fragaria_vesca	FvH4_2g05870 FvH4_2g05870 FvH4_2g05870 FvH4_2g05870 FvH4_2g05870 FvH4_2g05870
malus_domestica	MD05G1082300.v1.1
prunus_persica	Prupe.8G126800_v2.0.a1
pyrus_communis	pycom05g07710 pycom05g07720
rosa_chinensis	RchiOBHm_Chr6g0257681 RchiOBHm_Chr6g0257701
rosa_laevigata	RLG00000014716 RLG00000014717
rosa_multiflora	Rmu_sc0000916.1_g000002 Rmu_sc0006683.1_g000009 Rmu_sc0006683.1_g000013 Rmu_sc0006683.1_g000018 Rmu_sc0011315.1_g000001 Rmu_sc0011315.1_g000004 Rmu_sc0026590.1_g000002
rosa_roxburghii	Rroxscaffold_7G00208880 Rroxscaffold_7G00208890
rosa_rugosa	Rorug05G0568900 Rorug05G0569000 Rorug05G0569100 Rorug05G0569200 Rorug05G0569300
rosa_samantha	Rh6AG085700 Rh6AG086000 Rh6BG080000 Rh6BG080100 Rh6CG075000 Rh6CG075100 Rh6DG071900 Rh6DG072000
rosa_wichuraiana	Rw6G007690 Rw6G007700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	677
AccB1I	GGYRCC	2 cut(s)	626, 677
AccB7I	CCANNNNNTGG	1 cut(s)	317
AciI	CCGC	4 cut(s)	486, 621, 624, 737
AclWI	GGATC	3 cut(s)	272, 329, 371
AcoI	YGGCCR	1 cut(s)	283
AcsI	RAATTY	2 cut(s)	136, 535
AcuI	CTGAAG	1 cut(s)	759
AfaI	GTAC	3 cut(s)	554, 679, 826
AfiI	CCNNNNNNNGG	3 cut(s)	132, 317, 347
AgsI	TTSAA	2 cut(s)	141, 832
AjnI	CCWGG	1 cut(s)	280
AluBI	AGCT	3 cut(s)	209, 215, 244
AluI	AGCT	3 cut(s)	209, 215, 244
AlwI	GGATC	3 cut(s)	272, 329, 371
Ama87I	CYCGRG	1 cut(s)	252
AoxI	GGCC	2 cut(s)	123, 283
ApeKI	GCWGC	3 cut(s)	209, 212, 713
ApoI	RAATTY	2 cut(s)	136, 535
Asp700I	GAANNNNTTC	1 cut(s)	582
Asp718I	GGTACC	1 cut(s)	677
AspS9I	GGNCC	2 cut(s)	338, 695
AsuHPI	GGTGA	1 cut(s)	44
AsuNHI	GCTAGC	1 cut(s)	755
AvaI	CYCGRG	1 cut(s)	252
AvaII	GGWCC	2 cut(s)	338, 695
AxyI	CCTNAGG	1 cut(s)	428
BaeGI	GKGCMC	1 cut(s)	436
BalI	TGGCCA	1 cut(s)	285
BanI	GGYRCC	2 cut(s)	626, 677
BanII	GRGCYC	1 cut(s)	611
BarI	GAAGNNNNNNTAC	2 cut(s)	291, 323
BbvI	GCAGC	3 cut(s)	196, 224, 700
BccI	CCATC	2 cut(s)	416, 655
BciT130I	CCWGG	1 cut(s)	282
BfaI	CTAG	1 cut(s)	756
BfmI	CTRYAG	1 cut(s)	210
BisI	GCNGC	4 cut(s)	210, 213, 622, 714
BlsI	GCNGC	4 cut(s)	211, 214, 623, 715
Bme1390I	CCNGG	1 cut(s)	282
Bme18I	GGWCC	2 cut(s)	338, 695
BmeT110I	CYCGRG	1 cut(s)	252
BmgT120I	GGNCC	2 cut(s)	338, 695
BmiI	GGNNCC	3 cut(s)	628, 679, 697
BmrFI	CCNGG	1 cut(s)	282
BmsI	GCATC	1 cut(s)	443
BmtI	GCTAGC	1 cut(s)	759
