pycom06g00130

PLATZ transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0009294
Physical Location & Seq
Reverse (-)
163747 .. 165057
1311 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 762 bp
ATGCAGGTGAGTTCAATTGTACCGATAGGGCGAATTGGGAGGGACGAAGATGATTCGATTTGTCCGGCGTGGTTAAAACCAATGCTGAGAGCACGCTACTTCGTCCATTGTGAGATTCACGGCGATTCCAACAAGAGTGAATGCAACATGTTCTGCTTGGATTGCATGGGAGATGCTATCTGCCCTTACTGTTTGATCCATCACAAAGATCATCGCGTTGTCCAGATAAGACGGTCGTCCTACCATGATGTGGTGAGAGTGAATGAGATTCAGAAGTACATAGACATATCGTGCGTGCAGACGTACATCATCAACAGCGCAAAGATTGTGTTTTTGAATGAGAGGCCGCAGCCAAGGCCCGGAAAGGGAGTCACCAACACTTGTGAGATTTGCTGCAGAAGCCTCCTCGACTCCTTTAGGTTCTGCTCTTTGGGTTGCAAGCTTGGAGGAATAATGCGGGGTGACCGAGAGCTCACATTTGCAGTGATGAGGACAAAGCACGGCAGGGATGGTTTCTATGGCGGGTCAGAATCAGATGAATCAACAACTCCAAAGAAGATAACGAAGACAATGCATATGTTCAACCGTCTCATGAATGGAAATGCACTTAATTACGAGCGTGGGAGTCGTGGGGGGGAGAGGACTACCTCAAGTTCGGGTGATGAGGAGGGCACTGCCAATCTTTCTCCATCCACTTCTCCCCTTTACAACCACCACAATGCCAGAAGACGTAAGGGTATACCTCATCGCGCACCCTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PLATZ

Protein Analysis

254

Amino Acids

28.61

Weight (kDa)

8.97

Isoelectric Point (pI)

