Rmu_sc0000916.1_g000002

carboxylase beta chain

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000916.1
Physical Location & Seq
Reverse (-)
16447 .. 20094
3648 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000916.1_g000002.1.cds

Sequence Viewer

Length: 1521 bp
atggctgatgaaagtgtgatggttaagggaaatggtactatatttctggcaggacccccgcttgtgaaggctgccaccggagaagttgtatcggcagaggatttggggggtgctagtgtgcattgcaagacttcgggagtgtcagattattttgctcaagatgaactccatggacttactcttgggaggaatattattaagaacttgcacatggctgggaaacagggtttgaaaagcgaattgcggagcataagttccgaatataaggaaccgttatttgatgtaaaggaacttcgttccattgcaccaacagaccataagcaacagtttgatattcgttcagttattgctcgcattgttgacggaagcgaatttgatgaattcaagaaattgtatggcactactcttgtgacaggttttgctagaatcttcggacagcctgttggaattattggaaacaatgggatattatttaatgaatctgctctaaaaggtgcccacttcattgaattatgtactcaacgaaatattactttgatcttccttcagaacatcaccggatttatggttggctcgagatctgaagcaaatggaatagcaaaatctggagcaaaaatggtgatggcagtttcttgtgccaaggtccccaaagttactattataattggtggaagctttggcgctggcaattatgcaatgtgcggtcgtgcttatagtcccgatttcatgttcctttggccgaatgccaaaatatctgtgatgggtggtgctcaggccgctggtgtccttgctcagatagaaagaagcaacaagaaaaaacaaggaattgagtgggacaaggaggaagaggaaaagttcaaggcaaaggtagttgaggcatatgagaaagaaggaaactcttattactctacagcaaggctctgggatgatgggattattgatccagctgacaccagaaaagtcataggtctctccatcgctgcctctatgaaccgtgacccagaagaaaccaagttcgtgctcgtccctgtgcaacaattcaaaatcctcgcctggaactgcaaaggacttaacaatatagaaacgcaggatgctcttgttgatattgttcgatgtcaaaaccctagtttggtgtttctctctgaaaccctagcaacgtcggatttgctgacgacagtgcgtcggctgatgggcttcgatggagtcgtctgtgctcctaaagatgatgattgccgtggactggcattattttggcggagtgatatcccagttagactcaggaactactctgcgaatcacatcgacgtagaggttggggctgtagggtctgaaggtgttttcaggtttacaggaatctatggagtagctactacagagaaccgtaccatcacttgggatcttctccgactattagcctctcaacttcatattccatggttggtagctggagatttcaatgaagttctctgccatcaatggcggacgcacgtagggacgagtgggggcagctgcccctactga

Protein Analysis

506

Amino Acids

55.32

Weight (kDa)

6.35

Isoelectric Point (pI)

