pycom05g11060

Proline-rich protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0010868
Physical Location & Seq
Forward (+)
14519049 .. 14522711
3663 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1905 bp
ATGAATGACATTGTGATATGGGGGATGAAGTCGGTATGCACGTTACGGTCCTTTTCTTCTCCCCTAAACGCAAGGACACCCCTAAAGAAAGGGTCCCTAGGGACCCTAACCTCATGTGAAGCCCTTAAATTTCAGTCTTACAGAATAAGCCGTTTTCTTCTTGAACTTTCTCTCCCCCGCACGTCTGTGTTGGGGGTAGTGTTCCCAATGAAGATTTTCCAAAAGTGCTTCTGGCTATGTGTGCTTTTTGTGAGCTTTAGCCATGCTGAGCAGACAATTGAGGTAGTTGGGGTTGGAGAATGCACTGACTGTGCTCGGAATAACATTAAGACTAGCCAAGCCTTTTCAGGTCTTCGTGTAACAATTGACTGCAAGCCCGAAAATGGGCACTTCAAAACAAGAGGTGTTGGGGAGCTCAATGAACAGGGAGAGTTCAAAGTCTCACTTCCTAAAGAGATTGTGAAAGAAGAAAACCAACTAAAAGAGGAATGTTATGCCCAACTCCACAGTGCATCAGCTGCCCCTTGTGCTGCCCATGACGGCCTAAAATCCACAAAAATAGTCTTCAAGTCCAAGGCAAGTGATGGGACACAAACCCTTGGAGTGGTTGGTGGAAATCTCAAATTTTCACCTGTGACTTGCACTTCTGCCTTCTTTTGGCCTCACAAGAAGCATCCACTTTTTTCCAAATTGCCACCTTTGCCTAAGTTGCCACCTTTCCATAAATCTCACCCAATTTTTGGACACCCATTGCCATTCCCTCCTAAGGTCTTCCCTCCAAAAGTTCCAATCTTCAAGAAGCCTTTTCCTCCACCAGTGCCAATCTACAAGAAGCCAGTCCCTCCACCAGTACCAGTCTACAAGAAGCCTCTCCCTCCCCCCGTACCAGTCTACAAGAAGCCTCTCCCTCCCCCCGTCCCAGTCTACAAGAAACCTAACCCTCCACCCACCCCAGTATACAAGAAACCTAACCCTCCACCAGTCCCAGTATACAAGAAACCTTGCCCTCCACCAACACCAATCTACAAGAAACCTCTCCCTCCACCCGTCCCAGTCTATAAGAAGCCTCTTCCACCACCAGTTCCAGTATACAAGAAGCCATTTCCCCCACCAGTCCCCATATACAAGAAGCCGCTTCCACCACCAGTCCCAATATACATAAAGCCACTTCCACCACCAGTCCCAATATACACAAAGCCACTTCCACCACCAGTTCCAGTATACAAGAAGCCATTTCCCCCACCAGTCCCCATATACATAAAGCCACTTCCACCACCAGTCCCAATATACACAAAGCCACTTCCACCACCCATCCCATTCTACAAGCCAAAGCCACACCCATTCAAGCCTCTCCCTCCATTGCCAAAGATTCCTCATCCATTCTTTAAGAAACCACCACTCCCGCCACTCCACCCAAAATATTATTTCCCTCACCCAAAGCCCAAGCTTCCTCATCCATTCTTGAAGAAACCACCACTCCCGCCACTCCACCCAAAATATTATTTCCCTCACCCAAAGCCCAAGCTTCCTCATCCATTCTTTAAGAAACCACCACTCCCGCCACTCCACCCAAAATATTACTTCCCTCACCCAAAGCCCAAGCTTCCTCCCTTTTCCAAATCAGCCCAATTTGAGCAGCACCACCAGCAACCCTTGTCAATGGGGCTGAAACACTTCACCCCCTCCCAGATCCACCAGATCCAGGCCCAATCCCAACCCCAAATCTTTTGGGATAATTACCACCAACAAGTTTCTCAGCCATCGTCTGGGATTAGTCGATCTGAGCGGGAGGTTCAAGCATGTGCAGGTTCATTACTGCAGGTGCAGGTGAGGGAGAGGATAAGGGGTGGAGAAAATGAGGGAGAAAGAGAGGAGAGAGGAAGGTTCATTTCTGCAAACCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pollen_Ole_e_I

