Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0015717

Physical Location & Seq

Genomic Coordinates Forward (+)

22361928 .. 22362980

Gene Structure 1053 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g25640.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGATTTTTTTTGTTTTTAATAATTTTTTTAATAATTTTTTAATAAAAATGGGTCCCGGATCAAGTATAACATTGACACAAATTCGTAAGATGAGGTATGACATTTTTTTTGTCATTAACCCAAAGAAATATAAACAAAAGCAATTCAAGAGCACTGCTCACTCTCTCTCTTCCTTTCCTCTCTCTCTCTCTATCCTTTGTGTTTCTTGCAGTATAGAAGCTACAAATTACCAATTATGCACCTCTGTATATGTTGTATTGAGATCCTTGACTTCCAATCTTAAAAATAGGATGGCCATATGTCACGCTTTTTTGAAGTTTGTCTTTGCGTTTCCTACTGGTGTTAATGAGGTCATGTTTGAAGATTTCTTGAATGCTAAATGTTGGGGGTTTCGTAAATACCTTGTGGGCAAATTAGAGAAAGGGATTTTGAATGCAACTACGTTGTTTGACAAAATGTCAAAGAGATGGAGCGAGAACAATATGGGCACCTTTTTGTACTTTCGACCTATATGGGATCCAGGAGATGGATTAGCTAAACCTCTAGGTGTGACGTTCTGTTTCAAGTGCCTTTGGTCAATGGGTATTCATGGAAGTCCATATTTTCGTTTGCAGCATTGGATCAATTTCTGTACATCAATATGTTTTGCTTTCAAGAGTTATTTTTCCTTGACTTATCTTGAGGTCAATTTGTCAATGCCGTCTTCTCTTGCCTTCGCAGGATTGGAAACTTGTTGGGGGCAATATGGCACAAGTAAGGGTGTCGAACCACAGGGACTAGACCTCTACAAATTATTATCTTTATATGAACCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000050 GO:0000053 GO:0003674 GO:0003824 GO:0004055 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006525 GO:0006526 GO:0006575 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016874 GO:0016879 GO:0019627 GO:0019752 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0071704 GO:0071941 GO:0072350 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00220 ko00250 ko01100 ko01110 ko01130 ko01230 ko05418 map00220 map00250 map01100 map01110 map01130 map01230 map05418

Pfam Domains

Protein Families

Arginosuc_synth

Protein Analysis

272

Amino Acids

31.14

Weight (kDa)

9.3

Isoelectric Point (pI)

36.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015717)

