pycom07g01190

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0015717
Physical Location & Seq
Forward (+)
932045 .. 932462
418 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g01190.1

Sequence Viewer

Length: 363 bp
ATGCTCTGTTTTGAGTTCCAAGAGAACCATTTCAAGGTGCACCCTCAATTCTTGGTTCTGCAGCTACACCCTGTAAATCCTGCAGTGCATCCTACTTGTCTACCACCACAGCCGTGCTCTCTGTCAAAAGGATTGAGGCCGATATATGCAATCTCCTTGCTGCCCTTAGCTTTCTCCTTTGGTTCAAAAACGATGAAGTTGGAGCATGAGGAAATTGTGGTATTTTTGTTGTTGGGAGACCTTGAGTTCACAACCCACTCTCAAATGTCCCTTGTTGAGTTCTCAGATGGTGCTCAGGCTCGTGTTGTGCTTGAACCTAGAGAAACTAAAGGCTTTACTCTAATTAGGATCGTTACAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

121

Amino Acids

13.56

Weight (kDa)

6.27

Isoelectric Point (pI)

32.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 100
AclWI GGATC 1 cut(s) 356
AfiI CCNNNNNNNGG 1 cut(s) 34
AgsI TTSAA 3 cut(s) 34, 186, 314
AleI CACNNNNGTG 1 cut(s) 112
AluBI AGCT 2 cut(s) 64, 170
AluI AGCT 2 cut(s) 64, 170
Alw21I GWGCWC 3 cut(s) 42, 119, 295
Alw26I GTCTC 1 cut(s) 231
Alw44I GTGCAC 1 cut(s) 38
AlwI GGATC 1 cut(s) 356
AoxI GGCC 1 cut(s) 137
ApaLI GTGCAC 1 cut(s) 38
ApeKI GCWGC 2 cut(s) 61, 160
Asp700I GAANNNNTTC 1 cut(s) 29
BaeGI GKGCMC 1 cut(s) 42
BauI CACGAG 1 cut(s) 300
Bbv12I GWGCWC 3 cut(s) 42, 119, 295
BbvI GCAGC 2 cut(s) 73, 147
BccI CCATC 1 cut(s) 281
BceAI ACGGC 1 cut(s) 97
BcoDI GTCTC 1 cut(s) 231
BfaI CTAG 1 cut(s) 318
BfmI CTRYAG 2 cut(s) 59, 81
BisI GCNGC 2 cut(s) 62, 161
BlsI GCNGC 2 cut(s) 63, 162
BmsI GCATC 1 cut(s) 97
Bpu10I CCTNAGC 2 cut(s) 166, 294
BpuEI CTTGAG 1 cut(s) 263
BsaI GGTCTC 1 cut(s) 231
Bsc4I CCNNNNNNNGG 1 cut(s) 34
BseGI GGATG 1 cut(s) 88
BseLI CCNNNNNNNGG 1 cut(s) 34
BseMII CTCAG 2 cut(s) 297, 308
BseSI GKGCMC 1 cut(s) 42
BseXI GCAGC 2 cut(s) 73, 147
BshFI GGCC 1 cut(s) 139
BsiHKAI GWGCWC 3 cut(s) 42, 119, 295
BslFI GGGAC 1 cut(s) 253
BslI CCNNNNNNNGG 1 cut(s) 34
BsmAI GTCTC 1 cut(s) 231
BsmFI GGGAC 1 cut(s) 253
BsnI GGCC 1 cut(s) 139
Bso31I GGTCTC 1 cut(s) 231
Bsp1286I GDGCHC 3 cut(s) 42, 119, 295
Bsp143I GATC 1 cut(s) 348
BspANI GGCC 1 cut(s) 139
BspCNI CTCAG 2 cut(s) 296, 307
BspMAI CTGCAG 2 cut(s) 63, 85
BspPI GGATC 1 cut(s) 356
BspTNI GGTCTC 1 cut(s) 231
BssMI GATC 1 cut(s) 348
BssSI CACGAG 1 cut(s) 300
Bst2BI CACGAG 1 cut(s) 300
BstDEI CTNAG 3 cut(s) 166, 283, 294
BstF5I GGATG 1 cut(s) 88
BstKTI GATC 1 cut(s) 351
