Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0015717

Physical Location & Seq

Genomic Coordinates Forward (+)

11600930 .. 11601481

Gene Structure 552 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g08830.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGGTATCATCCTTCTCGAATCCTGGTTTCCTTCCTGTGCACACCCACCCACCTACGTTTTCTGCAATGGTTGCTGCGAATAATGATTCGCTTCGCGAAACCTTGGATGCTCTATTTGCACCCTTCCTTGCTATGATCTGCCGTGCCCGTAAGTTGGCTCTCAGCAAGCTAGACTCCACTTCAACCCCTATGTTCGCTATCAGTGATGAGGGATTTTCTGATCCAGCCCTGATGATTTTTGACGACACTGAATCAATCAATCTTAGTTATCTCGGACTTCAAGGAGACGACAATCCGCCGAGACTTCTATCGCCAATCGAAGTCCATTTTGTTCCGCCATTATTTTCGTCATCATCATTGTTGCGCGAAATCGAAGCTCCATCTGTCAAGCCACAGTCGAACTCGAACGCTTCAATGGGAGCCCACTCCAACAATAGCAAACCATTTTTGAGCAACCAGGAAGCTCCAACAAGTGTGCAAGGTCTGGGTTTTACTCCAATCCCGATGTCTGCTATCAATGCTACGAGCGACGAGGAAGGCAGCCCACCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000050 GO:0000053 GO:0003674 GO:0003824 GO:0004055 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006525 GO:0006526 GO:0006575 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016874 GO:0016879 GO:0019627 GO:0019752 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0071704 GO:0071941 GO:0072350 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00220 ko00250 ko01100 ko01110 ko01130 ko01230 ko05418 map00220 map00250 map01100 map01110 map01130 map01230 map05418

Pfam Domains

Protein Families

Arginosuc_synth

Protein Analysis

184

Amino Acids

19.52

Weight (kDa)

4.58

Isoelectric Point (pI)

50.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015717)

