Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0002822

Physical Location & Seq

Genomic Coordinates Reverse (-)

7807806 .. 7812506

Gene Structure 4701 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG075100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1341 bp

ATGCTTAGGATTTTGGCGAAGAGAGGAGCTTTAGGTTCGTGGAGGTCAGCGAGCGCAGTACAGATAACGAGGGATTACAGCCTCGGAGTGCTTCCCGATGGAGTTGATCGGAATTCCGAGGCTTTTTCTCGGAATTCTAAGGACATGGGTCTCTTAATCTCCGACCTCCAATCCCACATCCAAAAGGTTCTCGCTGGAGGAGGACCTGGAGCTGTGAAGAGAAACAAGAGCAGGAACAAGCTCCTCCCACGAGAACGCATTGATCGCTTGCTTGATCCTGGTGCTTCTTTCCTTGAGCTTTCTCAGCTTGCAGGGCATGAACTATATGAAGACACATTACCATCTGGTGGGATAATTACTGGAATTGGTCCTGTCCATGGGAGGCTCTGTATGTTTGTGGCTAATGATCCTACTGTGAAGGGTGGGACTTATTATCCCATCACTGTTAAGAAACACCTCAGGGCGCAAGAAATTGCTGCTCGATGCAAGTTACCATGTGTGTATCTTGTTGATAGCGGAGGGGCTTTTCTTCCCAAACAGGCGGAGGTGTTTCCTGACAAGGAGAATTTCGGTAGAATCTTCTACAATCAAGCTTTAATGTCAGCTGAAGGCATTCCTCAAATTGCGCTGGTATTGGGCTCTTGCACTGCTGGCGGTGCGTATATTCCTGCAATGGCTGATGAAAGTGTGATGGTTAAGGGAAATGGTACTATATTTCTGGCAGGACCCCCGCTTGTGAAGGCTGCCACTGGAGAAGAAGTATCGGCAGAGGATTTGGGGGGTGCTAGTGTGCATTGCAAGACTTCGGGAGTGTCAGATTATTTTGCTCAAGATGAACTCCATGGACTTACTCTTGGGAGGAATATTATTAAGAACTTGCACATGGCTGGGAAACAGGGTTTGAAAAGCGAATTGCGGAGCATAAGTTCCGAATATAAGGAACCATTATTTGATGTAAAGGAACTTCGTTCCATTGCACCAACAGATCATAAGCAACAGTTTGATATTCGTTCAGTTATTGCTCGCACTGTTGACGGAAGCGAATTTGATGAATTCAAGAAATTGTATGGCACTAGTCTTGTGACAGGTTTTGCTAGAATCTTCGGACAGCCTGTTGGAATTATTGGAAACAATGGGATATTATTTAATGAATCTGCTCTAAAAGGGGCCCACTTCATTGAATTATGTACTCAACGAAATATTCCTTTGGTCTTCCTTCAGAACATCACCGGATTTATGGTTGGCTCGAGATCTGAAGCAAATGGAATAGCAAAATCTGGAGCAAAAATGGTGATGGCAGTTTCTTGTGCCAAGGTTTGTTTGTTCTTGTTTCATGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006082 GO:0006520 GO:0006551 GO:0006552 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009056 GO:0009063 GO:0009081 GO:0009083 GO:0009987 GO:0016054 GO:0019752 GO:0031974 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046395 GO:0046872 GO:0046914 GO:0050897 GO:0070013 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606

KEGG Pathways

Metabolic & Signaling

ko00280 ko01100 map00280 map01100

Pfam Domains

Protein Families

Carboxyl_trans

Protein Analysis

446

Amino Acids

47.96

Weight (kDa)

8.88

Isoelectric Point (pI)