Protein Analysis

635

Amino Acids

71.42

Weight (kDa)

9.99

Isoelectric Point (pI)

56.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pollen_Ole_e_1 PF01190 95 - 179 6.1e-12 Pollen protein Ole e 1 like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010868)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G21140 AT4G38770
fragaria_vesca FvH4_2g01970
malus_domestica MD05G1116400.v1.1 MD10G1118600.v1.1
prunus_persica Prupe.8G160900_v2.0.a1
pyrus_communis pycom05g11060 pycom10g10270
rosa_chinensis RchiOBHm_Chr6g0245161
rosa_laevigata RLG00000015320
rosa_multiflora Rmu_sc0001288.1_g000002 Rmu_sc0015012.1_g000001 Rmu_ssc0000087.1_g000001
rosa_roxburghii Rroxscaffold_7G00215400
rosa_rugosa Rorug05G0512400
rosa_samantha Rh6AG027500 Rh6BG023600 Rh6CG022000 Rh6DG022100
rosa_wichuraiana Rw6G002320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 1810, 1816
Acc36I ACCTGC 3 cut(s) 1796, 1810, 1816
AccB7I CCANNNNNTGG 2 cut(s) 740, 1766
AccBSI CCGCTC 1 cut(s) 1786
AccI GTMKAC 7 cut(s) 858, 891, 924, 957, 990, 1089, 1221
AciI CCGC 6 cut(s) 178, 1133, 1403, 1481, 1559, 1786
AclWI GGATC 2 cut(s) 1684, 1693
AcsI RAATTY 2 cut(s) 128, 623
AfaI GTAC 2 cut(s) 852, 885
AfiI CCNNNNNNNGG 8 cut(s) 383, 384, 604, 657, 740, 766, 1702, 1766
AgsI TTSAA 8 cut(s) 164, 394, 436, 568, 796, 1345, 1465, 1796
AjiI CACGTC 1 cut(s) 183
AjnI CCWGG 1 cut(s) 1701
AleI CACNNNNGTG 1 cut(s) 185
AloI GAACNNNNNNTCC 2 cut(s) 156, 188
AluBI AGCT 6 cut(s) 255, 415, 518, 1447, 1525, 1603
AluI AGCT 6 cut(s) 255, 415, 518, 1447, 1525, 1603
Alw21I GWGCWC 2 cut(s) 316, 417
Alw26I GTCTC 1 cut(s) 445
AlwI GGATC 2 cut(s) 1684, 1693
AoxI GGCC 3 cut(s) 541, 659, 1704
ApeKI GCWGC 3 cut(s) 518, 530, 1636
ApoI RAATTY 2 cut(s) 128, 623
Asp700I GAANNNNTTC 2 cut(s) 215, 1673
AspA2I CCTAGG 1 cut(s) 97
AspS9I GGNCC 4 cut(s) 48, 93, 102, 1705
AsuHPI GGTGA 7 cut(s) 621, 722, 1424, 1502, 1580, 1669, 1840
AvaII GGWCC 3 cut(s) 48, 93, 102
AvrII CCTAGG 1 cut(s) 97
AxyI CCTNAGG 1 cut(s) 765