Species	Orthologous Gene IDs
pyrus_communis	pycom01g04860 pycom05g02320 pycom05g08830 pycom07g01190 pycom08g13400 pycom09g17550 pycom09g18320 pycom12494g00040 pycom13g01880 pycom13g01890 pycom13g25640 pycom14g04790 pycom15g23500 pycom15g30850 pycom15g32350 pycom17g14110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	488
AccB7I	CCANNNNNTGG	1 cut(s)	527
AclWI	GGATC	5 cut(s)	67, 258, 512, 525, 629
AcoI	YGGCCR	1 cut(s)	294
AcsI	RAATTY	1 cut(s)	81
AfaI	GTAC	2 cut(s)	500, 634
AfiI	CCNNNNNNNGG	1 cut(s)	527
AgsI	TTSAA	7 cut(s)	148, 316, 362, 373, 433, 565, 655
AhdI	GACNNNNNGTC	1 cut(s)	457
AjnI	CCWGG	1 cut(s)	520
AluBI	AGCT	2 cut(s)	221, 536
AluI	AGCT	2 cut(s)	221, 536
Alw21I	GWGCWC	1 cut(s)	155
AlwI	GGATC	5 cut(s)	67, 258, 512, 525, 629
AoxI	GGCC	1 cut(s)	294
ApeKI	GCWGC	1 cut(s)	613
ApoI	RAATTY	1 cut(s)	81
ArsI	GACNNNNNNTTYG	2 cut(s)	92, 124
AspS9I	GGNCC	1 cut(s)	53
AsuC2I	CCSGG	1 cut(s)	57
AvaII	GGWCC	1 cut(s)	53
BaeGI	GKGCMC	1 cut(s)	491
BalI	TGGCCA	1 cut(s)	296
BamHI	GGATCC	1 cut(s)	517
BanI	GGYRCC	1 cut(s)	488
BbsI	GAAGAC	1 cut(s)	696
Bbv12I	GWGCWC	1 cut(s)	155
BbvI	GCAGC	1 cut(s)	625
BccI	CCATC	3 cut(s)	286, 462, 521
BceAI	ACGGC	1 cut(s)	685
BciT130I	CCWGG	1 cut(s)	522
BcnI	CCSGG	1 cut(s)	57
BfaI	CTAG	2 cut(s)	545, 779
BisI	GCNGC	1 cut(s)	614
BlsI	GCNGC	1 cut(s)	615
Bme1390I	CCNGG	2 cut(s)	57, 522
Bme18I	GGWCC	1 cut(s)	53
BmeRI	GACNNNNNGTC	1 cut(s)	457
BmgT120I	GGNCC	1 cut(s)	53
BmiI	GGNNCC	4 cut(s)	54, 55, 490, 519
BmrFI	CCNGG	2 cut(s)	57, 522
BpiI	GAAGAC	1 cut(s)	696
BplI	GAGNNNNNCTC	2 cut(s)	142, 174
BpuEI	CTTGAG	1 cut(s)	701
BpuMI	CCSGG	1 cut(s)	57
Bsc4I	CCNNNNNNNGG	1 cut(s)	527
Bse1I	ACTGG	1 cut(s)	343
BseBI	CCWGG	1 cut(s)	522
BseGI	GGATG	1 cut(s)	297
BseLI	CCNNNNNNNGG	1 cut(s)	527
BseNI	ACTGG	1 cut(s)	343
BseSI	GKGCMC	1 cut(s)	491
BseXI	GCAGC	1 cut(s)	625
BshFI	GGCC	1 cut(s)	296
BshNI	GGYRCC	1 cut(s)	488
BsiHKAI	GWGCWC	1 cut(s)	155
BsiSI	CCGG	1 cut(s)	57
BslFI	GGGAC	2 cut(s)	39, 789
BslI	CCNNNNNNNGG	1 cut(s)	527
BsmFI	GGGAC	2 cut(s)	39, 789
BsmI	GAATGC	2 cut(s)	379, 439
BsnI	GGCC	1 cut(s)	296
Bsp1286I	GDGCHC	2 cut(s)	155, 491
Bsp1407I	TGTACA	1 cut(s)	632
Bsp143I	GATC	4 cut(s)	59, 263, 517, 621
BspANI	GGCC	1 cut(s)	296
BspLI	GGNNCC	4 cut(s)	54, 55, 490, 519
BspPI	GGATC	5 cut(s)	67, 258, 512, 525, 629
BspT107I	GGYRCC	1 cut(s)	488
BsrGI	TGTACA	1 cut(s)	632
BsrI	ACTGG	1 cut(s)	343
BssMI	GATC	4 cut(s)	59, 263, 517, 621
Bst2UI	CCWGG	1 cut(s)	522
Bst6I	CTCTTC	1 cut(s)	175
BstAUI	TGTACA	1 cut(s)	632
BstF5I	GGATG	1 cut(s)	297
BstKTI	GATC	4 cut(s)	62, 266, 520, 624
BstMBI	GATC	4 cut(s)	59, 263, 517, 621
BstNI	CCWGG	1 cut(s)	522
BstSCI	CCNGG	2 cut(s)	55, 520
BstSLI	GKGCMC	1 cut(s)	491
BstV1I	GCAGC	1 cut(s)	625
BstV2I	GAAGAC	1 cut(s)	696
BstX2I	RGATCY	2 cut(s)	263, 517
BstYI	RGATCY	2 cut(s)	263, 517
BsuRI	GGCC	1 cut(s)	296
BtsCI	GGATG	1 cut(s)	297
BtsI	GCAGTG	1 cut(s)	153
BtsIMutI	CAGTG	1 cut(s)	153
Cfr13I	GGNCC	1 cut(s)	53
Csp6I	GTAC	2 cut(s)	499, 633
CviAII	CATG	2 cut(s)	355, 590
CviJI	RGCY	3 cut(s)	221, 296, 536
CviKI_1	RGCY	3 cut(s)	221, 296, 536
CviQI	GTAC	2 cut(s)	499, 633
DpnI	GATC	4 cut(s)	61, 265, 519, 623