42.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Carboxyl_trans	PF01039	75 - 440	2.7e-129	Carboxyl transferase domain
ACCA	PF03255	141 - 233	7.5e-08	Acetyl co-enzyme A carboxylase carboxyltransferase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002822)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34030
fragaria_vesca	FvH4_2g05870 FvH4_2g05870 FvH4_2g05870 FvH4_2g05870 FvH4_2g05870 FvH4_2g05870
malus_domestica	MD05G1082300.v1.1
prunus_persica	Prupe.8G126800_v2.0.a1
pyrus_communis	pycom05g07710 pycom05g07720
rosa_chinensis	RchiOBHm_Chr6g0257681 RchiOBHm_Chr6g0257701
rosa_laevigata	RLG00000014716 RLG00000014717
rosa_multiflora	Rmu_sc0000916.1_g000002 Rmu_sc0006683.1_g000009 Rmu_sc0006683.1_g000013 Rmu_sc0006683.1_g000018 Rmu_sc0011315.1_g000001 Rmu_sc0011315.1_g000004 Rmu_sc0026590.1_g000002
rosa_roxburghii	Rroxscaffold_7G00208880 Rroxscaffold_7G00208890
rosa_rugosa	Rorug05G0568900 Rorug05G0569000 Rorug05G0569100 Rorug05G0569200 Rorug05G0569300
rosa_samantha	Rh6AG085700 Rh6AG086000 Rh6BG080000 Rh6BG080100 Rh6CG075000 Rh6CG075100 Rh6DG071900 Rh6DG072000
rosa_wichuraiana	Rw6G007690 Rw6G007700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	347
AciI	CCGC	5 cut(s)	516, 542, 654, 731, 916
AclWI	GGATC	2 cut(s)	269, 401
AcsI	RAATTY	5 cut(s)	112, 133, 565, 1043, 1052
AcuI	CTGAAG	3 cut(s)	627, 1202, 1275
AfaI	GTAC	3 cut(s)	60, 709, 1189
AfiI	CCNNNNNNNGG	2 cut(s)	347, 377
AgsI	TTSAA	3 cut(s)	904, 1057, 1181
AhlI	ACTAGT	1 cut(s)	1073
AjnI	CCWGG	2 cut(s)	205, 277
AloI	GAACNNNNNNTCC	2 cut(s)	910, 942
AluBI	AGCT	7 cut(s)	29, 212, 241, 298, 307, 593, 605
AluI	AGCT	7 cut(s)	29, 212, 241, 298, 307, 593, 605
Alw26I	GTCTC	1 cut(s)	155
AlwI	GGATC	2 cut(s)	269, 401
Ama87I	CYCGRG	1 cut(s)	1246
AoxI	GGCC	1 cut(s)	1167
ApaI	GGGCCC	1 cut(s)	1171
ApeKI	GCWGC	2 cut(s)	476, 743
ApoI	RAATTY	5 cut(s)	112, 133, 565, 1043, 1052
Asp700I	GAANNNNTTC	1 cut(s)	612
AspLEI	GCGC	3 cut(s)	56, 466, 628
AspS9I	GGNCC	5 cut(s)	203, 368, 725, 1167, 1168
AsuHPI	GGTGA	2 cut(s)	1219, 1303
AvaI	CYCGRG	1 cut(s)	1246
AvaII	GGWCC	3 cut(s)	203, 368, 725
AxyI	CCTNAGG	1 cut(s)	458
BaeGI	GKGCMC	1 cut(s)	1171
