Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0015717

Physical Location & Seq

Genomic Coordinates Reverse (-)

31289077 .. 31290033

Gene Structure 957 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g32350.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGACTTTGCTCAGTTACACCGTGACTTGGCTTTCCATGTTGAGGGAGATTCTGATCCAGCCTCGATGTGTTTCGAGGAAGCTAAATCAATCTAGGTTGGTCACCAAAAACCTCACAACGGAGGGCAACCCATTGCGAATTTCATCGACAATCCATGACCATTCCATTCCGCCATTGCTCTCATCTTCACCGATGTTACGCGCACTGGCAACTTTAACCGTTAAACCACAGTCGAACGATTCCGTTGCAGCCCTAATTTCTCTGCCAGAATCGAAGAGAATGATTTATGCTTCGACGATGACCTCTATTTCGCGGTTTCTCTGTAAGCACTTTTTCTTTGATAATACAAAAACTGGAGCTGAGGTAGTTCTCTATTTGCGTTTCATTATAACAACTTCGAAAGTTATATTTCCTTCTCTTTTGACTATTGCATTTCAGAATGATAAATATGGTTGGATAAATTGGTATCTTATGGGTAAATTTGTGAAGAAGCATTTGTTTGCATTGCATATGTTTGATAAATTGCCTAAGAGATGGAGAGAAAACAATATGGCAATAACTGAATTGGTGAAGGAAAGGTTTTCCAATAAATACTTCCCATTTGATCCTTCCAACAACCATTCAATCCCACAAACCATTTTGTTATTGCGAGAATTATGTCGAACAAATCGTGGAGAGCAGAGGAGAGTTGTTACCAATACCTATTATCAGCTGCTTCTTTCTCAAAGTGACAACAATGTGAAGTTTATTGTTCTTGATCAGCTGACTGAGCTAAAGTCTTCTCATAGAGAAGTTGTAGCTAATATGTTCATGGACGTGCTGAGGGCACTTTCTAGTTATAATCTTGACATCAAGAGAAAGACCCTAGACATTGTTCTTAGCTTGGTTACTTGCACAAACATCAATGAGCTTGTTCTTATTTTGAAAAGGGAATCAAGACTCATATTGGAGAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005798 GO:0005829 GO:0005911 GO:0006810 GO:0006888 GO:0006890 GO:0006891 GO:0008150 GO:0009506 GO:0012505 GO:0012506 GO:0016020 GO:0016192 GO:0030054 GO:0030117 GO:0030120 GO:0030126 GO:0030135 GO:0030137 GO:0030659 GO:0030660 GO:0030662 GO:0030663 GO:0031090 GO:0031410 GO:0031982 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044433 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0048193 GO:0048475 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055044 GO:0097708 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Adaptin_N Coatamer_beta_C Coatomer_b_Cpla

Protein Analysis

319

Amino Acids

36.88

Weight (kDa)

9.87

Isoelectric Point (pI)

44.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Adaptin_N	PF01602	234 - 310	8.1e-10	Adaptin N terminal region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0015717)