BaeGI GKGCMC 1 cut(s) 390
BanII GRGCYC 1 cut(s) 417
BbsI GAAGAC 3 cut(s) 344, 556, 763
Bbv12I GWGCWC 2 cut(s) 316, 417
BbvI GCAGC 3 cut(s) 505, 517, 1648
BccI CCATC 3 cut(s) 578, 1319, 1768
BceAI ACGGC 2 cut(s) 135, 556
BciT130I CCWGG 1 cut(s) 1703
BcoDI GTCTC 1 cut(s) 445
BfaI CTAG 2 cut(s) 98, 333
BfmI CTRYAG 1 cut(s) 1817
BfuAI ACCTGC 3 cut(s) 1796, 1810, 1816
BisI GCNGC 4 cut(s) 519, 531, 1133, 1637
BlnI CCTAGG 1 cut(s) 97
BlpI GCTNAGC 1 cut(s) 267
BlsI GCNGC 4 cut(s) 520, 532, 1134, 1638
Bme1390I CCNGG 1 cut(s) 1703
Bme18I GGWCC 3 cut(s) 48, 93, 102
BmgBI CACGTC 1 cut(s) 183
BmgT120I GGNCC 4 cut(s) 48, 93, 102, 1705
BmiI GGNNCC 4 cut(s) 94, 95, 103, 104
BmrFI CCNGG 1 cut(s) 1703
BmrI ACTGGG 4 cut(s) 914, 947, 980, 1046
BmsI GCATC 2 cut(s) 521, 682
BmuI ACTGGG 4 cut(s) 914, 947, 980, 1046
BpiI GAAGAC 3 cut(s) 344, 556, 763
Bpu1102I GCTNAGC 1 cut(s) 267
BsaJI CCNNGG 3 cut(s) 97, 573, 598
BsaXI ACNNNNNCTCC 8 cut(s) 156, 186, 1383, 1413, 1461, 1491, 1539, 1569
Bsc4I CCNNNNNNNGG 8 cut(s) 383, 384, 604, 657, 740, 766, 1702, 1766
Bse21I CCTNAGG 1 cut(s) 765
Bse3DI GCAATG 2 cut(s) 749, 1358
BseBI CCWGG 1 cut(s) 1703
BseDI CCNNGG 3 cut(s) 97, 573, 598
BseGI GGATG 6 cut(s) 30, 673, 1311, 1375, 1453, 1531
BseLI CCNNNNNNNGG 8 cut(s) 383, 384, 604, 657, 740, 766, 1702, 1766
BseMI GCAATG 2 cut(s) 749, 1358
BseMII CTCAG 3 cut(s) 258, 1769, 1773
BseRI GAGGAG 1 cut(s) 1886
BseSI GKGCMC 1 cut(s) 390
BseXI GCAGC 3 cut(s) 505, 517, 1648
BsgI GTGCAG 2 cut(s) 1824, 1844
BshFI GGCC 3 cut(s) 543, 661, 1706
BsiHKAI GWGCWC 2 cut(s) 316, 417
BslI CCNNNNNNNGG 8 cut(s) 383, 384, 604, 657, 740, 766, 1702, 1766
BsmAI GTCTC 1 cut(s) 445
BsmI GAATGC 1 cut(s) 305
BsnI GGCC 3 cut(s) 543, 661, 1706
Bsp1286I GDGCHC 3 cut(s) 316, 390, 417
Bsp143I GATC 3 cut(s) 1689, 1698, 1778
Bsp1720I GCTNAGC 1 cut(s) 267
BspACI CCGC 6 cut(s) 178, 1133, 1403, 1481, 1559, 1786
BspANI GGCC 3 cut(s) 543, 661, 1706
BspCNI CTCAG 3 cut(s) 259, 1768, 1774
BspLI GGNNCC 4 cut(s) 94, 95, 103, 104
BspMAI CTGCAG 1 cut(s) 1821
BspMI ACCTGC 3 cut(s) 1796, 1810, 1816
BspPI GGATC 2 cut(s) 1684, 1693