Species	Orthologous Gene IDs
pyrus_communis	pycom01g04860 pycom05g02320 pycom05g08830 pycom07g01190 pycom08g13400 pycom09g17550 pycom09g18320 pycom12494g00040 pycom13g01880 pycom13g01890 pycom13g25640 pycom14g04790 pycom15g23500 pycom15g30850 pycom15g32350 pycom17g14110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	96, 366
AciI	CCGC	2 cut(s)	296, 335
AclWI	GGATC	1 cut(s)	215
AfiI	CCNNNNNNNGG	1 cut(s)	154
AgsI	TTSAA	3 cut(s)	183, 281, 414
AjnI	CCWGG	2 cut(s)	22, 456
AluBI	AGCT	3 cut(s)	169, 377, 464
AluI	AGCT	3 cut(s)	169, 377, 464
Alw21I	GWGCWC	1 cut(s)	42
Alw26I	GTCTC	2 cut(s)	279, 295
Alw44I	GTGCAC	1 cut(s)	38
AlwI	GGATC	1 cut(s)	215
ApaLI	GTGCAC	1 cut(s)	38
ApeKI	GCWGC	2 cut(s)	74, 540
AspLEI	GCGC	1 cut(s)	366
BaeGI	GKGCMC	2 cut(s)	42, 148
BanII	GRGCYC	1 cut(s)	424
Bbv12I	GWGCWC	1 cut(s)	42
BbvI	GCAGC	1 cut(s)	61
BccI	CCATC	1 cut(s)	388
BceAI	ACGGC	1 cut(s)	126
BciT130I	CCWGG	2 cut(s)	24, 458
BcoDI	GTCTC	2 cut(s)	279, 295
BfaI	CTAG	1 cut(s)	170
BisI	GCNGC	2 cut(s)	75, 541
BlsI	GCNGC	2 cut(s)	76, 542
Bme1390I	CCNGG	2 cut(s)	24, 458
BmiI	GGNNCC	1 cut(s)	421
BmrFI	CCNGG	2 cut(s)	24, 458
BmsI	GCATC	1 cut(s)	97
BsaJI	CCNNGG	1 cut(s)	102
Bsc4I	CCNNNNNNNGG	1 cut(s)	154
Bse3DI	GCAATG	1 cut(s)	72
BseBI	CCWGG	2 cut(s)	24, 458
BseDI	CCNNGG	1 cut(s)	102
BseGI	GGATG	2 cut(s)	8, 112
BseLI	CCNNNNNNNGG	1 cut(s)	154
BseMI	GCAATG	1 cut(s)	72
BseMII	CTCAG	1 cut(s)	175
BseSI	GKGCMC	2 cut(s)	42, 148
BseXI	GCAGC	1 cut(s)	61
Bsh1236I	CGCG	2 cut(s)	96, 366
BsiHKAI	GWGCWC	1 cut(s)	42
BslI	CCNNNNNNNGG	1 cut(s)	154
BsmAI	GTCTC	2 cut(s)	279, 295
BsmBI	CGTCTC	1 cut(s)	279
Bsp1286I	GDGCHC	3 cut(s)	42, 148, 424
Bsp143I	GATC	2 cut(s)	135, 220
Bsp68I	TCGCGA	1 cut(s)	96
BspACI	CCGC	2 cut(s)	296, 335
BspCNI	CTCAG	1 cut(s)	174
BspFNI	CGCG	2 cut(s)	96, 366
BspLI	GGNNCC	1 cut(s)	421
BspPI	GGATC	1 cut(s)	215
BsrDI	GCAATG	1 cut(s)	72
BssECI	CCNNGG	1 cut(s)	102
BssMI	GATC	2 cut(s)	135, 220
BssT1I	CCWWGG	1 cut(s)	102
Bst2UI	CCWGG	2 cut(s)	24, 458
Bst4CI	ACNGT	2 cut(s)	396, 549
BstAPI	GCANNNNNTGC	1 cut(s)	71
BstC8I	GCNNGC	1 cut(s)	167
BstDEI	CTNAG	2 cut(s)	161, 263
BstF5I	GGATG	2 cut(s)	8, 112
BstFNI	CGCG	2 cut(s)	96, 366
BstHHI	GCGC	1 cut(s)	366
BstKTI	GATC	2 cut(s)	138, 223
BstMAI	GTCTC	2 cut(s)	279, 295
BstMBI	GATC	2 cut(s)	135, 220
BstMWI	GCNNNNNNNGC	3 cut(s)	71, 116, 518
BstNI	CCWGG	2 cut(s)	24, 458
BstSCI	CCNGG	2 cut(s)	22, 456
BstSLI	GKGCMC	2 cut(s)	42, 148
BstUI	CGCG	2 cut(s)	96, 366
BstV1I	GCAGC	1 cut(s)	61
BtsCI	GGATG	2 cut(s)	8, 112
BtsIMutI	CAGTG	2 cut(s)	208, 246
BtuMI	TCGCGA	1 cut(s)	96
Cac8I	GCNNGC	1 cut(s)	167
CfoI	GCGC	1 cut(s)	366
CviJI	RGCY	8 cut(s)	158, 169, 227, 377, 391, 422, 464, 543
