pycom15g30850

ATP binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0015717
Physical Location & Seq
Reverse (-)
28865870 .. 28866283
414 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g30850.1

Sequence Viewer

Length: 414 bp
ATGGGAGACTCCACTTCAACCCCTATGTTCGCTATCAGCGACGGGGGAGTTTCTGATCCGGCCCCGATGATTTCCGATGACGCTGCATCAATCGATCCCGGTCACAAAACAATTCCAAGAGTCGGACAACCCAACAGAGACGACAGCCCATCGCGAATCTCCTCGGTAACACCCATCGATTCCGTTCCGCCGTTGCTCTCGCCATCGCCGTTATTGCGAGCAATAGCAAATTCTCCTATCAAGCCACAGTCGAACTCGAACGCTTCAATGGCAGCCCACTCCAACAATACCATTTTTGAGCAACCAGGAAGCTCCAACAAGTGTGCAGGGTCTGGGTTTTACTCCAACCCCGATGCCTGCTATCAATGCTACGGGCGACTCACTTCCAGCCCCGTTGTTGTCGGATGGCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CobW_C cobW

Protein Analysis

138

Amino Acids

14.25

Weight (kDa)

5.45

Isoelectric Point (pI)

59.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 154
AciI CCGC 1 cut(s) 188
AclWI GGATC 2 cut(s) 50, 89
AcsI RAATTY 1 cut(s) 229
AfiI CCNNNNNNNGG 1 cut(s) 122
AgsI TTSAA 2 cut(s) 18, 267
AjnI CCWGG 1 cut(s) 304
AluBI AGCT 1 cut(s) 312
AluI AGCT 1 cut(s) 312
Alw26I GTCTC 1 cut(s) 132
AlwI GGATC 2 cut(s) 50, 89
AlwNI CAGNNNCTG 1 cut(s) 332
AoxI GGCC 1 cut(s) 60
ApeKI GCWGC 2 cut(s) 83, 272
ApoI RAATTY 1 cut(s) 229
AspS9I GGNCC 1 cut(s) 61
AsuC2I CCSGG 1 cut(s) 99
BbvI GCAGC 2 cut(s) 70, 284
BccI CCATC 4 cut(s) 157, 182, 211, 399
BceAI ACGGC 2 cut(s) 175, 193
BcgI CGANNNNNNTGC 2 cut(s) 65, 99
BciT130I CCWGG 1 cut(s) 306
BcnI CCSGG 1 cut(s) 99
BcoDI GTCTC 1 cut(s) 132
BisI GCNGC 2 cut(s) 84, 273
BlsI GCNGC 2 cut(s) 85, 274
Bme1390I CCNGG 2 cut(s) 99, 306
BmgT120I GGNCC 1 cut(s) 61
BmiI GGNNCC 1 cut(s) 63
BmrFI CCNGG 2 cut(s) 99, 306
BmsI GCATC 2 cut(s) 95, 343
BpuMI CCSGG 1 cut(s) 99
Bsa29I ATCGAT 2 cut(s) 93, 177
BsaJI CCNNGG 1 cut(s) 162
Bsc4I CCNNNNNNNGG 1 cut(s) 122
BseBI CCWGG 1 cut(s) 306
BseCI ATCGAT 2 cut(s) 93, 177
BseDI CCNNGG 1 cut(s) 162
BseGI GGATG 1 cut(s) 410
BseLI CCNNNNNNNGG 1 cut(s) 122
BseRI GAGGAG 1 cut(s) 151
BseXI GCAGC 2 cut(s) 70, 284
BsgI GTGCAG 1 cut(s) 345
Bsh1236I CGCG 1 cut(s) 154
BshFI GGCC 1 cut(s) 62
BshVI ATCGAT 2 cut(s) 93, 177
BsiSI CCGG 2 cut(s) 59, 99
BslI CCNNNNNNNGG 1 cut(s) 122
BsmAI GTCTC 1 cut(s) 132
BsmBI CGTCTC 1 cut(s) 132
BsnI GGCC 1 cut(s) 62
Bsp143I GATC 2 cut(s) 55, 94
Bsp68I TCGCGA 1 cut(s) 154
BspACI CCGC 1 cut(s) 188
BspANI GGCC 1 cut(s) 62
BspDI ATCGAT 2 cut(s) 93, 177
BspFNI CGCG 1 cut(s) 154
BspLI GGNNCC 1 cut(s) 63
BspPI GGATC 2 cut(s) 50, 89
BssECI CCNNGG 1 cut(s) 162
BssMI GATC 2 cut(s) 55, 94
Bst2UI CCWGG 1 cut(s) 306
Bst4CI ACNGT 1 cut(s) 249
BstC8I GCNNGC 2 cut(s) 219, 358
BstF5I GGATG 1 cut(s) 410
BstFNI CGCG 1 cut(s) 154
BstKTI GATC 2 cut(s) 58, 97
BstMAI GTCTC 1 cut(s) 132