BpmI	CTGGAG	2 cut(s)	219, 741
BpuEI	CTTGAG	2 cut(s)	38, 783
BsaJI	CCNNGG	2 cut(s)	120, 346
BsaXI	ACNNNNNCTCC	4 cut(s)	343, 373, 714, 744
Bsc4I	CCNNNNNNNGG	3 cut(s)	132, 317, 347
Bse1I	ACTGG	5 cut(s)	334, 603, 622, 724, 817
Bse21I	CCTNAGG	1 cut(s)	428
Bse3DI	GCAATG	2 cut(s)	648, 763
BseBI	CCWGG	1 cut(s)	282
BseDI	CCNNGG	2 cut(s)	120, 346
BseGI	GGATG	1 cut(s)	180
BseLI	CCNNNNNNNGG	3 cut(s)	132, 317, 347
BseMI	GCAATG	2 cut(s)	648, 763
BseMII	CTCAG	2 cut(s)	15, 442
BseNI	ACTGG	5 cut(s)	334, 603, 622, 724, 817
BseRI	GAGGAG	3 cut(s)	216, 219, 247
BseSI	GKGCMC	1 cut(s)	436
BseXI	GCAGC	3 cut(s)	196, 224, 700
BseYI	CCCAGC	1 cut(s)	317
Bsh1285I	CGRYCG	1 cut(s)	11
BshFI	GGCC	2 cut(s)	125, 285
BshNI	GGYRCC	2 cut(s)	626, 677
BsiEI	CGRYCG	1 cut(s)	11
BsiHKCI	CYCGRG	1 cut(s)	252
BslFI	GGGAC	1 cut(s)	409
BslI	CCNNNNNNNGG	3 cut(s)	132, 317, 347
BsmFI	GGGAC	1 cut(s)	409
BsnI	GGCC	2 cut(s)	125, 285
BsoBI	CYCGRG	1 cut(s)	252
Bsp1286I	GDGCHC	2 cut(s)	436, 611
Bsp1407I	TGTACA	1 cut(s)	552
Bsp143I	GATC	6 cut(s)	8, 58, 265, 277, 321, 376
Bsp19I	CCATGG	1 cut(s)	346
BspACI	CCGC	4 cut(s)	486, 621, 624, 737
BspANI	GGCC	2 cut(s)	125, 285
BspCNI	CTCAG	2 cut(s)	16, 441
BspLI	GGNNCC	3 cut(s)	628, 679, 697
BspMAI	CTGCAG	1 cut(s)	214
BspOI	GCTAGC	1 cut(s)	759
BspPI	GGATC	3 cut(s)	272, 329, 371
BspT107I	GGYRCC	2 cut(s)	626, 677
BsrDI	GCAATG	2 cut(s)	648, 763
BsrGI	TGTACA	1 cut(s)	552
BsrI	ACTGG	5 cut(s)	334, 603, 622, 724, 817
BssECI	CCNNGG	2 cut(s)	120, 346
BssMI	GATC	6 cut(s)	8, 58, 265, 277, 321, 376
BssT1I	CCWWGG	1 cut(s)	346
Bst2UI	CCWGG	1 cut(s)	282
Bst4CI	ACNGT	2 cut(s)	385, 415
Bst6I	CTCTTC	1 cut(s)	215
BstAUI	TGTACA	1 cut(s)	552
BstC8I	GCNNGC	3 cut(s)	272, 757, 761
BstDEI	CTNAG	2 cut(s)	24, 428
BstDSI	CCRYGG	1 cut(s)	346
BstF5I	GGATG	1 cut(s)	180
BstKTI	GATC	6 cut(s)	11, 61, 268, 280, 324, 379
BstMBI	GATC	6 cut(s)	8, 58, 265, 277, 321, 376
BstMCI	CGRYCG	1 cut(s)	11
BstMWI	GCNNNNNNNGC	3 cut(s)	267, 621, 765
BstNI	CCWGG	1 cut(s)	282
BstSCI	CCNGG	1 cut(s)	280
BstSFI	CTRYAG	1 cut(s)	210
BstSLI	GKGCMC	1 cut(s)	436
BstV1I	GCAGC	3 cut(s)	196, 224, 700
Bsu36I	CCTNAGG	1 cut(s)	428
BsuRI	GGCC	2 cut(s)	125, 285
BtgI	CCRYGG	1 cut(s)	346
BtsCI	GGATG	1 cut(s)	180
BtsIMutI	CAGTG	4 cut(s)	411, 596, 615, 717