DpnII	GATC	4 cut(s)	59, 263, 517, 621
DriI	GACNNNNNGTC	1 cut(s)	457
EaeI	YGGCCR	1 cut(s)	294
Eam1104I	CTCTTC	1 cut(s)	175
Eam1105I	GACNNNNNGTC	1 cut(s)	457
EarI	CTCTTC	1 cut(s)	175
Eco47I	GGWCC	1 cut(s)	53
EcoO109I	RGGNCCY	1 cut(s)	53
EcoRII	CCWGG	1 cut(s)	520
FaeI	CATG	2 cut(s)	358, 593
FalI	AAGNNNNNCTT	2 cut(s)	308, 340
FaqI	GGGAC	2 cut(s)	39, 789
FatI	CATG	2 cut(s)	354, 589
FauNDI	CATATG	1 cut(s)	299
Fnu4HI	GCNGC	1 cut(s)	614
FokI	GGATG	1 cut(s)	304
Fsp4HI	GCNGC	1 cut(s)	614
FspBI	CTAG	2 cut(s)	545, 779
GluI	GCNGC	1 cut(s)	614
HaeIII	GGCC	1 cut(s)	296
HapII	CCGG	1 cut(s)	57
Hin1II	CATG	2 cut(s)	358, 593
HpaII	CCGG	1 cut(s)	57
Hpy188III	TCNNGA	4 cut(s)	148, 370, 655, 680
HpyAV	CCTTC	1 cut(s)	724
HpyCH4IV	ACGT	2 cut(s)	443, 554
HpyCH4V	TGCA	4 cut(s)	210, 240, 437, 613
HpySE526I	ACGT	2 cut(s)	443, 554
Hsp92II	CATG	2 cut(s)	358, 593
KflI	GGGWCCC	1 cut(s)	53
Kzo9I	GATC	4 cut(s)	59, 263, 517, 621
LmnI	GCTCC	1 cut(s)	471
LpnPI	CCDG	6 cut(s)	70, 324, 507, 534, 705, 758
Lsp1109I	GCAGC	1 cut(s)	625
MaeI	CTAG	2 cut(s)	545, 779
MaeII	ACGT	2 cut(s)	443, 554
MaeIII	GTNAC	2 cut(s)	302, 550
MalI	GATC	4 cut(s)	61, 265, 519, 623
MboI	GATC	4 cut(s)	59, 263, 517, 621
MboII	GAAGA	3 cut(s)	162, 374, 696
MflI	RGATCY	2 cut(s)	263, 517
MhlI	GDGCHC	2 cut(s)	155, 491
MlsI	TGGCCA	1 cut(s)	296
MluNI	TGGCCA	1 cut(s)	296
MnlI	CCTC	7 cut(s)	87, 189, 253, 343, 552, 676, 794
Mox20I	TGGCCA	1 cut(s)	296
MscI	TGGCCA	1 cut(s)	296
MseI	TTAA	6 cut(s)	18, 30, 41, 117, 282, 345
MslI	CAYNNNNRTG	1 cut(s)	640
Msp20I	TGGCCA	1 cut(s)	296
MspI	CCGG	1 cut(s)	57
MspR9I	CCNGG	2 cut(s)	57, 522
Mva1269I	GAATGC	2 cut(s)	379, 439
MvaI	CCWGG	1 cut(s)	522
NciI	CCSGG	1 cut(s)	57
NdeI	CATATG	1 cut(s)	299
NdeII	GATC	4 cut(s)	59, 263, 517, 621
NlaIII	CATG	2 cut(s)	358, 593
NlaIV	GGNNCC	4 cut(s)	54, 55, 490, 519
NmuCI	GTSAC	2 cut(s)	302, 550
PctI	GAATGC	2 cut(s)	379, 439
PflMI	CCANNNNNTGG	1 cut(s)	527
PfoI	TCCNGGA	2 cut(s)	55, 520
PkrI	GCNGC	1 cut(s)	615
PpuMI	RGGWCCY	1 cut(s)	53
Psp5II	RGGWCCY	1 cut(s)	53
Psp6I	CCWGG	1 cut(s)	520
PspGI	CCWGG	1 cut(s)	520
PspN4I	GGNNCC	4 cut(s)	54, 55, 490, 519
PspPI	GGNCC	1 cut(s)	53
PspPPI	RGGWCCY	1 cut(s)	53
PsuI	RGATCY	2 cut(s)	263, 517
RsaI	GTAC	2 cut(s)	500, 634
RsaNI	GTAC	2 cut(s)	499, 633
RseI	CAYNNNNRTG	1 cut(s)	640
SaqAI	TTAA	6 cut(s)	18, 30, 41, 117, 282, 345
SatI	GCNGC	1 cut(s)	614
Sau3AI	GATC	4 cut(s)	59, 263, 517, 621
Sau96I	GGNCC	1 cut(s)	53
ScrFI	CCNGG	2 cut(s)	57, 522
SduI	GDGCHC	2 cut(s)	155, 491
SinI	GGWCC	1 cut(s)	53
SmiMI	CAYNNNNRTG	1 cut(s)	640
SmlI	CTYRAG	1 cut(s)	680
SmoI	CTYRAG	1 cut(s)	680
SspMI	CTAG	2 cut(s)	545, 779
StyD4I	CCNGG	2 cut(s)	55, 520
TaiI	ACGT	2 cut(s)	446, 557
TaqI	TCGA	2 cut(s)	505, 765
TatI	WGTACW	2 cut(s)	498, 632
Tru1I	TTAA	6 cut(s)	18, 30, 41, 117, 282, 345
Tru9I	TTAA	6 cut(s)	18, 30, 41, 117, 282, 345
TscAI	CASTG	1 cut(s)	160
TseFI	GTSAC	2 cut(s)	302, 550
TseI	GCWGC	1 cut(s)	613
Tsp45I	GTSAC	2 cut(s)	302, 550
TspDTI	ATGAA	1 cut(s)	578
TspRI	CASTG	1 cut(s)	160
Van91I	CCANNNNNTGG	1 cut(s)	527
VpaK11BI	GGWCC	1 cut(s)	53
XapI	RAATTY	1 cut(s)	81
XspI	CTAG	2 cut(s)	545, 779

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.