BanII	GRGCYC	2 cut(s)	641, 1171
BarI	GAAGNNNNNNTAC	4 cut(s)	321, 353, 948, 980
BauI	CACGAG	1 cut(s)	249
BbsI	GAAGAC	2 cut(s)	336, 1204
BbvI	GCAGC	2 cut(s)	463, 730
BccI	CCATC	5 cut(s)	92, 349, 446, 685, 1288
BciT130I	CCWGG	2 cut(s)	207, 279
BcoDI	GTCTC	1 cut(s)	155
BcuI	ACTAGT	1 cut(s)	1073
BfaI	CTAG	3 cut(s)	786, 1074, 1095
BglII	AGATCT	1 cut(s)	1250
BisI	GCNGC	2 cut(s)	477, 744
BlsI	GCNGC	2 cut(s)	478, 745
Bme1390I	CCNGG	2 cut(s)	207, 279
Bme18I	GGWCC	3 cut(s)	203, 368, 725
BmeT110I	CYCGRG	1 cut(s)	1246
BmgT120I	GGNCC	5 cut(s)	203, 368, 725, 1167, 1168
BmiI	GGNNCC	4 cut(s)	727, 942, 1168, 1169
BmrFI	CCNGG	2 cut(s)	207, 279
BmsI	GCATC	1 cut(s)	473
BoxI	GACNNNNGTC	1 cut(s)	147
BpiI	GAAGAC	2 cut(s)	336, 1204
BpmI	CTGGAG	4 cut(s)	216, 228, 771, 1299
Bpu10I	CCTNAGC	1 cut(s)	5
BpuEI	CTTGAG	2 cut(s)	314, 813
BsaI	GGTCTC	1 cut(s)	155
BsaJI	CCNNGG	5 cut(s)	82, 117, 376, 841, 1311
BsaWI	WCCGGW	1 cut(s)	1229
BsaXI	ACNNNNNCTCC	6 cut(s)	373, 403, 744, 774, 910, 940
Bsc4I	CCNNNNNNNGG	2 cut(s)	347, 377
Bse1I	ACTGG	2 cut(s)	364, 754
Bse21I	CCTNAGG	1 cut(s)	458
Bse3DI	GCAATG	3 cut(s)	678, 793, 972
BseBI	CCWGG	2 cut(s)	207, 279
BseDI	CCNNGG	5 cut(s)	82, 117, 376, 841, 1311
BseGI	GGATG	1 cut(s)	177
BseLI	CCNNNNNNNGG	2 cut(s)	347, 377
BseMI	GCAATG	3 cut(s)	678, 793, 972
BseMII	CTCAG	2 cut(s)	317, 472
BseNI	ACTGG	2 cut(s)	364, 754
BseRI	GAGGAG	3 cut(s)	39, 213, 233
BseSI	GKGCMC	1 cut(s)	1171
BseXI	GCAGC	2 cut(s)	463, 730
BseYI	CCCAGC	1 cut(s)	887
BshFI	GGCC	1 cut(s)	1169
BsiHKCI	CYCGRG	1 cut(s)	1246
BsiSI	CCGG	1 cut(s)	1230
BslFI	GGGAC	1 cut(s)	439
BslI	CCNNNNNNNGG	2 cut(s)	347, 377
BsmAI	GTCTC	1 cut(s)	155
BsmFI	GGGAC	1 cut(s)	439
BsmI	GAATGC	1 cut(s)	612
BsnI	GGCC	1 cut(s)	1169
Bso31I	GGTCTC	1 cut(s)	155
BsoBI	CYCGRG	1 cut(s)	1246
Bsp120I	GGGCCC	1 cut(s)	1167
Bsp1286I	GDGCHC	2 cut(s)	641, 1171
Bsp143I	GATC	6 cut(s)	106, 262, 274, 406, 985, 1250
Bsp19I	CCATGG	2 cut(s)	376, 841
BspACI	CCGC	5 cut(s)	516, 542, 654, 731, 916
BspANI	GGCC	1 cut(s)	1169
BspCNI	CTCAG	2 cut(s)	316, 471
BspLI	GGNNCC	4 cut(s)	727, 942, 1168, 1169
BspPI	GGATC	2 cut(s)	269, 401
BspTNI	GGTCTC	1 cut(s)	155
