Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0003713

Physical Location & Seq

Genomic Coordinates Reverse (-)

27839316 .. 27840297

Gene Structure 982 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGTGGCAAACGAAAACAAGAGAAAAATCTTGGCAGTCCAATGAGATTAAAGCTTTAGATATCACCACTCTCAAACTTCAACCATCGATCAAGCCTCAATTCTCTCTCTCAACCATGGCTGCTTCCACAATGGCTCTCTCCTCCCCAACCTTCGCCGGCAAAGCCGTGCAACTTTCCCCGGGAGCCACCGAGCTTTTCGGAAACGGAAGAGTTTCCATGAGGAAAACTGCTACCAAACAAGTTTCCTCTGGCAGCCCTTGGTACGGCCCTGACAGAGTCAAATACTTGGGCCCATTCTCCGGTGAGCCCCCAAGCTACCTCAAGGGCGAGTTCCCCGGTGACTACGGCTGGGACACCGCTGGACTCTCAGCCGACCCAGAGACCTTCGCCAAGAACCGTGAGCTTGAGGTGATCCACTCCAGATGGGCCATGCTCGGAGCTCTTGGATGCGTTTTCCCTGAGCTCTTGTCCCGCAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGAGCCCAGATCTTCAGCGAGGGCGGTCTCGACTACTTGGGAAACCCTAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTACACAAGTTGTGTTGATGGGAGCAGTTGAGGGATACAGAATCGCCGGCGGACCCCTCGGAGAGGTGACCGACCCCCTTTACCCCGGCGGAAGCTTCGACCCCTTGGGCCTTGCTGACGACCCAGAAGCCTTTGCCGAGCTCAAGGTGAAGGAGCTCAAGAATGGAAGGTTGGCCATGTTCTCCATGTTCGGATTCTTTGTCCAGGCCATCGTCACCGGAAAGGGACCATTGGAGAATCTTGCCGACCACCTTGCAGACCCAGTTGCCAACAATGCCTGGAACTACGCCACAAACTTTGTACCCGGAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009765 GO:0009768 GO:0009941 GO:0009987 GO:0010287 GO:0015979 GO:0016020 GO:0016168 GO:0019684 GO:0031409 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046906 GO:0048037 GO:0050896 GO:0055035 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00196 ko01100 map00196 map01100

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

304

Amino Acids

32.65

Weight (kDa)

5.99

Isoelectric Point (pI)