BsrBI CCGCTC 1 cut(s) 1786
BsrDI GCAATG 2 cut(s) 749, 1358
BssECI CCNNGG 3 cut(s) 97, 573, 598
BssMI GATC 3 cut(s) 1689, 1698, 1778
BssNAI GTATAC 4 cut(s) 958, 991, 1090, 1222
BssT1I CCWWGG 3 cut(s) 97, 573, 598
Bst1107I GTATAC 4 cut(s) 958, 991, 1090, 1222
Bst2UI CCWGG 1 cut(s) 1703
Bst4CI ACNGT 3 cut(s) 48, 311, 509
Bst6I CTCTTC 1 cut(s) 1074
BstAPI GCANNNNNTGC 1 cut(s) 518
BstC8I GCNNGC 1 cut(s) 374
BstDEI CTNAG 5 cut(s) 267, 705, 765, 1755, 1782
BstF5I GGATG 6 cut(s) 30, 673, 1311, 1375, 1453, 1531
BstKTI GATC 3 cut(s) 1692, 1701, 1781
BstMAI GTCTC 1 cut(s) 445
BstMBI GATC 3 cut(s) 1689, 1698, 1778
BstMWI GCNNNNNNNGC 6 cut(s) 241, 518, 527, 700, 709, 1645
BstNI CCWGG 1 cut(s) 1703
BstNSI RCATGY 1 cut(s) 1803
BstSCI CCNGG 1 cut(s) 1701
BstSFI CTRYAG 1 cut(s) 1817
BstSLI GKGCMC 1 cut(s) 390
BstV1I GCAGC 3 cut(s) 505, 517, 1648
BstV2I GAAGAC 3 cut(s) 344, 556, 763
BstX2I RGATCY 2 cut(s) 1689, 1698
BstYI RGATCY 2 cut(s) 1689, 1698
BstZ17I GTATAC 4 cut(s) 958, 991, 1090, 1222
Bsu36I CCTNAGG 1 cut(s) 765
BsuRI GGCC 3 cut(s) 543, 661, 1706
BtrI CACGTC 1 cut(s) 183
BtsCI GGATG 6 cut(s) 30, 673, 1311, 1375, 1453, 1531
BtsIMutI CAGTG 3 cut(s) 303, 514, 822
BveI ACCTGC 3 cut(s) 1796, 1810, 1816
Cac8I GCNNGC 1 cut(s) 374
Cfr13I GGNCC 4 cut(s) 48, 93, 102, 1705
Csp6I GTAC 2 cut(s) 851, 884
CviAII CATG 4 cut(s) 114, 263, 536, 1800
CviQI GTAC 2 cut(s) 851, 884
DdeI CTNAG 5 cut(s) 267, 705, 765, 1755, 1782
DpnI GATC 3 cut(s) 1691, 1700, 1780
DpnII GATC 3 cut(s) 1689, 1698, 1778
Eam1104I CTCTTC 1 cut(s) 1074
EarI CTCTTC 1 cut(s) 1074
Ecl136II GAGCTC 1 cut(s) 415
Eco130I CCWWGG 3 cut(s) 97, 573, 598
Eco24I GRGCYC 1 cut(s) 417
Eco47I GGWCC 3 cut(s) 48, 93, 102
Eco53kI GAGCTC 1 cut(s) 415
Eco81I CCTNAGG 1 cut(s) 765
EcoICRI GAGCTC 1 cut(s) 415
EcoO109I RGGNCCY 2 cut(s) 93, 102
EcoRII CCWGG 1 cut(s) 1701
EcoT14I CCWWGG 3 cut(s) 97, 573, 598
EcoT38I GRGCYC 1 cut(s) 417
ErhI CCWWGG 3 cut(s) 97, 573, 598
FaeI CATG 4 cut(s) 117, 266, 539, 1803
FalI AAGNNNNNCTT 2 cut(s) 429, 461
FatI CATG 4 cut(s) 113, 262, 535, 1799
FauI CCCGC 5 cut(s) 185, 1410, 1488, 1566, 1779