39.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 662
AccB1I GGYRCC 1 cut(s) 494
AccB7I CCANNNNNTGG 1 cut(s) 1392
AciI CCGC 6 cut(s) 59, 244, 702, 777, 1255, 1480
AclWI GGATC 2 cut(s) 935, 1404
AcoI YGGCCR 1 cut(s) 737
AcsI RAATTY 2 cut(s) 371, 380
AcuI CTGAAG 3 cut(s) 530, 603, 1350
AfaI GTAC 3 cut(s) 37, 517, 1384
AfiI CCNNNNNNNGG 3 cut(s) 1129, 1240, 1392
AgsI TTSAA 6 cut(s) 232, 385, 509, 859, 1042, 1456
AhdI GACNNNNNGTC 1 cut(s) 1179
AjnI CCWGG 1 cut(s) 1052
AloI GAACNNNNNNTCC 2 cut(s) 238, 270
AluBI AGCT 5 cut(s) 675, 947, 1367, 1445, 1509
AluI AGCT 5 cut(s) 675, 947, 1367, 1445, 1509
Alw21I GWGCWC 3 cut(s) 772, 1023, 1216
Alw26I GTCTC 1 cut(s) 974
AlwI GGATC 2 cut(s) 935, 1404
Ama87I CYCGRG 1 cut(s) 574
AoxI GGCC 2 cut(s) 737, 774
ApeKI GCWGC 4 cut(s) 71, 980, 1506, 1509
ApoI RAATTY 2 cut(s) 371, 380
AspLEI GCGC 1 cut(s) 683
AspS9I GGNCC 2 cut(s) 53, 643
AsuHPI GGTGA 2 cut(s) 547, 631
AvaI CYCGRG 1 cut(s) 574
AvaII GGWCC 2 cut(s) 53, 643
BaeGI GKGCMC 1 cut(s) 499
BanI GGYRCC 1 cut(s) 494
BarI GAAGNNNNNNTAC 2 cut(s) 276, 308
Bbv12I GWGCWC 3 cut(s) 772, 1023, 1216
BbvI GCAGC 3 cut(s) 58, 967, 1496
BccI CCATC 9 cut(s) 13, 616, 754, 923, 983, 1183, 1193, 1394, 1479
BceAI ACGGC 1 cut(s) 1218
BciT130I CCWGG 1 cut(s) 1054
BcoDI GTCTC 1 cut(s) 974
BfaI CTAG 4 cut(s) 114, 423, 1125, 1151
BfmI CTRYAG 3 cut(s) 909, 1320, 1371
BfoI RGCGCY 1 cut(s) 684
BglII AGATCT 1 cut(s) 578
BisI GCNGC 5 cut(s) 72, 777, 981, 1507, 1510
BlsI GCNGC 5 cut(s) 73, 778, 982, 1508, 1511
Bme1390I CCNGG 1 cut(s) 1054
Bme18I GGWCC 2 cut(s) 53, 643
BmeRI GACNNNNNGTC 1 cut(s) 1179
BmeT110I CYCGRG 1 cut(s) 574
BmgT120I GGNCC 2 cut(s) 53, 643
BmiI GGNNCC 4 cut(s) 55, 270, 496, 645
BmrFI CCNGG 1 cut(s) 1054
BmrI ACTGGG 1 cut(s) 1262
BmsI GCATC 1 cut(s) 1081
BmuI ACTGGG 1 cut(s) 1262
BpmI CTGGAG 2 cut(s) 627, 1467
Bpu10I CCTNAGC 1 cut(s) 771
BpuEI CTTGAG 1 cut(s) 141
BsaAI YACGTR 1 cut(s) 1489
BsaI GGTCTC 1 cut(s) 974
BsaJI CCNNGG 4 cut(s) 169, 639, 1234, 1433
BsaWI WCCGGW 2 cut(s) 77, 557
BsaXI ACNNNNNCTCC 4 cut(s) 72, 102, 238, 268
Bsc4I CCNNNNNNNGG 3 cut(s) 1129, 1240, 1392
Bse1I ACTGG 2 cut(s) 1245, 1268
Bse3DI GCAATG 3 cut(s) 121, 300, 702
BseBI CCWGG 1 cut(s) 1054
BseDI CCNNGG 4 cut(s) 169, 639, 1234, 1433
BseGI GGATG 2 cut(s) 931, 1096
BseLI CCNNNNNNNGG 3 cut(s) 1129, 1240, 1392
BseMI GCAATG 3 cut(s) 121, 300, 702
BseMII CTCAG 3 cut(s) 785, 806, 1291
BseNI ACTGG 2 cut(s) 1245, 1268
BseSI GKGCMC 1 cut(s) 499
BseXI GCAGC 3 cut(s) 58, 967, 1496