24.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chloroa_b-bind	PF00504	103 - 270	1.3e-50	Chlorophyll A-B binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003713)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29910 AT1G29920 AT1G29930 AT2G34420 AT2G34430
fragaria_vesca	FvH4_3g06120
malus_domestica	MD05G1289200.v1.1 MD05G1289300.v1.1 MD10G1265300.v1.1 MD10G1265400.v1.1
prunus_persica	Prupe.4G076200_v2.0.a1 Prupe.4G076300_v2.0.a1
pyrus_communis	pycom05g26650 pycom05g26660 pycom10g22120 pycom10g22130
rosa_chinensis	RchiOBHm_Chr5g0013251 RchiOBHm_Chr5g0013261
rosa_laevigata	RLG00000032001 RLG00000032002
rosa_multiflora	Rmu_sc0004521.1_g000018 Rmu_sc0004521.1_g000019
rosa_roxburghii	Rroxscaffold_1G00063250 Rroxscaffold_1G00063260
rosa_rugosa	Rorug05G0008500 Rorug05G0008600
rosa_samantha	Rh5AG103100 Rh5AG103200 Rh5BG099900 Rh5BG100000 Rh5DG098700 Rh5DG098800
rosa_wichuraiana	Rw5G009000 Rw5G009010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	357, 472, 537, 648, 687
AclWI	GGATC	1 cut(s)	406
AcoI	YGGCCR	2 cut(s)	588, 771
AcuI	CTGAAG	1 cut(s)	511
AfaI	GTAC	2 cut(s)	263, 900
AfiI	CCNNNNNNNGG	4 cut(s)	263, 299, 565, 661
AgsI	TTSAA	2 cut(s)	80, 508
AjnI	CCWGG	2 cut(s)	801, 875
AjuI	GAANNNNNNNTTGG	2 cut(s)	752, 784
Alw21I	GWGCWC	4 cut(s)	442, 465, 741, 756
Alw26I	GTCTC	2 cut(s)	374, 545
AlwI	GGATC	1 cut(s)	406
Ama87I	CYCGRG	1 cut(s)	178
AoxI	GGCC	8 cut(s)	265, 289, 426, 510, 588, 706, 771, 804
ApaI	GGGCCC	1 cut(s)	293
ApeKI	GCWGC	2 cut(s)	119, 252
Asp700I	GAANNNNTTC	1 cut(s)	211
AspS9I	GGNCC	8 cut(s)	266, 289, 290, 426, 568, 650, 706, 824
AsuC2I	CCSGG	5 cut(s)	179, 180, 336, 684, 903
AsuHPI	GGTGA	8 cut(s)	55, 314, 350, 421, 503, 676, 757, 805
AvaI	CYCGRG	1 cut(s)	178
AvaII	GGWCC	3 cut(s)	568, 650, 824
BaeGI	GKGCMC	1 cut(s)	293
BalI	TGGCCA	2 cut(s)	590, 773
BanII	GRGCYC	7 cut(s)	293, 309, 442, 465, 520, 741, 756
Bbv12I	GWGCWC	4 cut(s)	442, 465, 741, 756
BbvI	GCAGC	2 cut(s)	106, 264
BccI	CCATC	5 cut(s)	91, 417, 599, 610, 815
BceAI	ACGGC	3 cut(s)	149, 280, 361
BcgI	CGANNNNNNTGC	2 cut(s)	833, 867
BciT130I	CCWGG	2 cut(s)	803, 877
BciVI	GTATCC	1 cut(s)	626
BcnI	CCSGG	5 cut(s)	179, 180, 336, 684, 903
BcoDI	GTCTC	2 cut(s)	374, 545