Species	Orthologous Gene IDs
pyrus_communis	pycom01g04860 pycom05g02320 pycom05g08830 pycom07g01190 pycom08g13400 pycom09g17550 pycom09g18320 pycom12494g00040 pycom13g01880 pycom13g01890 pycom13g25640 pycom14g04790 pycom15g23500 pycom15g30850 pycom15g32350 pycom17g14110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	389, 840
AccII	CGCG	2 cut(s)	201, 313
AciI	CCGC	2 cut(s)	170, 313
AclWI	GGATC	2 cut(s)	49, 599
AcsI	RAATTY	2 cut(s)	138, 479
AfiI	CCNNNNNNNGG	3 cut(s)	27, 42, 118
AgsI	TTSAA	2 cut(s)	624, 925
AjiI	CACGTC	1 cut(s)	817
AjuI	GAANNNNNNNTTGG	2 cut(s)	578, 610
AluBI	AGCT	9 cut(s)	82, 359, 712, 763, 772, 800, 882, 910, 954
AluI	AGCT	9 cut(s)	82, 359, 712, 763, 772, 800, 882, 910, 954
AlwI	GGATC	2 cut(s)	49, 599
ApeKI	GCWGC	2 cut(s)	248, 712
ApoI	RAATTY	2 cut(s)	138, 479
ArsI	GACNNNNNNTTYG	2 cut(s)	292, 324
AspLEI	GCGC	1 cut(s)	203
AsuHPI	GGTGA	3 cut(s)	94, 180, 580
AsuII	TTCGAA	1 cut(s)	398
BaeGI	GKGCMC	1 cut(s)	829
BbsI	GAAGAC	1 cut(s)	771
BbvCI	CCTCAGC	2 cut(s)	360, 821
BbvI	GCAGC	2 cut(s)	260, 699
BccI	CCATC	1 cut(s)	528
BcgI	CGANNNNNNTGC	2 cut(s)	227, 261
BclI	TGATCA	1 cut(s)	757
BfaI	CTAG	4 cut(s)	93, 834, 866, 955
BisI	GCNGC	2 cut(s)	249, 713
BlsI	GCNGC	2 cut(s)	250, 714
BmgBI	CACGTC	1 cut(s)	817
BpiI	GAAGAC	1 cut(s)	771
BpmI	CTGGAG	1 cut(s)	375
Bpu10I	CCTNAGC	2 cut(s)	360, 821
Bpu14I	TTCGAA	1 cut(s)	398
BsaBI	GATNNNNATC	1 cut(s)	53
BsaXI	ACNNNNNCTCC	2 cut(s)	348, 378
Bsc4I	CCNNNNNNNGG	3 cut(s)	27, 42, 118
Bse1I	ACTGG	2 cut(s)	210, 358
Bse3DI	GCAATG	3 cut(s)	131, 173, 503
Bse8I	GATNNNNATC	1 cut(s)	53
BseJI	GATNNNNATC	1 cut(s)	53
BseLI	CCNNNNNNNGG	3 cut(s)	27, 42, 118
BseMI	GCAATG	3 cut(s)	131, 173, 503
BseMII	CTCAG	4 cut(s)	25, 351, 759, 812
BseNI	ACTGG	2 cut(s)	210, 358
BseRI	GAGGAG	1 cut(s)	697
BseSI	GKGCMC	1 cut(s)	829
BseXI	GCAGC	2 cut(s)	260, 699
Bsh1236I	CGCG	2 cut(s)	201, 313
BslI	CCNNNNNNNGG	3 cut(s)	27, 42, 118
Bsp119I	TTCGAA	1 cut(s)	398
Bsp1286I	GDGCHC	1 cut(s)	829
Bsp143I	GATC	3 cut(s)	54, 604, 757
BspACI	CCGC	2 cut(s)	170, 313
BspCNI	CTCAG	4 cut(s)	24, 352, 760, 813
BspFNI	CGCG	2 cut(s)	201, 313
BspPI	GGATC	2 cut(s)	49, 599
BspT104I	TTCGAA	1 cut(s)	398
BsrDI	GCAATG	3 cut(s)	131, 173, 503
BsrI	ACTGG	2 cut(s)	210, 358
BssMI	GATC	3 cut(s)	54, 604, 757
Bst4CI	ACNGT	3 cut(s)	22, 220, 231
Bst6I	CTCTTC	1 cut(s)	269
BstBI	TTCGAA	1 cut(s)	398
BstDEI	CTNAG	6 cut(s)	11, 360, 528, 768, 821, 878
BstEII	GGTNACC	1 cut(s)	100
BstFNI	CGCG	2 cut(s)	201, 313
BstHHI	GCGC	1 cut(s)	203
BstKTI	GATC	3 cut(s)	57, 607, 760
BstMBI	GATC	3 cut(s)	54, 604, 757
BstMWI	GCNNNNNNNGC	1 cut(s)	769
BstPI	GGTNACC	1 cut(s)	100
BstSLI	GKGCMC	1 cut(s)	829
BstUI	CGCG	2 cut(s)	201, 313
BstV1I	GCAGC	2 cut(s)	260, 699
BstV2I	GAAGAC	1 cut(s)	771
BtrI	CACGTC	1 cut(s)	817
BtsIMutI	CAGTG	1 cut(s)	203
CfoI	GCGC	1 cut(s)	203
CviAII	CATG	3 cut(s)	37, 155, 811
DdeI	CTNAG	6 cut(s)	11, 360, 528, 768, 821, 878
DpnI	GATC	3 cut(s)	56, 606, 759
DpnII	GATC	3 cut(s)	54, 604, 757
Eam1104I	CTCTTC	1 cut(s)	269
EarI	CTCTTC	1 cut(s)	269
EciI	GGCGGA	1 cut(s)	159