BseYI CCCAGC 1 cut(s) 215
Bsh1285I CGRYCG 1 cut(s) 706
BshFI GGCC 2 cut(s) 739, 776
BshNI GGYRCC 1 cut(s) 494
BsiEI CGRYCG 1 cut(s) 706
BsiHKAI GWGCWC 3 cut(s) 772, 1023, 1216
BsiHKCI CYCGRG 1 cut(s) 574
BsiSI CCGG 2 cut(s) 78, 558
BslFI GGGAC 5 cut(s) 629, 702, 848, 1010, 1507
BslI CCNNNNNNNGG 3 cut(s) 1129, 1240, 1392
BsmAI GTCTC 1 cut(s) 974
BsmFI GGGAC 5 cut(s) 629, 702, 848, 1010, 1507
BsmI GAATGC 1 cut(s) 748
BsnI GGCC 2 cut(s) 739, 776
Bso31I GGTCTC 1 cut(s) 974
BsoBI CYCGRG 1 cut(s) 574
Bsp1286I GDGCHC 4 cut(s) 499, 772, 1023, 1216
Bsp143I GATC 4 cut(s) 537, 578, 940, 1396
Bsp19I CCATGG 2 cut(s) 169, 1433
BspACI CCGC 6 cut(s) 59, 244, 702, 777, 1255, 1480
BspANI GGCC 2 cut(s) 739, 776
BspCNI CTCAG 3 cut(s) 784, 805, 1290
BspLI GGNNCC 4 cut(s) 55, 270, 496, 645
BspPI GGATC 2 cut(s) 935, 1404
BspT107I GGYRCC 1 cut(s) 494
BspTNI GGTCTC 1 cut(s) 974
BsrDI GCAATG 3 cut(s) 121, 300, 702
BsrI ACTGG 2 cut(s) 1245, 1268
BssECI CCNNGG 4 cut(s) 169, 639, 1234, 1433
BssMI GATC 4 cut(s) 537, 578, 940, 1396
BssT1I CCWWGG 3 cut(s) 169, 639, 1433
Bst2UI CCWGG 1 cut(s) 1054
Bst4CI ACNGT 5 cut(s) 273, 327, 995, 1177, 1382
Bst6I CTCTTC 1 cut(s) 840
BstBAI YACGTR 1 cut(s) 1489
BstC8I GCNNGC 2 cut(s) 352, 685
BstDEI CTNAG 3 cut(s) 771, 792, 1277
BstDSI CCRYGG 3 cut(s) 169, 1234, 1433
BstF5I GGATG 2 cut(s) 931, 1096
BstH2I RGCGCY 1 cut(s) 684
BstHHI GCGC 1 cut(s) 683
BstKTI GATC 4 cut(s) 540, 581, 943, 1399
BstMAI GTCTC 1 cut(s) 974
BstMBI GATC 4 cut(s) 537, 578, 940, 1396
BstMCI CGRYCG 1 cut(s) 706
BstMWI GCNNNNNNNGC 1 cut(s) 776
BstNI CCWGG 1 cut(s) 1054
BstSCI CCNGG 1 cut(s) 1052
BstSFI CTRYAG 3 cut(s) 909, 1320, 1371
BstSLI GKGCMC 1 cut(s) 499
BstV1I GCAGC 3 cut(s) 58, 967, 1496
BstX2I RGATCY 2 cut(s) 578, 1396
BstYI RGATCY 2 cut(s) 578, 1396
BsuRI GGCC 2 cut(s) 739, 776
BtgI CCRYGG 3 cut(s) 169, 1234, 1433
BtgZI GCGATG 1 cut(s) 961
BtsCI GGATG 2 cut(s) 931, 1096
BtsIMutI CAGTG 1 cut(s) 1182
Cac8I GCNNGC 2 cut(s) 352, 685
CfoI GCGC 1 cut(s) 683
Cfr13I GGNCC 2 cut(s) 53, 643
CseI GACGC 2 cut(s) 1169, 1492
Csp6I GTAC 3 cut(s) 36, 516, 1383
CviAII CATG 4 cut(s) 170, 211, 727, 1434
CviQI GTAC 3 cut(s) 36, 516, 1383
DdeI CTNAG 3 cut(s) 771, 792, 1277
DpnI GATC 4 cut(s) 539, 580, 942, 1398
DpnII GATC 4 cut(s) 537, 578, 940, 1396
DriI GACNNNNNGTC 1 cut(s) 1179
EaeI YGGCCR 1 cut(s) 737
Eam1104I CTCTTC 1 cut(s) 840
Eam1105I GACNNNNNGTC 1 cut(s) 1179
EarI CTCTTC 1 cut(s) 840
EciI GGCGGA 2 cut(s) 1270, 1495