BfaI	CTAG	1 cut(s)	561
BfuI	GTATCC	1 cut(s)	626
BglI	GCCNNNNNGGC	1 cut(s)	596
BglII	AGATCT	1 cut(s)	522
BisI	GCNGC	2 cut(s)	120, 253
BlsI	GCNGC	2 cut(s)	121, 254
Bme1390I	CCNGG	7 cut(s)	179, 180, 336, 684, 803, 877, 903
Bme18I	GGWCC	3 cut(s)	568, 650, 824
BmeT110I	CYCGRG	1 cut(s)	178
BmgT120I	GGNCC	8 cut(s)	266, 289, 290, 426, 568, 650, 706, 824
BmiI	GGNNCC	5 cut(s)	184, 291, 517, 652, 825
BmrFI	CCNGG	7 cut(s)	179, 180, 336, 684, 803, 877, 903
BmrI	ACTGGG	1 cut(s)	854
BmsI	GCATC	2 cut(s)	437, 591
BmuI	ACTGGG	1 cut(s)	854
BpmI	CTGGAG	1 cut(s)	403
Bpu10I	CCTNAGC	1 cut(s)	459
BpuEI	CTTGAG	4 cut(s)	305, 425, 725, 740
BpuMI	CCSGG	5 cut(s)	179, 180, 336, 684, 903
Bsa29I	ATCGAT	1 cut(s)	86
BsaI	GGTCTC	2 cut(s)	374, 545
BsaJI	CCNNGG	8 cut(s)	114, 177, 178, 257, 334, 655, 682, 702
BsaWI	WCCGGW	2 cut(s)	299, 815
Bsc4I	CCNNNNNNNGG	4 cut(s)	263, 299, 565, 661
Bse118I	RCCGGY	2 cut(s)	155, 644
Bse1I	ACTGG	1 cut(s)	860
BseBI	CCWGG	2 cut(s)	803, 877
BseCI	ATCGAT	1 cut(s)	86
BseDI	CCNNGG	8 cut(s)	114, 177, 178, 257, 334, 655, 682, 702
BseGI	GGATG	1 cut(s)	452
BseLI	CCNNNNNNNGG	4 cut(s)	263, 299, 565, 661
BseMII	CTCAG	2 cut(s)	381, 450
BseNI	ACTGG	1 cut(s)	860
BseRI	GAGGAG	1 cut(s)	130
BseSI	GKGCMC	1 cut(s)	293
BseXI	GCAGC	2 cut(s)	106, 264
BseYI	CCCAGC	1 cut(s)	348
BshFI	GGCC	8 cut(s)	267, 291, 428, 512, 590, 708, 773, 806
BshVI	ATCGAT	1 cut(s)	86
BsiHKAI	GWGCWC	4 cut(s)	442, 465, 741, 756
BsiHKCI	CYCGRG	1 cut(s)	178
BsiSI	CCGG	9 cut(s)	156, 179, 300, 336, 513, 645, 684, 816, 903
BslFI	GGGAC	3 cut(s)	365, 454, 837
BslI	CCNNNNNNNGG	4 cut(s)	263, 299, 565, 661
BsmAI	GTCTC	2 cut(s)	374, 545
BsmFI	GGGAC	3 cut(s)	365, 454, 837
BsnI	GGCC	8 cut(s)	267, 291, 428, 512, 590, 708, 773, 806
Bso31I	GGTCTC	2 cut(s)	374, 545
BsoBI	CYCGRG	1 cut(s)	178
Bsp120I	GGGCCC	1 cut(s)	289
Bsp1286I	GDGCHC	7 cut(s)	293, 309, 442, 465, 520, 741, 756
Bsp143I	GATC	3 cut(s)	87, 411, 522
Bsp19I	CCATGG	1 cut(s)	114
BspACI	CCGC	5 cut(s)	357, 472, 537, 648, 687
BspANI	GGCC	8 cut(s)	267, 291, 428, 512, 590, 708, 773, 806
BspCNI	CTCAG	2 cut(s)	380, 451
BspDI	ATCGAT	1 cut(s)	86
BspLI	GGNNCC	5 cut(s)	184, 291, 517, 652, 825
BspPI	GGATC	1 cut(s)	406
BspTNI	GGTCTC	2 cut(s)	374, 545
BsrFI	RCCGGY	2 cut(s)	155, 644