Cac8I	GCNNGC	3 cut(s)	272, 757, 761
Cfr13I	GGNCC	2 cut(s)	338, 695
Csp6I	GTAC	3 cut(s)	553, 678, 825
CviAII	CATG	6 cut(s)	100, 148, 287, 347, 465, 682
CviQI	GTAC	3 cut(s)	553, 678, 825
DdeI	CTNAG	2 cut(s)	24, 428
DpnI	GATC	6 cut(s)	10, 60, 267, 279, 323, 378
DpnII	GATC	6 cut(s)	8, 58, 265, 277, 321, 376
EaeI	YGGCCR	1 cut(s)	283
Eam1104I	CTCTTC	1 cut(s)	215
EarI	CTCTTC	1 cut(s)	215
EciI	GGCGGA	1 cut(s)	752
Eco130I	CCWWGG	1 cut(s)	346
Eco147I	AGGCCT	1 cut(s)	125
Eco24I	GRGCYC	1 cut(s)	611
Eco47I	GGWCC	2 cut(s)	338, 695
Eco57I	CTGAAG	1 cut(s)	759
Eco81I	CCTNAGG	1 cut(s)	428
Eco88I	CYCGRG	1 cut(s)	252
EcoO109I	RGGNCCY	1 cut(s)	695
EcoRI	GAATTC	1 cut(s)	136
EcoRII	CCWGG	1 cut(s)	280
EcoT14I	CCWWGG	1 cut(s)	346
EcoT38I	GRGCYC	1 cut(s)	611
ErhI	CCWWGG	1 cut(s)	346
FaeI	CATG	6 cut(s)	103, 151, 290, 350, 468, 685
FaqI	GGGAC	1 cut(s)	409
FatI	CATG	6 cut(s)	99, 147, 286, 346, 464, 681
FauNDI	CATATG	1 cut(s)	313
Fnu4HI	GCNGC	4 cut(s)	210, 213, 622, 714
FokI	GGATG	1 cut(s)	167
FriOI	GRGCYC	1 cut(s)	611
Fsp4HI	GCNGC	4 cut(s)	210, 213, 622, 714
FspBI	CTAG	1 cut(s)	756
GluI	GCNGC	4 cut(s)	210, 213, 622, 714
GsaI	CCCAGC	1 cut(s)	321
GsuI	CTGGAG	2 cut(s)	219, 741
HaeIII	GGCC	2 cut(s)	125, 285
Hin1II	CATG	6 cut(s)	103, 151, 290, 350, 468, 685
HinfI	GANTC	1 cut(s)	151
HphI	GGTGA	1 cut(s)	44
Hpy188I	TCNGA	4 cut(s)	121, 135, 166, 787
Hpy188III	TCNNGA	5 cut(s)	17, 56, 254, 524, 777
HpyAV	CCTTC	4 cut(s)	257, 293, 572, 703
HpyCH4III	ACNGT	2 cut(s)	385, 415
HpyCH4V	TGCA	9 cut(s)	114, 212, 456, 596, 615, 641, 763, 768, 842
HpyF10VI	GCNNNNNNNGC	3 cut(s)	267, 621, 765
HpyF3I	CTNAG	2 cut(s)	24, 428
Hsp92II	CATG	6 cut(s)	103, 151, 290, 350, 468, 685
KpnI	GGTACC	1 cut(s)	681
Kzo9I	GATC	6 cut(s)	8, 58, 265, 277, 321, 376
LmnI	GCTCC	2 cut(s)	206, 249
Lsp1109I	GCAGC	3 cut(s)	196, 224, 700
LweI	GCATC	1 cut(s)	443
MaeI	CTAG	1 cut(s)	756
MaeIII	GTNAC	1 cut(s)	459
MalI	GATC	6 cut(s)	10, 60, 267, 279, 323, 378
MboI	GATC	6 cut(s)	8, 58, 265, 277, 321, 376
MboII	GAAGA	3 cut(s)	232, 491, 737
MhlI	GDGCHC	2 cut(s)	436, 611
MlsI	TGGCCA	1 cut(s)	285
MluCI	AATT	6 cut(s)	49, 136, 333, 441, 535, 591
MluNI	TGGCCA	1 cut(s)	285
MmeI	TCCRAC	1 cut(s)	189
Mox20I	TGGCCA	1 cut(s)	285
MroXI	GAANNNNTTC	1 cut(s)	582
MscI	TGGCCA	1 cut(s)	285