BstMBI GATC 2 cut(s) 55, 94
BstMWI GCNNNNNNNGC 3 cut(s) 214, 269, 366
BstNI CCWGG 1 cut(s) 306
BstSCI CCNGG 2 cut(s) 97, 304
BstUI CGCG 1 cut(s) 154
BstV1I GCAGC 2 cut(s) 70, 284
Bsu15I ATCGAT 2 cut(s) 93, 177
BsuRI GGCC 1 cut(s) 62
BsuTUI ATCGAT 2 cut(s) 93, 177
BtgZI GCGATG 2 cut(s) 135, 189
BtsCI GGATG 1 cut(s) 410
BtuMI TCGCGA 1 cut(s) 154
Cac8I GCNNGC 2 cut(s) 219, 358
CaiI CAGNNNCTG 1 cut(s) 332
Cfr13I GGNCC 1 cut(s) 61
ClaI ATCGAT 2 cut(s) 93, 177
CseI GACGC 1 cut(s) 89
CviJI RGCY 6 cut(s) 62, 147, 244, 275, 312, 390
CviKI_1 RGCY 6 cut(s) 62, 147, 244, 275, 312, 390
DpnI GATC 2 cut(s) 57, 96
DpnII GATC 2 cut(s) 55, 94
EciI GGCGGA 1 cut(s) 177
EcoRII CCWGG 1 cut(s) 304
Esp3I CGTCTC 1 cut(s) 132
FaiI YATR 1 cut(s) 26
Fnu4HI GCNGC 2 cut(s) 84, 273
Fsp4HI GCNGC 2 cut(s) 84, 273
GluI GCNGC 2 cut(s) 84, 273
HaeIII GGCC 1 cut(s) 62
HapII CCGG 2 cut(s) 59, 99
HgaI GACGC 1 cut(s) 89
HinfI GANTC 5 cut(s) 8, 120, 156, 179, 378
HpaII CCGG 2 cut(s) 59, 99
Hpy188I TCNGA 4 cut(s) 55, 76, 125, 404
Hpy188III TCNNGA 1 cut(s) 153
Hpy99I CGWCG 1 cut(s) 44
HpyCH4III ACNGT 1 cut(s) 249
HpyCH4V TGCA 2 cut(s) 86, 326
HpyF10VI GCNNNNNNNGC 3 cut(s) 214, 269, 366
Kzo9I GATC 2 cut(s) 55, 94
LmnI GCTCC 1 cut(s) 317
LpnPI CCDG 8 cut(s) 72, 112, 291, 312, 318, 318, 370, 400
Lsp1109I GCAGC 2 cut(s) 70, 284
LweI GCATC 2 cut(s) 95, 343
MaeIII GTNAC 2 cut(s) 101, 166
MalI GATC 2 cut(s) 57, 96
MboI GATC 2 cut(s) 55, 94
MluCI AATT 2 cut(s) 111, 229
MlyI GAGTC 3 cut(s) 2, 129, 372
MmeI TCCRAC 5 cut(s) 103, 306, 339, 369, 382
MnlI CCTC 1 cut(s) 172
MspI CCGG 2 cut(s) 59, 99
MspR9I CCNGG 2 cut(s) 99, 306
MvaI CCWGG 1 cut(s) 306
MvnI CGCG 1 cut(s) 154
MwoI GCNNNNNNNGC 3 cut(s) 214, 269, 366
NciI CCSGG 1 cut(s) 99
NdeII GATC 2 cut(s) 55, 94
NlaIV GGNNCC 1 cut(s) 63
NmuCI GTSAC 1 cut(s) 101
NruI TCGCGA 1 cut(s) 154
PcsI WCGNNNNNNNCGW 2 cut(s) 36, 206
PfeI GAWTC 2 cut(s) 156, 179
PkrI GCNGC 2 cut(s) 85, 274
PleI GAGTC 3 cut(s) 2, 128, 372
PpsI GAGTC 3 cut(s) 2, 128, 372
Psp6I CCWGG 1 cut(s) 304
PspGI CCWGG 1 cut(s) 304
PspN4I GGNNCC 1 cut(s) 63
PspPI GGNCC 1 cut(s) 61
PstNI CAGNNNCTG 1 cut(s) 332
RruI TCGCGA 1 cut(s) 154
SatI GCNGC 2 cut(s) 84, 273
Sau3AI GATC 2 cut(s) 55, 94
Sau96I GGNCC 1 cut(s) 61
SchI GAGTC 3 cut(s) 2, 129, 372
ScrFI CCNGG 2 cut(s) 99, 306
SetI ASST 1 cut(s) 314
SfaNI GCATC 2 cut(s) 95, 343
Sse9I AATT 2 cut(s) 111, 229
SsiI CCGC 1 cut(s) 188
StyD4I CCNGG 2 cut(s) 97, 304
TaaI ACNGT 1 cut(s) 249
TaqI TCGA 4 cut(s) 93, 177, 251, 257
TasI AATT 2 cut(s) 111, 229
TfiI GAWTC 2 cut(s) 156, 179
TseFI GTSAC 1 cut(s) 101
TseI GCWGC 2 cut(s) 83, 272
Tsp45I GTSAC 1 cut(s) 101
TspGWI ACGGA 1 cut(s) 172
XapI RAATTY 1 cut(s) 229
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.