BsrI	ACTGG	1 cut(s)	860
BssAI	RCCGGY	2 cut(s)	155, 644
BssECI	CCNNGG	8 cut(s)	114, 177, 178, 257, 334, 655, 682, 702
BssMI	GATC	3 cut(s)	87, 411, 522
BssT1I	CCWWGG	3 cut(s)	114, 257, 702
Bst2UI	CCWGG	2 cut(s)	803, 877
Bst4CI	ACNGT	2 cut(s)	398, 479
Bst6I	CTCTTC	1 cut(s)	202
BstC8I	GCNNGC	2 cut(s)	157, 646
BstDEI	CTNAG	2 cut(s)	367, 459
BstDSI	CCRYGG	1 cut(s)	114
BstEII	GGTNACC	1 cut(s)	664
BstENI	CCTNNNNNAGG	1 cut(s)	659
BstF5I	GGATG	1 cut(s)	452
BstKTI	GATC	3 cut(s)	90, 414, 525
BstMAI	GTCTC	2 cut(s)	374, 545
BstMBI	GATC	3 cut(s)	87, 411, 522
BstMWI	GCNNNNNNNGC	3 cut(s)	161, 596, 872
BstNI	CCWGG	2 cut(s)	803, 877
BstPI	GGTNACC	1 cut(s)	664
BstSCI	CCNGG	7 cut(s)	177, 178, 334, 682, 801, 875, 901
BstSLI	GKGCMC	1 cut(s)	293
BstV1I	GCAGC	2 cut(s)	106, 264
BstX2I	RGATCY	1 cut(s)	522
BstYI	RGATCY	1 cut(s)	522
Bsu15I	ATCGAT	1 cut(s)	86
BsuI	GTATCC	1 cut(s)	626
BsuRI	GGCC	8 cut(s)	267, 291, 428, 512, 590, 708, 773, 806
BsuTUI	ATCGAT	1 cut(s)	86
BtgI	CCRYGG	1 cut(s)	114
BtsCI	GGATG	1 cut(s)	452
Cac8I	GCNNGC	2 cut(s)	157, 646
Cfr10I	RCCGGY	2 cut(s)	155, 644
Cfr13I	GGNCC	8 cut(s)	266, 289, 290, 426, 568, 650, 706, 824
Cfr9I	CCCGGG	1 cut(s)	178
ClaI	ATCGAT	1 cut(s)	86
Csp6I	GTAC	2 cut(s)	262, 899
CspCI	CAANNNNNGTGG	2 cut(s)	877, 912
CviAII	CATG	6 cut(s)	115, 217, 430, 572, 775, 784
CviQI	GTAC	2 cut(s)	262, 899
DdeI	CTNAG	2 cut(s)	367, 459
DpnI	GATC	3 cut(s)	89, 413, 524
DpnII	GATC	3 cut(s)	87, 411, 522
EaeI	YGGCCR	2 cut(s)	588, 771
Eam1104I	CTCTTC	1 cut(s)	202
EarI	CTCTTC	1 cut(s)	202
EciI	GGCGGA	2 cut(s)	663, 702
Ecl136II	GAGCTC	4 cut(s)	440, 463, 739, 754
Eco130I	CCWWGG	3 cut(s)	114, 257, 702
Eco24I	GRGCYC	7 cut(s)	293, 309, 442, 465, 520, 741, 756
Eco31I	GGTCTC	2 cut(s)	374, 545
Eco32I	GATATC	1 cut(s)	61
Eco47I	GGWCC	3 cut(s)	568, 650, 824
Eco53kI	GAGCTC	4 cut(s)	440, 463, 739, 754
Eco57I	CTGAAG	1 cut(s)	511
Eco88I	CYCGRG	1 cut(s)	178
Eco91I	GGTNACC	1 cut(s)	664
EcoICRI	GAGCTC	4 cut(s)	440, 463, 739, 754
EcoNI	CCTNNNNNAGG	1 cut(s)	659
EcoO65I	GGTNACC	1 cut(s)	664
EcoRII	CCWGG	2 cut(s)	801, 875
EcoRV	GATATC	1 cut(s)	61
EcoT14I	CCWWGG	3 cut(s)	114, 257, 702
EcoT38I	GRGCYC	7 cut(s)	293, 309, 442, 465, 520, 741, 756
ErhI	CCWWGG	3 cut(s)	114, 257, 702