CviKI_1	RGCY	8 cut(s)	158, 169, 227, 377, 391, 422, 464, 543
DdeI	CTNAG	2 cut(s)	161, 263
DpnI	GATC	2 cut(s)	137, 222
DpnII	GATC	2 cut(s)	135, 220
EciI	GGCGGA	2 cut(s)	285, 324
Eco130I	CCWWGG	1 cut(s)	102
Eco24I	GRGCYC	1 cut(s)	424
EcoRII	CCWGG	2 cut(s)	22, 456
EcoT14I	CCWWGG	1 cut(s)	102
EcoT38I	GRGCYC	1 cut(s)	424
ErhI	CCWWGG	1 cut(s)	102
Esp3I	CGTCTC	1 cut(s)	279
FaiI	YATR	2 cut(s)	134, 191
Fnu4HI	GCNGC	2 cut(s)	75, 541
FokI	GGATG	1 cut(s)	119
FriOI	GRGCYC	1 cut(s)	424
Fsp4HI	GCNGC	2 cut(s)	75, 541
FspBI	CTAG	1 cut(s)	170
GlaI	GCGC	1 cut(s)	365
GluI	GCNGC	2 cut(s)	75, 541
HhaI	GCGC	1 cut(s)	366
Hin6I	GCGC	1 cut(s)	364
HinP1I	GCGC	1 cut(s)	364
HinfI	GANTC	4 cut(s)	19, 86, 173, 251
Hpy166II	GTNNAC	1 cut(s)	40
Hpy188I	TCNGA	2 cut(s)	220, 275
Hpy188III	TCNNGA	3 cut(s)	16, 95, 502
Hpy8I	GTNNAC	1 cut(s)	40
Hpy99I	CGWCG	1 cut(s)	533
HpyAV	CCTTC	4 cut(s)	22, 41, 133, 530
HpyCH4III	ACNGT	2 cut(s)	396, 549
HpyCH4IV	ACGT	1 cut(s)	56
HpyCH4V	TGCA	4 cut(s)	40, 65, 119, 478
HpyF10VI	GCNNNNNNNGC	3 cut(s)	71, 116, 518
HpyF3I	CTNAG	2 cut(s)	161, 263
HpySE526I	ACGT	1 cut(s)	56
HspAI	GCGC	1 cut(s)	364
Kzo9I	GATC	2 cut(s)	135, 220
LmnI	GCTCC	3 cut(s)	382, 419, 469
LpnPI	CCDG	8 cut(s)	9, 36, 48, 237, 242, 443, 470, 470
Lsp1109I	GCAGC	1 cut(s)	61
LweI	GCATC	1 cut(s)	97
MaeI	CTAG	1 cut(s)	170
MaeII	ACGT	1 cut(s)	56
MalI	GATC	2 cut(s)	137, 222
MboI	GATC	2 cut(s)	135, 220
MhlI	GDGCHC	3 cut(s)	42, 148, 424
MlyI	GAGTC	1 cut(s)	167
MmeI	TCCRAC	2 cut(s)	453, 491
MnlI	CCTC	2 cut(s)	202, 526
MspR9I	CCNGG	2 cut(s)	24, 458
MvaI	CCWGG	2 cut(s)	24, 458
MvnI	CGCG	2 cut(s)	96, 366
MwoI	GCNNNNNNNGC	3 cut(s)	71, 116, 518
NdeII	GATC	2 cut(s)	135, 220
NlaIV	GGNNCC	1 cut(s)	421
NmeAIII	GCCGAG	1 cut(s)	324
NruI	TCGCGA	1 cut(s)	96
PfeI	GAWTC	3 cut(s)	19, 86, 251
PkrI	GCNGC	2 cut(s)	76, 542
PleI	GAGTC	1 cut(s)	167
PpsI	GAGTC	1 cut(s)	167
Psp6I	CCWGG	2 cut(s)	22, 456
PspGI	CCWGG	2 cut(s)	22, 456
PspN4I	GGNNCC	1 cut(s)	421
RruI	TCGCGA	1 cut(s)	96
SatI	GCNGC	2 cut(s)	75, 541
Sau3AI	GATC	2 cut(s)	135, 220
SchI	GAGTC	1 cut(s)	167
ScrFI	CCNGG	2 cut(s)	24, 458
SduI	GDGCHC	3 cut(s)	42, 148, 424
SetI	ASST	7 cut(s)	55, 59, 104, 171, 379, 466, 484
SfaNI	GCATC	1 cut(s)	97
SsiI	CCGC	2 cut(s)	296, 335
SspMI	CTAG	1 cut(s)	170
StyD4I	CCNGG	2 cut(s)	22, 456
StyI	CCWWGG	1 cut(s)	102
TaaI	ACNGT	2 cut(s)	396, 549
TaiI	ACGT	1 cut(s)	59
TaqI	TCGA	5 cut(s)	17, 318, 372, 398, 404
TfiI	GAWTC	3 cut(s)	19, 86, 251
TscAI	CASTG	2 cut(s)	208, 253
TseI	GCWGC	2 cut(s)	74, 540
TspRI	CASTG	2 cut(s)	208, 253
VneI	GTGCAC	1 cut(s)	38
XspI	CTAG	1 cut(s)	170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.