BstMAI GTCTC 1 cut(s) 231
BstMBI GATC 1 cut(s) 348
BstSFI CTRYAG 2 cut(s) 59, 81
BstSLI GKGCMC 1 cut(s) 42
BstV1I GCAGC 2 cut(s) 73, 147
BsuRI GGCC 1 cut(s) 139
BtsCI GGATG 1 cut(s) 88
BtsI GCAGTG 1 cut(s) 90
BtsIMutI CAGTG 1 cut(s) 90
CviAII CATG 1 cut(s) 206
CviJI RGCY 6 cut(s) 64, 112, 139, 170, 299, 333
CviKI_1 RGCY 6 cut(s) 64, 112, 139, 170, 299, 333
DdeI CTNAG 3 cut(s) 166, 283, 294
DpnI GATC 1 cut(s) 350
DpnII GATC 1 cut(s) 348
Eco31I GGTCTC 1 cut(s) 231
FaeI CATG 1 cut(s) 209
FaiI YATR 3 cut(s) 145, 147, 207
FaqI GGGAC 1 cut(s) 253
FatI CATG 1 cut(s) 205
FblI GTMKAC 1 cut(s) 100
Fnu4HI GCNGC 2 cut(s) 62, 161
FokI GGATG 1 cut(s) 75
Fsp4HI GCNGC 2 cut(s) 62, 161
FspBI CTAG 1 cut(s) 318
GluI GCNGC 2 cut(s) 62, 161
HaeIII GGCC 1 cut(s) 139
Hin1II CATG 1 cut(s) 209
Hpy166II GTNNAC 3 cut(s) 40, 101, 249
Hpy188I TCNGA 1 cut(s) 286
Hpy8I GTNNAC 3 cut(s) 40, 101, 249
HpyCH4V TGCA 5 cut(s) 40, 61, 83, 88, 149
HpyF3I CTNAG 3 cut(s) 166, 283, 294
Hsp92II CATG 1 cut(s) 209
Kzo9I GATC 1 cut(s) 348
LmnI GCTCC 1 cut(s) 202
LpnPI CCDG 3 cut(s) 84, 93, 281
Lsp1109I GCAGC 2 cut(s) 73, 147
LweI GCATC 1 cut(s) 97
MaeI CTAG 1 cut(s) 318
MaeIII GTNAC 1 cut(s) 352
MalI GATC 1 cut(s) 350
MboI GATC 1 cut(s) 348
MhlI GDGCHC 3 cut(s) 42, 119, 295
MluCI AATT 4 cut(s) 47, 213, 342, 358
MmeI TCCRAC 1 cut(s) 180
MnlI CCTC 3 cut(s) 54, 129, 202
MroXI GAANNNNTTC 1 cut(s) 29
MseI TTAA 1 cut(s) 361
MslI CAYNNNNRTG 1 cut(s) 112
NdeII GATC 1 cut(s) 348
NlaIII CATG 1 cut(s) 209
OliI CACNNNNGTG 1 cut(s) 112
PdmI GAANNNNTTC 1 cut(s) 29
PkrI GCNGC 2 cut(s) 63, 162
PstI CTGCAG 2 cut(s) 63, 85
RseI CAYNNNNRTG 1 cut(s) 112
SaqAI TTAA 1 cut(s) 361
SatI GCNGC 2 cut(s) 62, 161
Sau3AI GATC 1 cut(s) 348
SduI GDGCHC 3 cut(s) 42, 119, 295
SetI ASST 5 cut(s) 39, 66, 172, 243, 319
SfaNI GCATC 1 cut(s) 97
SfcI CTRYAG 2 cut(s) 59, 81
SmiMI CAYNNNNRTG 1 cut(s) 112
SmlI CTYRAG 1 cut(s) 242
SmoI CTYRAG 1 cut(s) 242
Sse9I AATT 4 cut(s) 47, 213, 342, 358
SspMI CTAG 1 cut(s) 318
TasI AATT 4 cut(s) 47, 213, 342, 358
Tru1I TTAA 1 cut(s) 361
Tru9I TTAA 1 cut(s) 361
TscAI CASTG 1 cut(s) 90
TseI GCWGC 2 cut(s) 61, 160
TspDTI ATGAA 1 cut(s) 209
TspRI CASTG 1 cut(s) 90
VneI GTGCAC 1 cut(s) 38
XmiI GTMKAC 1 cut(s) 100
XmnI GAANNNNTTC 1 cut(s) 29
XspI CTAG 1 cut(s) 318
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.