Eco91I	GGTNACC	1 cut(s)	100
EcoO65I	GGTNACC	1 cut(s)	100
FaeI	CATG	3 cut(s)	40, 158, 814
FatI	CATG	3 cut(s)	36, 154, 810
FauNDI	CATATG	1 cut(s)	510
FbaI	TGATCA	1 cut(s)	757
Fnu4HI	GCNGC	2 cut(s)	249, 713
Fsp4HI	GCNGC	2 cut(s)	249, 713
FspBI	CTAG	4 cut(s)	93, 834, 866, 955
GlaI	GCGC	1 cut(s)	202
GluI	GCNGC	2 cut(s)	249, 713
GsuI	CTGGAG	1 cut(s)	375
HhaI	GCGC	1 cut(s)	203
Hin1II	CATG	3 cut(s)	40, 158, 814
Hin6I	GCGC	1 cut(s)	201
HinP1I	GCGC	1 cut(s)	201
HinfI	GANTC	5 cut(s)	49, 239, 269, 932, 939
HphI	GGTGA	3 cut(s)	94, 180, 580
Hpy188I	TCNGA	2 cut(s)	54, 438
Hpy188III	TCNNGA	4 cut(s)	755, 845, 853, 936
Hpy99I	CGWCG	1 cut(s)	298
HpyAV	CCTTC	3 cut(s)	423, 565, 618
HpyCH4III	ACNGT	3 cut(s)	22, 220, 231
HpyCH4IV	ACGT	1 cut(s)	816
HpyCH4V	TGCA	5 cut(s)	248, 431, 503, 508, 894
HpyF10VI	GCNNNNNNNGC	1 cut(s)	769
HpyF3I	CTNAG	6 cut(s)	11, 360, 528, 768, 821, 878
HpySE526I	ACGT	1 cut(s)	816
Hsp92II	CATG	3 cut(s)	40, 158, 814
HspAI	GCGC	1 cut(s)	201
Ksp22I	TGATCA	1 cut(s)	757
Kzo9I	GATC	3 cut(s)	54, 604, 757
LmnI	GCTCC	1 cut(s)	356
LpnPI	CCDG	4 cut(s)	71, 191, 279, 339
Lsp1109I	GCAGC	2 cut(s)	260, 699
MaeI	CTAG	4 cut(s)	93, 834, 866, 955
MaeII	ACGT	1 cut(s)	816
MaeIII	GTNAC	7 cut(s)	14, 22, 100, 195, 691, 728, 886
MalI	GATC	3 cut(s)	56, 606, 759
MboI	GATC	3 cut(s)	54, 604, 757
MboII	GAAGA	4 cut(s)	177, 286, 499, 771
MhlI	GDGCHC	1 cut(s)	829
MluCI	AATT	7 cut(s)	138, 255, 460, 479, 521, 563, 653
MlyI	GAGTC	1 cut(s)	933
MmeI	TCCRAC	2 cut(s)	434, 636
MnlI	CCTC	9 cut(s)	36, 69, 72, 115, 122, 313, 355, 675, 816
MseI	TTAA	2 cut(s)	215, 222
MslI	CAYNNNNRTG	1 cut(s)	815
MspA1I	CMGCKG	2 cut(s)	712, 763
MvnI	CGCG	2 cut(s)	201, 313
MwoI	GCNNNNNNNGC	1 cut(s)	769
NdeI	CATATG	1 cut(s)	510
NdeII	GATC	3 cut(s)	54, 604, 757
NlaIII	CATG	3 cut(s)	40, 158, 814
NmuCI	GTSAC	3 cut(s)	22, 100, 728
NspV	TTCGAA	1 cut(s)	398
PcsI	WCGNNNNNNNCGW	1 cut(s)	667
PfeI	GAWTC	4 cut(s)	49, 239, 269, 932
PkrI	GCNGC	2 cut(s)	250, 714
PleI	GAGTC	1 cut(s)	933
PpsI	GAGTC	1 cut(s)	933
PsiI	TTATAA	2 cut(s)	389, 840
PspEI	GGTNACC	1 cut(s)	100
PvuII	CAGCTG	2 cut(s)	712, 763
RseI	CAYNNNNRTG	1 cut(s)	815
SaqAI	TTAA	2 cut(s)	215, 222
SatI	GCNGC	2 cut(s)	249, 713
Sau3AI	GATC	3 cut(s)	54, 604, 757
SchI	GAGTC	1 cut(s)	933
SduI	GDGCHC	1 cut(s)	829
SfuI	TTCGAA	1 cut(s)	398
SmiMI	CAYNNNNRTG	1 cut(s)	815
Sse9I	AATT	7 cut(s)	138, 255, 460, 479, 521, 563, 653
SsiI	CCGC	2 cut(s)	170, 313
SspMI	CTAG	4 cut(s)	93, 834, 866, 955
TaaI	ACNGT	3 cut(s)	22, 220, 231
TaiI	ACGT	1 cut(s)	819
TaqI	TCGA	8 cut(s)	64, 74, 146, 233, 272, 293, 398, 661
TasI	AATT	7 cut(s)	138, 255, 460, 479, 521, 563, 653
TfiI	GAWTC	4 cut(s)	49, 239, 269, 932
Tru1I	TTAA	2 cut(s)	215, 222
Tru9I	TTAA	2 cut(s)	215, 222
TscAI	CASTG	1 cut(s)	210
TseFI	GTSAC	3 cut(s)	22, 100, 728
TseI	GCWGC	2 cut(s)	248, 712
Tsp45I	GTSAC	3 cut(s)	22, 100, 728
TspDTI	ATGAA	3 cut(s)	132, 373, 799
TspGWI	ACGGA	2 cut(s)	134, 232
TspRI	CASTG	1 cut(s)	210
XapI	RAATTY	2 cut(s)	138, 479
XspI	CTAG	4 cut(s)	93, 834, 866, 955

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.