FaeI	CATG	6 cut(s)	118, 220, 433, 575, 778, 787
FaiI	YATR	6 cut(s)	116, 218, 431, 573, 776, 785
FaqI	GGGAC	3 cut(s)	365, 454, 837
FatI	CATG	6 cut(s)	114, 216, 429, 571, 774, 783
FauI	CCCGC	1 cut(s)	479
Fnu4HI	GCNGC	2 cut(s)	120, 253
FokI	GGATG	1 cut(s)	459
FriOI	GRGCYC	7 cut(s)	293, 309, 442, 465, 520, 741, 756
Fsp4HI	GCNGC	2 cut(s)	120, 253
FspBI	CTAG	1 cut(s)	561
GluI	GCNGC	2 cut(s)	120, 253
GsaI	CCCAGC	1 cut(s)	352
GsuI	CTGGAG	1 cut(s)	403
HaeIII	GGCC	8 cut(s)	267, 291, 428, 512, 590, 708, 773, 806
HapII	CCGG	9 cut(s)	156, 179, 300, 336, 513, 645, 684, 816, 903
Hin1II	CATG	6 cut(s)	118, 220, 433, 575, 778, 787
HindIII	AAGCTT	2 cut(s)	51, 691
HinfI	GANTC	5 cut(s)	276, 363, 639, 792, 835
HpaII	CCGG	9 cut(s)	156, 179, 300, 336, 513, 645, 684, 816, 903
HphI	GGTGA	8 cut(s)	55, 314, 350, 421, 503, 676, 757, 805
Hpy188I	TCNGA	4 cut(s)	200, 437, 659, 791
Hpy188III	TCNNGA	3 cut(s)	420, 542, 757
HpyAV	CCTTC	4 cut(s)	160, 394, 742, 759
HpyCH4III	ACNGT	2 cut(s)	398, 479
HpyCH4V	TGCA	3 cut(s)	169, 575, 854
HpyF10VI	GCNNNNNNNGC	3 cut(s)	161, 596, 872
HpyF3I	CTNAG	2 cut(s)	367, 459
Hsp92II	CATG	6 cut(s)	118, 220, 433, 575, 778, 787
KroI	GCCGGC	2 cut(s)	155, 644
KroNI	GCCGGC	2 cut(s)	157, 646
Kzo9I	GATC	3 cut(s)	87, 411, 522
LmnI	GCTCC	5 cut(s)	182, 437, 515, 620, 751
Lsp1109I	GCAGC	2 cut(s)	106, 264
LweI	GCATC	2 cut(s)	437, 591
MaeI	CTAG	1 cut(s)	561
MaeIII	GTNAC	3 cut(s)	338, 664, 811
MalI	GATC	3 cut(s)	89, 413, 524
MboI	GATC	3 cut(s)	87, 411, 522
MboII	GAAGA	2 cut(s)	219, 517
MflI	RGATCY	1 cut(s)	522
MhlI	GDGCHC	7 cut(s)	293, 309, 442, 465, 520, 741, 756
MlsI	TGGCCA	2 cut(s)	590, 773
MluCI	AATT	1 cut(s)	98
MluNI	TGGCCA	2 cut(s)	590, 773
MlyI	GAGTC	2 cut(s)	285, 357
Mox20I	TGGCCA	2 cut(s)	590, 773
MreI	CGCCGGCG	1 cut(s)	644
MroNI	GCCGGC	2 cut(s)	155, 644
MroXI	GAANNNNTTC	1 cut(s)	211
MscI	TGGCCA	2 cut(s)	590, 773
MseI	TTAA	1 cut(s)	48
Msp20I	TGGCCA	2 cut(s)	590, 773
MspA1I	CMGCKG	1 cut(s)	359
MspI	CCGG	9 cut(s)	156, 179, 300, 336, 513, 645, 684, 816, 903
MspR9I	CCNGG	7 cut(s)	179, 180, 336, 684, 803, 877, 903
MvaI	CCWGG	2 cut(s)	803, 877
MwoI	GCNNNNNNNGC	3 cut(s)	161, 596, 872
NaeI	GCCGGC	2 cut(s)	157, 646
NciI	CCSGG	5 cut(s)	179, 180, 336, 684, 903