FblI GTMKAC 7 cut(s) 858, 891, 924, 957, 990, 1089, 1221
Fnu4HI GCNGC 4 cut(s) 519, 531, 1133, 1637
FokI GGATG 6 cut(s) 37, 660, 1298, 1362, 1440, 1518
FriOI GRGCYC 1 cut(s) 417
Fsp4HI GCNGC 4 cut(s) 519, 531, 1133, 1637
FspBI CTAG 2 cut(s) 98, 333
GluI GCNGC 4 cut(s) 519, 531, 1133, 1637
HaeIII GGCC 3 cut(s) 543, 661, 1706
Hin1II CATG 4 cut(s) 117, 266, 539, 1803
HindIII AAGCTT 3 cut(s) 1445, 1523, 1601
HinfI GANTC 1 cut(s) 1369
HphI GGTGA 7 cut(s) 621, 722, 1424, 1502, 1580, 1669, 1840
Hpy166II GTNNAC 7 cut(s) 859, 892, 925, 958, 991, 1090, 1222
Hpy188I TCNGA 2 cut(s) 318, 1783
Hpy188III TCNNGA 3 cut(s) 161, 796, 1462
Hpy8I GTNNAC 7 cut(s) 859, 892, 925, 958, 991, 1090, 1222
HpyAV CCTTC 2 cut(s) 661, 1875
HpyCH4III ACNGT 3 cut(s) 48, 311, 509
HpyCH4IV ACGT 2 cut(s) 41, 182
HpyCH4V TGCA 9 cut(s) 39, 303, 372, 512, 642, 1805, 1819, 1825, 1895
HpyF10VI GCNNNNNNNGC 6 cut(s) 241, 518, 527, 700, 709, 1645
HpyF3I CTNAG 5 cut(s) 267, 705, 765, 1755, 1782
HpySE526I ACGT 2 cut(s) 41, 182
Hsp92II CATG 4 cut(s) 117, 266, 539, 1803
KflI GGGWCCC 2 cut(s) 93, 102
Kzo9I GATC 3 cut(s) 1689, 1698, 1778
LmnI GCTCC 1 cut(s) 412
Lsp1109I GCAGC 3 cut(s) 505, 517, 1648
LweI GCATC 2 cut(s) 521, 682
MaeI CTAG 2 cut(s) 98, 333
MaeII ACGT 2 cut(s) 41, 182
MaeIII GTNAC 3 cut(s) 42, 358, 634
MalI GATC 3 cut(s) 1691, 1700, 1780
MbiI CCGCTC 1 cut(s) 1786
MboI GATC 3 cut(s) 1689, 1698, 1778
MfeI CAATTG 2 cut(s) 276, 363
MflI RGATCY 2 cut(s) 1689, 1698
MhlI GDGCHC 3 cut(s) 316, 390, 417
MluCI AATT 8 cut(s) 128, 276, 363, 623, 689, 735, 1628, 1735
MmeI TCCRAC 1 cut(s) 274
MroXI GAANNNNTTC 2 cut(s) 215, 1673
MseI TTAA 4 cut(s) 126, 327, 1386, 1542
MslI CAYNNNNRTG 1 cut(s) 185
MspA1I CMGCKG 1 cut(s) 518
MspR9I CCNGG 1 cut(s) 1703
MunI CAATTG 2 cut(s) 276, 363
Mva1269I GAATGC 1 cut(s) 305
MvaI CCWGG 1 cut(s) 1703
MwoI GCNNNNNNNGC 6 cut(s) 241, 518, 527, 700, 709, 1645
NdeII GATC 3 cut(s) 1689, 1698, 1778
NlaIII CATG 4 cut(s) 117, 266, 539, 1803
NlaIV GGNNCC 4 cut(s) 94, 95, 103, 104
NmuCI GTSAC 1 cut(s) 634
NspI RCATGY 1 cut(s) 1803
OliI CACNNNNGTG 1 cut(s) 185
