Rorug05G0569200

carboxylase beta chain

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Reverse (-)
76237129 .. 76238059
931 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0569200.1

Sequence Viewer

Length: 225 bp
ATGTGCACAGGAACGGGAAAAAGATGCAGTGGGTGTGCGTTGGCTTGTTTGCGCAGCAGGGATGCTTCGGTGGCAGCAGGCTGGAACGCAGGGGGCTGCAGGGAGGGGACAGCAGGAGCTGCTGTGCAAGATATTGGGAACAGTGTGCAATCAAAATTTGAAAGTGCTTTGAATTCAGATGACGACTTTATCAAACCTACAGCAAACGGCGGCCACAATTTCTAG

Protein Analysis

74

Amino Acids

7.48

Weight (kDa)

6.51

Isoelectric Point (pI)

44.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 53
AciI CCGC 1 cut(s) 210
AcoI YGGCCR 1 cut(s) 211
AcsI RAATTY 2 cut(s) 155, 172
AgsI TTSAA 2 cut(s) 161, 172
AluBI AGCT 1 cut(s) 119
AluI AGCT 1 cut(s) 119
Alw21I GWGCWC 1 cut(s) 8
Alw44I GTGCAC 1 cut(s) 4
AlwNI CAGNNNCTG 1 cut(s) 119
AoxI GGCC 1 cut(s) 211
ApaLI GTGCAC 1 cut(s) 4
ApeKI GCWGC 4 cut(s) 54, 74, 96, 119
ApoI RAATTY 2 cut(s) 155, 172
AspLEI GCGC 1 cut(s) 54
BaeGI GKGCMC 1 cut(s) 8
Bbv12I GWGCWC 1 cut(s) 8
BbvI GCAGC 4 cut(s) 66, 83, 86, 106
BceAI ACGGC 1 cut(s) 223
BfaI CTAG 1 cut(s) 223
BfmI CTRYAG 2 cut(s) 97, 198
BisI GCNGC 5 cut(s) 55, 75, 97, 120, 211
BlsI GCNGC 5 cut(s) 56, 76, 98, 121, 212
BmsI GCATC 2 cut(s) 14, 52
BsaXI ACNNNNNCTCC 2 cut(s) 108, 138
BseGI GGATG 1 cut(s) 67
BseSI GKGCMC 1 cut(s) 8
BseXI GCAGC 4 cut(s) 66, 83, 86, 106
BshFI GGCC 1 cut(s) 213
BsiHKAI GWGCWC 1 cut(s) 8
BslFI GGGAC 1 cut(s) 121
BsmFI GGGAC 1 cut(s) 121
BsnI GGCC 1 cut(s) 213
Bsp1286I GDGCHC 1 cut(s) 8
BspACI CCGC 1 cut(s) 210
BspANI GGCC 1 cut(s) 213
BspMAI CTGCAG 1 cut(s) 101
Bst4CI ACNGT 1 cut(s) 143
BstAPI GCANNNNNTGC 1 cut(s) 119
BstC8I GCNNGC 1 cut(s) 79
BstF5I GGATG 1 cut(s) 67
BstHHI GCGC 1 cut(s) 54
BstMWI GCNNNNNNNGC 2 cut(s) 71, 119
BstSFI CTRYAG 2 cut(s) 97, 198
BstSLI GKGCMC 1 cut(s) 8
BstV1I GCAGC 4 cut(s) 66, 83, 86, 106
BsuRI GGCC 1 cut(s) 213
BtsCI GGATG 1 cut(s) 67
BtsI GCAGTG 1 cut(s) 34
BtsIMutI CAGTG 2 cut(s) 34, 148
Cac8I GCNNGC 1 cut(s) 79
CaiI CAGNNNCTG 1 cut(s) 119
CfoI GCGC 1 cut(s) 54
CviJI RGCY 5 cut(s) 44, 81, 96, 119, 213
CviKI_1 RGCY 5 cut(s) 44, 81, 96, 119, 213
EaeI YGGCCR 1 cut(s) 211
EcoRI GAATTC 1 cut(s) 172
FaqI GGGAC 1 cut(s) 121
Fnu4HI GCNGC 5 cut(s) 55, 75, 97, 120, 211
FokI GGATG 1 cut(s) 74
Fsp4HI GCNGC 5 cut(s) 55, 75, 97, 120, 211
FspBI CTAG 1 cut(s) 223
FspI TGCGCA 1 cut(s) 53
GlaI GCGC 1 cut(s) 53
GluI GCNGC 5 cut(s) 55, 75, 97, 120, 211
HaeIII GGCC 1 cut(s) 213
HhaI GCGC 1 cut(s) 54
Hin6I GCGC 1 cut(s) 52
HinP1I GCGC 1 cut(s) 52
Hpy166II GTNNAC 1 cut(s) 6
Hpy188I TCNGA 1 cut(s) 178
Hpy8I GTNNAC 1 cut(s) 6
HpyCH4III ACNGT 1 cut(s) 143
HpyCH4V TGCA 5 cut(s) 6, 27, 99, 127, 148
HpyF10VI GCNNNNNNNGC 2 cut(s) 71, 119
HspAI GCGC 1 cut(s) 52
LmnI GCTCC 1 cut(s) 116
LpnPI CCDG 6 cut(s) 43, 63, 67, 75, 85, 99
Lsp1109I GCAGC 4 cut(s) 66, 83, 86, 106
LweI GCATC 2 cut(s) 14, 52
MaeI CTAG 1 cut(s) 223
MhlI GDGCHC 1 cut(s) 8
MluCI AATT 3 cut(s) 155, 172, 217
MnlI CCTC 1 cut(s) 97
MwoI GCNNNNNNNGC 2 cut(s) 71, 119
NsbI TGCGCA 1 cut(s) 53
PkrI GCNGC 5 cut(s) 56, 76, 98, 121, 212
PstI CTGCAG 1 cut(s) 101
PstNI CAGNNNCTG 1 cut(s) 119
SatI GCNGC 5 cut(s) 55, 75, 97, 120, 211
SduI GDGCHC 1 cut(s) 8
SetI ASST 2 cut(s) 121, 199
SfaNI GCATC 2 cut(s) 14, 52
SfcI CTRYAG 2 cut(s) 97, 198
Sse9I AATT 3 cut(s) 155, 172, 217
SsiI CCGC 1 cut(s) 210
SspMI CTAG 1 cut(s) 223
TaaI ACNGT 1 cut(s) 143
TasI AATT 3 cut(s) 155, 172, 217
TauI GCSGC 1 cut(s) 213
TscAI CASTG 2 cut(s) 34, 148
TseI GCWGC 4 cut(s) 54, 74, 96, 119
TspRI CASTG 2 cut(s) 34, 148
VneI GTGCAC 1 cut(s) 4
XapI RAATTY 2 cut(s) 155, 172
XspI CTAG 1 cut(s) 223
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.