NcoI	CCATGG	1 cut(s)	114
NdeII	GATC	3 cut(s)	87, 411, 522
NgoMIV	GCCGGC	2 cut(s)	155, 644
NlaIII	CATG	6 cut(s)	118, 220, 433, 575, 778, 787
NlaIV	GGNNCC	5 cut(s)	184, 291, 517, 652, 825
NmeAIII	GCCGAG	1 cut(s)	760
NmuCI	GTSAC	3 cut(s)	338, 664, 811
PdiI	GCCGGC	2 cut(s)	157, 646
PdmI	GAANNNNTTC	1 cut(s)	211
PfeI	GAWTC	3 cut(s)	639, 792, 835
PflFI	GACNNNGTC	1 cut(s)	275
PkrI	GCNGC	2 cut(s)	121, 254
PleI	GAGTC	2 cut(s)	284, 357
PpsI	GAGTC	2 cut(s)	284, 357
Psp124BI	GAGCTC	4 cut(s)	442, 465, 741, 756
Psp6I	CCWGG	2 cut(s)	801, 875
PspEI	GGTNACC	1 cut(s)	664
PspFI	CCCAGC	1 cut(s)	348
PspGI	CCWGG	2 cut(s)	801, 875
PspN4I	GGNNCC	5 cut(s)	184, 291, 517, 652, 825
PspOMI	GGGCCC	1 cut(s)	289
PspPI	GGNCC	8 cut(s)	266, 289, 290, 426, 568, 650, 706, 824
PsuI	RGATCY	1 cut(s)	522
PsyI	GACNNNGTC	1 cut(s)	275
RsaI	GTAC	2 cut(s)	263, 900
RsaNI	GTAC	2 cut(s)	262, 899
SacI	GAGCTC	4 cut(s)	442, 465, 741, 756
SaqAI	TTAA	1 cut(s)	48
SatI	GCNGC	2 cut(s)	120, 253
Sau3AI	GATC	3 cut(s)	87, 411, 522
Sau96I	GGNCC	8 cut(s)	266, 289, 290, 426, 568, 650, 706, 824
SchI	GAGTC	2 cut(s)	285, 357
ScrFI	CCNGG	7 cut(s)	179, 180, 336, 684, 803, 877, 903
SduI	GDGCHC	7 cut(s)	293, 309, 442, 465, 520, 741, 756
SfaNI	GCATC	2 cut(s)	437, 591
SgrAI	CRCCGGYG	1 cut(s)	644
SinI	GGWCC	3 cut(s)	568, 650, 824
SmaI	CCCGGG	1 cut(s)	180
SmlI	CTYRAG	4 cut(s)	320, 404, 740, 755
SmoI	CTYRAG	4 cut(s)	320, 404, 740, 755
Sse9I	AATT	1 cut(s)	98
SsiI	CCGC	5 cut(s)	357, 472, 537, 648, 687
SspMI	CTAG	1 cut(s)	561
SstI	GAGCTC	4 cut(s)	442, 465, 741, 756
StyD4I	CCNGG	7 cut(s)	177, 178, 334, 682, 801, 875, 901
StyI	CCWWGG	3 cut(s)	114, 257, 702
TaaI	ACNGT	2 cut(s)	398, 479
TaqI	TCGA	3 cut(s)	86, 543, 696
TaqII	GACCGA	1 cut(s)	683
TasI	AATT	1 cut(s)	98
TfiI	GAWTC	3 cut(s)	639, 792, 835
Tru1I	TTAA	1 cut(s)	48
Tru9I	TTAA	1 cut(s)	48
TseFI	GTSAC	3 cut(s)	338, 664, 811
TseI	GCWGC	2 cut(s)	119, 252
Tsp45I	GTSAC	3 cut(s)	338, 664, 811
TspGWI	ACGGA	1 cut(s)	219
TspMI	CCCGGG	1 cut(s)	178
Tth111I	GACNNNGTC	1 cut(s)	275
VpaK11BI	GGWCC	3 cut(s)	568, 650, 824
XagI	CCTNNNNNAGG	1 cut(s)	659
XmaI	CCCGGG	1 cut(s)	178
XmnI	GAANNNNTTC	1 cut(s)	211
XspI	CTAG	1 cut(s)	561

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.