Eco130I CCWWGG 3 cut(s) 169, 639, 1433
Eco31I GGTCTC 1 cut(s) 974
Eco32I GATATC 1 cut(s) 1264
Eco47I GGWCC 2 cut(s) 53, 643
Eco57I CTGAAG 3 cut(s) 530, 603, 1350
Eco88I CYCGRG 1 cut(s) 574
EcoO109I RGGNCCY 2 cut(s) 53, 643
EcoRI GAATTC 1 cut(s) 380
EcoRII CCWGG 1 cut(s) 1052
EcoRV GATATC 1 cut(s) 1264
EcoT14I CCWWGG 3 cut(s) 169, 639, 1433
ErhI CCWWGG 3 cut(s) 169, 639, 1433
FaeI CATG 4 cut(s) 173, 214, 730, 1437
FaqI GGGAC 5 cut(s) 629, 702, 848, 1010, 1507
FatI CATG 4 cut(s) 169, 210, 726, 1433
FauI CCCGC 1 cut(s) 66
FauNDI CATATG 1 cut(s) 880
Fnu4HI GCNGC 5 cut(s) 72, 777, 981, 1507, 1510
FokI GGATG 2 cut(s) 938, 1103
Fsp4HI GCNGC 5 cut(s) 72, 777, 981, 1507, 1510
FspBI CTAG 4 cut(s) 114, 423, 1125, 1151
GlaI GCGC 1 cut(s) 682
GluI GCNGC 5 cut(s) 72, 777, 981, 1507, 1510
GsaI CCCAGC 1 cut(s) 219
GsuI CTGGAG 2 cut(s) 627, 1467
HaeII RGCGCY 1 cut(s) 684
HaeIII GGCC 2 cut(s) 739, 776
HapII CCGG 2 cut(s) 78, 558
HgaI GACGC 2 cut(s) 1169, 1492
HhaI GCGC 1 cut(s) 683
Hin1II CATG 4 cut(s) 173, 214, 730, 1437
Hin6I GCGC 1 cut(s) 681
HinP1I GCGC 1 cut(s) 681
HincII GTYRAC 1 cut(s) 361
HindII GTYRAC 1 cut(s) 361
HindIII AAGCTT 1 cut(s) 673
HinfI GANTC 6 cut(s) 426, 479, 1203, 1275, 1294, 1353
HpaII CCGG 2 cut(s) 78, 558
HphI GGTGA 2 cut(s) 547, 631
Hpy166II GTNNAC 3 cut(s) 361, 1238, 1347
Hpy188III TCNNGA 7 cut(s) 135, 158, 385, 576, 606, 719, 1279
Hpy8I GTNNAC 3 cut(s) 361, 1238, 1347
Hpy99I CGWCG 3 cut(s) 1162, 1185, 1307
HpyAV CCTTC 4 cut(s) 61, 554, 884, 1325
HpyCH4III ACNGT 5 cut(s) 273, 327, 995, 1177, 1382
HpyCH4IV ACGT 3 cut(s) 1157, 1305, 1488
HpyCH4V TGCA 7 cut(s) 121, 126, 208, 305, 695, 1033, 1062
HpyF10VI GCNNNNNNNGC 1 cut(s) 776
HpyF3I CTNAG 3 cut(s) 771, 792, 1277
HpySE526I ACGT 3 cut(s) 1157, 1305, 1488
Hsp92II CATG 4 cut(s) 173, 214, 730, 1437
HspAI GCGC 1 cut(s) 681
Kzo9I GATC 4 cut(s) 537, 578, 940, 1396
LmnI GCTCC 3 cut(s) 246, 608, 1219
Lsp1109I GCAGC 3 cut(s) 58, 967, 1496
LweI GCATC 1 cut(s) 1081
MaeI CTAG 4 cut(s) 114, 423, 1125, 1151
MaeII ACGT 3 cut(s) 1157, 1305, 1488
MaeIII GTNAC 3 cut(s) 409, 652, 995
MalI GATC 4 cut(s) 539, 580, 942, 1398
MboI GATC 4 cut(s) 537, 578, 940, 1396
MboII GAAGA 5 cut(s) 421, 532, 857, 1016, 1391
MflI RGATCY 2 cut(s) 578, 1396
MhlI GDGCHC 4 cut(s) 499, 772, 1023, 1216
MlyI GAGTC 2 cut(s) 1212, 1269
MmeI TCCRAC 3 cut(s) 424, 1140, 1429
MnlI CCTC 9 cut(s) 91, 180, 835, 841, 868, 994, 1058, 1303, 1426
MseI TTAA 4 cut(s) 24, 198, 474, 1071
MspA1I CMGCKG 3 cut(s) 779, 947, 1509