BsrDI	GCAATG	3 cut(s)	678, 793, 972
BsrI	ACTGG	2 cut(s)	364, 754
BssECI	CCNNGG	5 cut(s)	82, 117, 376, 841, 1311
BssMI	GATC	6 cut(s)	106, 262, 274, 406, 985, 1250
BssSI	CACGAG	1 cut(s)	249
BssT1I	CCWWGG	3 cut(s)	376, 841, 1311
Bst2BI	CACGAG	1 cut(s)	249
Bst2UI	CCWGG	2 cut(s)	207, 279
Bst4CI	ACNGT	4 cut(s)	415, 445, 999, 1030
Bst6I	CTCTTC	2 cut(s)	14, 212
BstC8I	GCNNGC	5 cut(s)	52, 269, 309, 652, 1024
BstDEI	CTNAG	4 cut(s)	5, 138, 303, 458
BstDSI	CCRYGG	2 cut(s)	376, 841
BstF5I	GGATG	1 cut(s)	177
BstHHI	GCGC	3 cut(s)	56, 466, 628
BstKTI	GATC	6 cut(s)	109, 265, 277, 409, 988, 1253
BstMAI	GTCTC	1 cut(s)	155
BstMBI	GATC	6 cut(s)	106, 262, 274, 406, 985, 1250
BstMWI	GCNNNNNNNGC	5 cut(s)	264, 304, 313, 651, 656
BstNI	CCWGG	2 cut(s)	207, 279
BstPAI	GACNNNNGTC	1 cut(s)	147
BstSCI	CCNGG	2 cut(s)	205, 277
BstSLI	GKGCMC	1 cut(s)	1171
BstV1I	GCAGC	2 cut(s)	463, 730
BstV2I	GAAGAC	2 cut(s)	336, 1204
BstX2I	RGATCY	1 cut(s)	1250
BstYI	RGATCY	1 cut(s)	1250
Bsu36I	CCTNAGG	1 cut(s)	458
BsuRI	GGCC	1 cut(s)	1169
BtgI	CCRYGG	2 cut(s)	376, 841
BtsCI	GGATG	1 cut(s)	177
BtsI	GCAGTG	1 cut(s)	645
BtsIMutI	CAGTG	4 cut(s)	441, 645, 747, 1026
Cac8I	GCNNGC	5 cut(s)	52, 269, 309, 652, 1024
CfoI	GCGC	3 cut(s)	56, 466, 628
Cfr13I	GGNCC	5 cut(s)	203, 368, 725, 1167, 1168
Csp6I	GTAC	3 cut(s)	59, 708, 1188
CviAII	CATG	7 cut(s)	145, 317, 377, 495, 842, 883, 1334
CviQI	GTAC	3 cut(s)	59, 708, 1188
DdeI	CTNAG	4 cut(s)	5, 138, 303, 458
DpnI	GATC	6 cut(s)	108, 264, 276, 408, 987, 1252
DpnII	GATC	6 cut(s)	106, 262, 274, 406, 985, 1250
Eam1104I	CTCTTC	2 cut(s)	14, 212
EarI	CTCTTC	2 cut(s)	14, 212
EciI	GGCGGA	1 cut(s)	557
Eco130I	CCWWGG	3 cut(s)	376, 841, 1311
Eco24I	GRGCYC	2 cut(s)	641, 1171
Eco31I	GGTCTC	1 cut(s)	155
Eco47I	GGWCC	3 cut(s)	203, 368, 725
Eco57I	CTGAAG	3 cut(s)	627, 1202, 1275
Eco81I	CCTNAGG	1 cut(s)	458
Eco88I	CYCGRG	1 cut(s)	1246
EcoO109I	RGGNCCY	3 cut(s)	203, 725, 1167
EcoRI	GAATTC	3 cut(s)	112, 133, 1052
EcoRII	CCWGG	2 cut(s)	205, 277
EcoT14I	CCWWGG	3 cut(s)	376, 841, 1311
EcoT38I	GRGCYC	2 cut(s)	641, 1171
ErhI	CCWWGG	3 cut(s)	376, 841, 1311
FaeI	CATG	7 cut(s)	148, 320, 380, 498, 845, 886, 1337
