The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins
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| Species | Orthologous Gene IDs |
|---|---|
| pyrus_communis | pycom01g04860 pycom05g02320 pycom05g08830 pycom07g01190 pycom08g13400 pycom09g17550 pycom09g18320 pycom12494g00040 pycom13g01880 pycom13g01890 pycom13g25640 pycom14g04790 pycom15g23500 pycom15g30850 pycom15g32350 pycom17g14110 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 300 |
| AclWI | GGATC | 2 cut(s) | 76, 265 |
| AfaI | GTAC | 1 cut(s) | 327 |
| AgsI | TTSAA | 2 cut(s) | 239, 246 |
| AjnI | CCWGG | 1 cut(s) | 16 |
| AluBI | AGCT | 3 cut(s) | 12, 242, 281 |
| AluI | AGCT | 3 cut(s) | 12, 242, 281 |
| AlwI | GGATC | 2 cut(s) | 76, 265 |
| AoxI | GGCC | 1 cut(s) | 112 |
| ApeKI | GCWGC | 2 cut(s) | 12, 254 |
| AspS9I | GGNCC | 1 cut(s) | 112 |
| AsuHPI | GGTGA | 1 cut(s) | 289 |
| BbvI | GCAGC | 1 cut(s) | 241 |
| BciT130I | CCWGG | 1 cut(s) | 18 |
| BciVI | GTATCC | 1 cut(s) | 37 |
| BfaI | CTAG | 2 cut(s) | 116, 159 |
| BfuI | GTATCC | 1 cut(s) | 37 |
| BisI | GCNGC | 2 cut(s) | 13, 255 |
| BlsI | GCNGC | 2 cut(s) | 14, 256 |
| Bme1390I | CCNGG | 1 cut(s) | 18 |
| BmgT120I | GGNCC | 1 cut(s) | 112 |
| BmrFI | CCNGG | 1 cut(s) | 18 |
| BmsI | GCATC | 2 cut(s) | 196, 256 |
| BsaBI | GATNNNNATC | 1 cut(s) | 125 |
| BsaJI | CCNNGG | 2 cut(s) | 16, 201 |
| Bse8I | GATNNNNATC | 1 cut(s) | 125 |
| BseBI | CCWGG | 1 cut(s) | 18 |
| BseDI | CCNNGG | 2 cut(s) | 16, 201 |
| BseGI | GGATG | 2 cut(s) | 143, 211 |
| BseJI | GATNNNNATC | 1 cut(s) | 125 |
| BseXI | GCAGC | 1 cut(s) | 241 |
| BsgI | GTGCAG | 2 cut(s) | 31, 276 |
| BshFI | GGCC | 1 cut(s) | 114 |
| BsnI | GGCC | 1 cut(s) | 114 |
| Bsp143I | GATC | 3 cut(s) | 81, 126, 270 |
| Bsp19I | CCATGG | 1 cut(s) | 201 |
| BspACI | CCGC | 1 cut(s) | 300 |
| BspANI | GGCC | 1 cut(s) | 114 |
| BspPI | GGATC | 2 cut(s) | 76, 265 |
| BssECI | CCNNGG | 2 cut(s) | 16, 201 |
| BssMI | GATC | 3 cut(s) | 81, 126, 270 |
| BssT1I | CCWWGG | 1 cut(s) | 201 |
| Bst2UI | CCWGG | 1 cut(s) | 18 |
| BstC8I | GCNNGC | 2 cut(s) | 211, 252 |
| BstDSI | CCRYGG | 1 cut(s) | 201 |
| BstF5I | GGATG | 2 cut(s) | 143, 211 |
| BstKTI | GATC | 3 cut(s) | 84, 129, 273 |
| BstMBI | GATC | 3 cut(s) | 81, 126, 270 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 206, 299 |
| BstNI | CCWGG | 1 cut(s) | 18 |
| BstSCI | CCNGG | 1 cut(s) | 16 |
| BstV1I | GCAGC | 1 cut(s) | 241 |
| BsuI | GTATCC | 1 cut(s) | 37 |
| BsuRI | GGCC | 1 cut(s) | 114 |
| BtgI | CCRYGG | 1 cut(s) | 201 |
| BtsCI | GGATG | 2 cut(s) | 143, 211 |
| BtsI | GCAGTG | 1 cut(s) | 219 |
| BtsIMutI | CAGTG | 1 cut(s) | 219 |
| Cac8I | GCNNGC | 2 cut(s) | 211, 252 |
| Cfr13I | GGNCC | 1 cut(s) | 112 |
| Csp6I | GTAC | 1 cut(s) | 326 |
| CviAII | CATG | 1 cut(s) | 202 |
| CviJI | RGCY | 5 cut(s) | 12, 42, 114, 242, 281 |
| CviKI_1 | RGCY | 5 cut(s) | 12, 42, 114, 242, 281 |