PaqCI CACCTGC 2 cut(s) 1810, 1816
PcsI WCGNNNNNNNCGW 1 cut(s) 38
PctI GAATGC 1 cut(s) 305
PdmI GAANNNNTTC 2 cut(s) 215, 1673
PfeI GAWTC 1 cut(s) 1369
PflMI CCANNNNNTGG 2 cut(s) 740, 1766
PkrI GCNGC 4 cut(s) 520, 532, 1134, 1638
PpuMI RGGWCCY 2 cut(s) 93, 102
Psp124BI GAGCTC 1 cut(s) 417
Psp5II RGGWCCY 2 cut(s) 93, 102
Psp6I CCWGG 1 cut(s) 1701
PspGI CCWGG 1 cut(s) 1701
PspN4I GGNNCC 4 cut(s) 94, 95, 103, 104
PspPI GGNCC 4 cut(s) 48, 93, 102, 1705
PspPPI RGGWCCY 2 cut(s) 93, 102
PstI CTGCAG 1 cut(s) 1821
PsuI RGATCY 2 cut(s) 1689, 1698
PvuII CAGCTG 1 cut(s) 518
RsaI GTAC 2 cut(s) 852, 885
RsaNI GTAC 2 cut(s) 851, 884
RseI CAYNNNNRTG 1 cut(s) 185
SacI GAGCTC 1 cut(s) 417
SaqAI TTAA 4 cut(s) 126, 327, 1386, 1542
SatI GCNGC 4 cut(s) 519, 531, 1133, 1637
Sau3AI GATC 3 cut(s) 1689, 1698, 1778
Sau96I GGNCC 4 cut(s) 48, 93, 102, 1705
ScrFI CCNGG 1 cut(s) 1703
SduI GDGCHC 3 cut(s) 316, 390, 417
SfaNI GCATC 2 cut(s) 521, 682
SfcI CTRYAG 1 cut(s) 1817
SinI GGWCC 3 cut(s) 48, 93, 102
SmiMI CAYNNNNRTG 1 cut(s) 185
Sse9I AATT 8 cut(s) 128, 276, 363, 623, 689, 735, 1628, 1735
SsiI CCGC 6 cut(s) 178, 1133, 1403, 1481, 1559, 1786
SspI AATATT 3 cut(s) 1421, 1499, 1577
SspMI CTAG 2 cut(s) 98, 333
SstI GAGCTC 1 cut(s) 417
StyD4I CCNGG 1 cut(s) 1701
StyI CCWWGG 3 cut(s) 97, 573, 598
TaaI ACNGT 3 cut(s) 48, 311, 509
TaiI ACGT 2 cut(s) 44, 185
TaqI TCGA 1 cut(s) 1777
TasI AATT 8 cut(s) 128, 276, 363, 623, 689, 735, 1628, 1735
TauI GCSGC 1 cut(s) 1135
TfiI GAWTC 1 cut(s) 1369
Tru1I TTAA 4 cut(s) 126, 327, 1386, 1542
Tru9I TTAA 4 cut(s) 126, 327, 1386, 1542
TscAI CASTG 3 cut(s) 310, 514, 822
TseFI GTSAC 1 cut(s) 634
TseI GCWGC 3 cut(s) 518, 530, 1636
Tsp45I GTSAC 1 cut(s) 634
TspDTI ATGAA 6 cut(s) 17, 41, 224, 435, 1800, 1876
TspRI CASTG 3 cut(s) 310, 514, 822
Van91I CCANNNNNTGG 2 cut(s) 740, 1766
VpaK11BI GGWCC 3 cut(s) 48, 93, 102
XapI RAATTY 2 cut(s) 128, 623
XceI RCATGY 1 cut(s) 1803
XmaJI CCTAGG 1 cut(s) 97
XmiI GTMKAC 7 cut(s) 858, 891, 924, 957, 990, 1089, 1221
XmnI GAANNNNTTC 2 cut(s) 215, 1673
XspI CTAG 2 cut(s) 98, 333
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.