MspI CCGG 2 cut(s) 78, 558
MspR9I CCNGG 1 cut(s) 1054
Mva1269I GAATGC 1 cut(s) 748
MvaI CCWGG 1 cut(s) 1054
MwoI GCNNNNNNNGC 1 cut(s) 776
NcoI CCATGG 2 cut(s) 169, 1433
NdeI CATATG 1 cut(s) 880
NdeII GATC 4 cut(s) 537, 578, 940, 1396
NlaIII CATG 4 cut(s) 173, 214, 730, 1437
NlaIV GGNNCC 4 cut(s) 55, 270, 496, 645
NmuCI GTSAC 2 cut(s) 409, 995
PaeR7I CTCGAG 1 cut(s) 574
PcsI WCGNNNNNNNCGW 1 cut(s) 1203
PctI GAATGC 1 cut(s) 748
PfeI GAWTC 4 cut(s) 426, 479, 1294, 1353
PflMI CCANNNNNTGG 1 cut(s) 1392
PkrI GCNGC 5 cut(s) 73, 778, 982, 1508, 1511
PleI GAGTC 2 cut(s) 1211, 1269
PpsI GAGTC 2 cut(s) 1211, 1269
Ppu21I YACGTR 1 cut(s) 1489
PpuMI RGGWCCY 2 cut(s) 53, 643
PsiI TTATAA 1 cut(s) 662
Psp5II RGGWCCY 2 cut(s) 53, 643
Psp6I CCWGG 1 cut(s) 1052
PspFI CCCAGC 1 cut(s) 215
PspGI CCWGG 1 cut(s) 1052
PspN4I GGNNCC 4 cut(s) 55, 270, 496, 645
PspPI GGNCC 2 cut(s) 53, 643
PspPPI RGGWCCY 2 cut(s) 53, 643
PsuI RGATCY 2 cut(s) 578, 1396
PvuII CAGCTG 2 cut(s) 947, 1509
RsaI GTAC 3 cut(s) 37, 517, 1384
RsaNI GTAC 3 cut(s) 36, 516, 1383
SaqAI TTAA 4 cut(s) 24, 198, 474, 1071
SatI GCNGC 5 cut(s) 72, 777, 981, 1507, 1510
Sau3AI GATC 4 cut(s) 537, 578, 940, 1396
Sau96I GGNCC 2 cut(s) 53, 643
SchI GAGTC 2 cut(s) 1212, 1269
ScrFI CCNGG 1 cut(s) 1054
SduI GDGCHC 4 cut(s) 499, 772, 1023, 1216
SfaNI GCATC 1 cut(s) 1081
SfcI CTRYAG 3 cut(s) 909, 1320, 1371
Sfr274I CTCGAG 1 cut(s) 574
SinI GGWCC 2 cut(s) 53, 643
SlaI CTCGAG 1 cut(s) 574
SmlI CTYRAG 2 cut(s) 156, 574
SmoI CTYRAG 2 cut(s) 156, 574
SsiI CCGC 6 cut(s) 59, 244, 702, 777, 1255, 1480
SspI AATATT 2 cut(s) 193, 529
SspMI CTAG 4 cut(s) 114, 423, 1125, 1151
StyD4I CCNGG 1 cut(s) 1052
StyI CCWWGG 3 cut(s) 169, 639, 1433
TaaI ACNGT 5 cut(s) 273, 327, 995, 1177, 1382
TaiI ACGT 3 cut(s) 1160, 1308, 1491
TaqI TCGA 4 cut(s) 575, 1111, 1197, 1302
TatI WGTACW 1 cut(s) 515
TauI GCSGC 1 cut(s) 779
TfiI GAWTC 4 cut(s) 426, 479, 1294, 1353
Tru1I TTAA 4 cut(s) 24, 198, 474, 1071
Tru9I TTAA 4 cut(s) 24, 198, 474, 1071
TscAI CASTG 1 cut(s) 1182
TseFI GTSAC 2 cut(s) 409, 995
TseI GCWGC 4 cut(s) 71, 980, 1506, 1509
Tsp45I GTSAC 2 cut(s) 409, 995
TspDTI ATGAA 9 cut(s) 24, 177, 393, 492, 493, 715, 1004, 1415, 1473
TspGWI ACGGA 1 cut(s) 378
TspRI CASTG 1 cut(s) 1182
Van91I CCANNNNNTGG 1 cut(s) 1392
VpaK11BI GGWCC 2 cut(s) 53, 643
XapI RAATTY 2 cut(s) 371, 380
XhoI CTCGAG 1 cut(s) 574
XspI CTAG 4 cut(s) 114, 423, 1125, 1151
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.