| CviQI | GTAC | 1 cut(s) | 326 |
| DpnI | GATC | 3 cut(s) | 83, 128, 272 |
| DpnII | GATC | 3 cut(s) | 81, 126, 270 |
| Eco130I | CCWWGG | 1 cut(s) | 201 |
| EcoO109I | RGGNCCY | 1 cut(s) | 112 |
| EcoRII | CCWGG | 1 cut(s) | 16 |
| EcoT14I | CCWWGG | 1 cut(s) | 201 |
| ErhI | CCWWGG | 1 cut(s) | 201 |
| FaeI | CATG | 1 cut(s) | 205 |
| FaiI | YATR | 4 cut(s) | 101, 203, 284, 334 |
| FatI | CATG | 1 cut(s) | 201 |
| Fnu4HI | GCNGC | 2 cut(s) | 13, 255 |
| FokI | GGATG | 2 cut(s) | 130, 218 |
| Fsp4HI | GCNGC | 2 cut(s) | 13, 255 |
| FspBI | CTAG | 2 cut(s) | 116, 159 |
| GluI | GCNGC | 2 cut(s) | 13, 255 |
| HaeIII | GGCC | 1 cut(s) | 114 |
| Hin1II | CATG | 1 cut(s) | 205 |
| HindIII | AAGCTT | 1 cut(s) | 240 |
| HinfI | GANTC | 2 cut(s) | 287, 319 |
| HphI | GGTGA | 1 cut(s) | 289 |
| Hpy166II | GTNNAC | 1 cut(s) | 175 |
| Hpy188III | TCNNGA | 2 cut(s) | 79, 263 |
| Hpy8I | GTNNAC | 1 cut(s) | 175 |
| HpyAV | CCTTC | 2 cut(s) | 157, 176 |
| HpyCH4V | TGCA | 5 cut(s) | 48, 209, 224, 257, 293 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 206, 299 |
| Hsp92II | CATG | 1 cut(s) | 205 |
| Kzo9I | GATC | 3 cut(s) | 81, 126, 270 |
| LpnPI | CCDG | 2 cut(s) | 3, 30 |
| Lsp1109I | GCAGC | 1 cut(s) | 241 |
| LweI | GCATC | 2 cut(s) | 196, 256 |
| MaeI | CTAG | 2 cut(s) | 116, 159 |
| MaeIII | GTNAC | 1 cut(s) | 91 |
| MalI | GATC | 3 cut(s) | 83, 128, 272 |
| MboI | GATC | 3 cut(s) | 81, 126, 270 |
| MluCI | AATT | 1 cut(s) | 258 |
| MnlI | CCTC | 6 cut(s) | 40, 53, 74, 86, 95, 224 |
| MseI | TTAA | 1 cut(s) | 108 |
| MspR9I | CCNGG | 1 cut(s) | 18 |
| MvaI | CCWGG | 1 cut(s) | 18 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 206, 299 |
| NcoI | CCATGG | 1 cut(s) | 201 |
| NdeII | GATC | 3 cut(s) | 81, 126, 270 |
| NlaIII | CATG | 1 cut(s) | 205 |
| PfeI | GAWTC | 2 cut(s) | 287, 319 |
| PkrI | GCNGC | 2 cut(s) | 14, 256 |
| Psp6I | CCWGG | 1 cut(s) | 16 |
| PspGI | CCWGG | 1 cut(s) | 16 |
| PspPI | GGNCC | 1 cut(s) | 112 |
| RsaI | GTAC | 1 cut(s) | 327 |
| RsaNI | GTAC | 1 cut(s) | 326 |
| SaqAI | TTAA | 1 cut(s) | 108 |
| SatI | GCNGC | 2 cut(s) | 13, 255 |
| Sau3AI | GATC | 3 cut(s) | 81, 126, 270 |
| Sau96I | GGNCC | 1 cut(s) | 112 |
| ScrFI | CCNGG | 1 cut(s) | 18 |
| SetI | ASST | 5 cut(s) | 14, 22, 244, 283, 315 |
| SfaNI | GCATC | 2 cut(s) | 196, 256 |
| Sse9I | AATT | 1 cut(s) | 258 |
| SsiI | CCGC | 1 cut(s) | 300 |
| SspMI | CTAG | 2 cut(s) | 116, 159 |
| StyD4I | CCNGG | 1 cut(s) | 16 |
| StyI | CCWWGG | 1 cut(s) | 201 |
| TaqI | TCGA | 2 cut(s) | 80, 125 |
| TasI | AATT | 1 cut(s) | 258 |
| TatI | WGTACW | 1 cut(s) | 325 |
| TfiI | GAWTC | 2 cut(s) | 287, 319 |
| Tru1I | TTAA | 1 cut(s) | 108 |
| Tru9I | TTAA | 1 cut(s) | 108 |
| TscAI | CASTG | 1 cut(s) | 226 |
| TseI | GCWGC | 2 cut(s) | 12, 254 |
| TspRI | CASTG | 1 cut(s) | 226 |
| XspI | CTAG | 2 cut(s) | 116, 159 |