MseI	TTAA	4 cut(s)	72, 158, 387, 417
Msp20I	TGGCCA	1 cut(s)	285
MspA1I	CMGCKG	1 cut(s)	215
MspR9I	CCNGG	1 cut(s)	282
MvaI	CCWGG	1 cut(s)	282
MwoI	GCNNNNNNNGC	3 cut(s)	267, 621, 765
NcoI	CCATGG	1 cut(s)	346
NdeI	CATATG	1 cut(s)	313
NdeII	GATC	6 cut(s)	8, 58, 265, 277, 321, 376
NheI	GCTAGC	1 cut(s)	755
NlaIII	CATG	6 cut(s)	103, 151, 290, 350, 468, 685
NlaIV	GGNNCC	3 cut(s)	628, 679, 697
PaeR7I	CTCGAG	1 cut(s)	252
PceI	AGGCCT	1 cut(s)	125
PdmI	GAANNNNTTC	1 cut(s)	582
PfeI	GAWTC	1 cut(s)	151
PflMI	CCANNNNNTGG	1 cut(s)	317
PkrI	GCNGC	4 cut(s)	211, 214, 623, 715
Ple19I	CGATCG	1 cut(s)	11
PpuMI	RGGWCCY	1 cut(s)	695
Psp5II	RGGWCCY	1 cut(s)	695
Psp6I	CCWGG	1 cut(s)	280
PspFI	CCCAGC	1 cut(s)	317
PspGI	CCWGG	1 cut(s)	280
PspN4I	GGNNCC	3 cut(s)	628, 679, 697
PspPI	GGNCC	2 cut(s)	338, 695
PspPPI	RGGWCCY	1 cut(s)	695
PstI	CTGCAG	1 cut(s)	214
PvuI	CGATCG	1 cut(s)	11
PvuII	CAGCTG	1 cut(s)	215
RsaI	GTAC	3 cut(s)	554, 679, 826
RsaNI	GTAC	3 cut(s)	553, 678, 825
SaqAI	TTAA	4 cut(s)	72, 158, 387, 417
SatI	GCNGC	4 cut(s)	210, 213, 622, 714
Sau3AI	GATC	6 cut(s)	8, 58, 265, 277, 321, 376
Sau96I	GGNCC	2 cut(s)	338, 695
ScrFI	CCNGG	1 cut(s)	282
SduI	GDGCHC	2 cut(s)	436, 611
SfaNI	GCATC	1 cut(s)	443
SfcI	CTRYAG	1 cut(s)	210
Sfr274I	CTCGAG	1 cut(s)	252
SinI	GGWCC	2 cut(s)	338, 695
SlaI	CTCGAG	1 cut(s)	252
SmlI	CTYRAG	3 cut(s)	17, 252, 798
SmoI	CTYRAG	3 cut(s)	17, 252, 798
Sse9I	AATT	6 cut(s)	49, 136, 333, 441, 535, 591
SseBI	AGGCCT	1 cut(s)	125
SsiI	CCGC	4 cut(s)	486, 621, 624, 737
SspMI	CTAG	1 cut(s)	756
StuI	AGGCCT	1 cut(s)	125
StyD4I	CCNGG	1 cut(s)	280
StyI	CCWWGG	1 cut(s)	346
TaaI	ACNGT	2 cut(s)	385, 415
TaqI	TCGA	3 cut(s)	7, 253, 451
TasI	AATT	6 cut(s)	49, 136, 333, 441, 535, 591
TatI	WGTACW	1 cut(s)	552
TauI	GCSGC	1 cut(s)	624
TfiI	GAWTC	1 cut(s)	151
Tru1I	TTAA	4 cut(s)	72, 158, 387, 417
Tru9I	TTAA	4 cut(s)	72, 158, 387, 417
TscAI	CASTG	4 cut(s)	418, 603, 622, 724
TseI	GCWGC	3 cut(s)	209, 212, 713
TspDTI	ATGAA	4 cut(s)	164, 303, 312, 666
TspGWI	ACGGA	1 cut(s)	812
TspRI	CASTG	4 cut(s)	418, 603, 622, 724
Van91I	CCANNNNNTGG	1 cut(s)	317
VpaK11BI	GGWCC	2 cut(s)	338, 695
XapI	RAATTY	2 cut(s)	136, 535
XhoI	CTCGAG	1 cut(s)	252
XmnI	GAANNNNTTC	1 cut(s)	582
XspI	CTAG	1 cut(s)	756

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.