FaqI	GGGAC	1 cut(s)	439
FatI	CATG	7 cut(s)	144, 316, 376, 494, 841, 882, 1333
FauI	CCCGC	1 cut(s)	738
Fnu4HI	GCNGC	2 cut(s)	477, 744
FokI	GGATG	1 cut(s)	164
FriOI	GRGCYC	2 cut(s)	641, 1171
Fsp4HI	GCNGC	2 cut(s)	477, 744
FspBI	CTAG	3 cut(s)	786, 1074, 1095
GlaI	GCGC	3 cut(s)	55, 465, 627
GluI	GCNGC	2 cut(s)	477, 744
GsaI	CCCAGC	1 cut(s)	891
GsuI	CTGGAG	4 cut(s)	216, 228, 771, 1299
HaeIII	GGCC	1 cut(s)	1169
HapII	CCGG	1 cut(s)	1230
HhaI	GCGC	3 cut(s)	56, 466, 628
Hin1II	CATG	7 cut(s)	148, 320, 380, 498, 845, 886, 1337
Hin6I	GCGC	3 cut(s)	54, 464, 626
HinP1I	GCGC	3 cut(s)	54, 464, 626
HincII	GTYRAC	1 cut(s)	1033
HindII	GTYRAC	1 cut(s)	1033
HindIII	AAGCTT	1 cut(s)	591
HinfI	GANTC	3 cut(s)	576, 1098, 1151
HpaII	CCGG	1 cut(s)	1230
HphI	GGTGA	2 cut(s)	1219, 1303
Hpy166II	GTNNAC	1 cut(s)	1033
Hpy188III	TCNNGA	7 cut(s)	95, 554, 807, 830, 1057, 1248, 1278
Hpy8I	GTNNAC	1 cut(s)	1033
HpyAV	CCTTC	4 cut(s)	412, 602, 733, 1226
HpyCH4III	ACNGT	4 cut(s)	415, 445, 999, 1030
HpyCH4V	TGCA	8 cut(s)	311, 486, 645, 671, 793, 798, 880, 977
HpyF10VI	GCNNNNNNNGC	5 cut(s)	264, 304, 313, 651, 656
HpyF3I	CTNAG	4 cut(s)	5, 138, 303, 458
Hsp92II	CATG	7 cut(s)	148, 320, 380, 498, 845, 886, 1337
HspAI	GCGC	3 cut(s)	54, 464, 626
Kzo9I	GATC	6 cut(s)	106, 262, 274, 406, 985, 1250
LmnI	GCTCC	5 cut(s)	26, 209, 246, 918, 1280
Lsp1109I	GCAGC	2 cut(s)	463, 730
LweI	GCATC	1 cut(s)	473
MaeI	CTAG	3 cut(s)	786, 1074, 1095
MaeIII	GTNAC	2 cut(s)	489, 1081
MalI	GATC	6 cut(s)	108, 264, 276, 408, 987, 1252
MboI	GATC	6 cut(s)	106, 262, 274, 406, 985, 1250
MboII	GAAGA	8 cut(s)	31, 229, 341, 521, 571, 767, 1093, 1204
MflI	RGATCY	1 cut(s)	1250
MhlI	GDGCHC	2 cut(s)	641, 1171
MmeI	TCCRAC	2 cut(s)	186, 1096
MroXI	GAANNNNTTC	1 cut(s)	612
MseI	TTAA	7 cut(s)	155, 447, 596, 696, 870, 1146, 1339
MspA1I	CMGCKG	1 cut(s)	605
MspI	CCGG	1 cut(s)	1230
MspR9I	CCNGG	2 cut(s)	207, 279
Mva1269I	GAATGC	1 cut(s)	612
MvaI	CCWGG	2 cut(s)	207, 279
MwoI	GCNNNNNNNGC	5 cut(s)	264, 304, 313, 651, 656
NcoI	CCATGG	2 cut(s)	376, 841
NdeII	GATC	6 cut(s)	106, 262, 274, 406, 985, 1250
NlaIII	CATG	7 cut(s)	148, 320, 380, 498, 845, 886, 1337
NlaIV	GGNNCC	4 cut(s)	727, 942, 1168, 1169
NmuCI	GTSAC	1 cut(s)	1081
PaeR7I	CTCGAG	1 cut(s)	1246
PctI	GAATGC	1 cut(s)	612
PdmI	GAANNNNTTC	1 cut(s)	612
PfeI	GAWTC	3 cut(s)	576, 1098, 1151
PflMI	CCANNNNNTGG	1 cut(s)	347
PkrI	GCNGC	2 cut(s)	478, 745
PpuMI	RGGWCCY	2 cut(s)	203, 725
PshAI	GACNNNNGTC	1 cut(s)	147
Psp5II	RGGWCCY	2 cut(s)	203, 725
Psp6I	CCWGG	2 cut(s)	205, 277
PspFI	CCCAGC	1 cut(s)	887
PspGI	CCWGG	2 cut(s)	205, 277
PspN4I	GGNNCC	4 cut(s)	727, 942, 1168, 1169
PspOMI	GGGCCC	1 cut(s)	1167
PspPI	GGNCC	5 cut(s)	203, 368, 725, 1167, 1168
PspPPI	RGGWCCY	2 cut(s)	203, 725
PsuI	RGATCY	1 cut(s)	1250
PvuII	CAGCTG	1 cut(s)	605
RsaI	GTAC	3 cut(s)	60, 709, 1189
RsaNI	GTAC	3 cut(s)	59, 708, 1188
SaqAI	TTAA	7 cut(s)	155, 447, 596, 696, 870, 1146, 1339
SatI	GCNGC	2 cut(s)	477, 744
Sau3AI	GATC	6 cut(s)	106, 262, 274, 406, 985, 1250
Sau96I	GGNCC	5 cut(s)	203, 368, 725, 1167, 1168
ScrFI	CCNGG	2 cut(s)	207, 279
SduI	GDGCHC	2 cut(s)	641, 1171
SfaNI	GCATC	1 cut(s)	473
Sfr274I	CTCGAG	1 cut(s)	1246
SinI	GGWCC	3 cut(s)	203, 368, 725
SlaI	CTCGAG	1 cut(s)	1246
SmlI	CTYRAG	3 cut(s)	293, 828, 1246
SmoI	CTYRAG	3 cut(s)	293, 828, 1246
SpeI	ACTAGT	1 cut(s)	1073
SsiI	CCGC	5 cut(s)	516, 542, 654, 731, 916
SspI	AATATT	2 cut(s)	865, 1201
SspMI	CTAG	3 cut(s)	786, 1074, 1095
StyD4I	CCNGG	2 cut(s)	205, 277
StyI	CCWWGG	3 cut(s)	376, 841, 1311
TaaI	ACNGT	4 cut(s)	415, 445, 999, 1030
TaqI	TCGA	2 cut(s)	481, 1247
TatI	WGTACW	2 cut(s)	58, 1187
TfiI	GAWTC	3 cut(s)	576, 1098, 1151
Tru1I	TTAA	7 cut(s)	155, 447, 596, 696, 870, 1146, 1339
Tru9I	TTAA	7 cut(s)	155, 447, 596, 696, 870, 1146, 1339
TscAI	CASTG	4 cut(s)	448, 652, 754, 1033
TseFI	GTSAC	1 cut(s)	1081
TseI	GCWGC	2 cut(s)	476, 743
Tsp45I	GTSAC	1 cut(s)	1081
TspDTI	ATGAA	8 cut(s)	333, 342, 696, 849, 1065, 1164, 1165, 1322
TspGWI	ACGGA	1 cut(s)	1050
TspRI	CASTG	4 cut(s)	448, 652, 754, 1033
Van91I	CCANNNNNTGG	1 cut(s)	347
VpaK11BI	GGWCC	3 cut(s)	203, 368, 725
XapI	RAATTY	5 cut(s)	112, 133, 565, 1043, 1052
XhoI	CTCGAG	1 cut(s)	1246
XmnI	GAANNNNTTC	1 cut(s)	612
XspI	CTAG	3 cut(s)	786, 1074, 1095

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.