50.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PLATZ PF04640 77 - 148 2e-30 PLATZ transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 250
AccI GTMKAC 1 cut(s) 739
AccII CGCG 2 cut(s) 216, 750
AciI CCGC 3 cut(s) 347, 457, 522
AclWI GGATC 1 cut(s) 190
AfaI GTAC 3 cut(s) 21, 278, 305
AfiI CCNNNNNNNGG 3 cut(s) 250, 359, 365
AflIII ACRYGT 1 cut(s) 147
AgsI TTSAA 3 cut(s) 15, 337, 583
AluBI AGCT 2 cut(s) 442, 472
AluI AGCT 2 cut(s) 442, 472
Alw21I GWGCWC 2 cut(s) 94, 474
Alw26I GTCTC 1 cut(s) 593
AlwI GGATC 1 cut(s) 190
AoxI GGCC 2 cut(s) 344, 356
ApeKI GCWGC 2 cut(s) 349, 393
AspLEI GCGC 2 cut(s) 320, 752
AspS9I GGNCC 1 cut(s) 357
AsuC2I CCSGG 1 cut(s) 360
AsuHPI GGTGA 5 cut(s) 19, 265, 364, 473, 671
BaeGI GKGCMC 1 cut(s) 674
BanII GRGCYC 1 cut(s) 474
BbsI GAAGAC 2 cut(s) 572, 733
Bbv12I GWGCWC 2 cut(s) 94, 474
BbvI GCAGC 2 cut(s) 361, 380
BccI CCATC 3 cut(s) 207, 503, 697
BceAI ACGGC 2 cut(s) 136, 517
BcgI CGANNNNNNTGC 2 cut(s) 553, 587
BcnI CCSGG 1 cut(s) 360
BcoDI GTCTC 1 cut(s) 593
BfmI CTRYAG 1 cut(s) 394
BisI GCNGC 3 cut(s) 347, 350, 394
BlsI GCNGC 3 cut(s) 348, 351, 395
Bme1390I CCNGG 1 cut(s) 360
BmgT120I GGNCC 1 cut(s) 357
BmrFI CCNGG 1 cut(s) 360
BmsI GCATC 1 cut(s) 163
BoxI GACNNNNGTC 1 cut(s) 235
BpiI GAAGAC 2 cut(s) 572, 733
BpuEI CTTGAG 1 cut(s) 634
BpuMI CCSGG 1 cut(s) 360
BsaJI CCNNGG 1 cut(s) 353
Bsc4I CCNNNNNNNGG 3 cut(s) 250, 359, 365
BseDI CCNNGG 1 cut(s) 353
BseGI GGATG 2 cut(s) 514, 689
BseLI CCNNNNNNNGG 3 cut(s) 250, 359, 365
BseMII CTCAG 1 cut(s) 77
BseRI GAGGAG 2 cut(s) 395, 680
BseSI GKGCMC 1 cut(s) 674
BseXI GCAGC 2 cut(s) 361, 380
BsgI GTGCAG 1 cut(s) 317
Bsh1236I CGCG 2 cut(s) 216, 750
Bsh1285I CGRYCG 1 cut(s) 236
BshFI GGCC 2 cut(s) 346, 358
BsiEI CGRYCG 1 cut(s) 236
BsiHKAI GWGCWC 2 cut(s) 94, 474
BsiSI CCGG 2 cut(s) 65, 360
BslFI GGGAC 1 cut(s) 56
BslI CCNNNNNNNGG 3 cut(s) 250, 359, 365
BsmAI GTCTC 1 cut(s) 593
BsmBI CGTCTC 1 cut(s) 593
BsmFI GGGAC 1 cut(s) 56
BsmI GAATGC 1 cut(s) 146
BsnI GGCC 2 cut(s) 346, 358
Bsp1286I GDGCHC 3 cut(s) 94, 474, 674
Bsp143I GATC 2 cut(s) 195, 208
BspACI CCGC 3 cut(s) 347, 457, 522
BspANI GGCC 2 cut(s) 346, 358
BspCNI CTCAG 1 cut(s) 78
BspFNI CGCG 2 cut(s) 216, 750
BspHI TCATGA 1 cut(s) 591
BspMAI CTGCAG 1 cut(s) 398
BspPI GGATC 1 cut(s) 190
BssECI CCNNGG 1 cut(s) 353
BssMI GATC 2 cut(s) 195, 208
BssNAI GTATAC 1 cut(s) 740
BssT1I CCWWGG 1 cut(s) 353
Bst1107I GTATAC 1 cut(s) 740
Bst4CI ACNGT 3 cut(s) 191, 234, 587
BstC8I GCNNGC 3 cut(s) 94, 296, 440
BstDEI CTNAG 1 cut(s) 86
BstEII GGTNACC 1 cut(s) 461
BstF5I GGATG 2 cut(s) 514, 689
BstFNI CGCG 2 cut(s) 216, 750
BstHHI GCGC 2 cut(s) 320, 752
BstKTI GATC 2 cut(s) 198, 211
BstMAI GTCTC 1 cut(s) 593
BstMBI GATC 2 cut(s) 195, 208
BstMCI CGRYCG 1 cut(s) 236
BstMWI GCNNNNNNNGC 3 cut(s) 162, 355, 399
BstNSI RCATGY 1 cut(s) 151
BstPAI GACNNNNGTC 1 cut(s) 235
BstPI GGTNACC 1 cut(s) 461
BstSCI CCNGG 1 cut(s) 358
BstSFI CTRYAG 1 cut(s) 394
BstSLI GKGCMC 1 cut(s) 674
BstUI CGCG 2 cut(s) 216, 750
BstV1I GCAGC 2 cut(s) 361, 380
BstV2I GAAGAC 2 cut(s) 572, 733
BstZ17I GTATAC 1 cut(s) 740
BsuRI GGCC 2 cut(s) 346, 358
BtgZI GCGATG 2 cut(s) 197, 731
BtsCI GGATG 2 cut(s) 514, 689
BtsI GCAGTG 2 cut(s) 489, 672
BtsIMutI CAGTG 2 cut(s) 489, 672
Cac8I GCNNGC 3 cut(s) 94, 296, 440
CciI TCATGA 1 cut(s) 591
CfoI GCGC 2 cut(s) 320, 752
Cfr13I GGNCC 1 cut(s) 357
Csp6I GTAC 3 cut(s) 20, 277, 304
CviAII CATG 4 cut(s) 148, 166, 245, 592
CviJI RGCY 6 cut(s) 346, 352, 358, 402, 442, 472
CviKI_1 RGCY 6 cut(s) 346, 352, 358, 402, 442, 472
CviQI GTAC 3 cut(s) 20, 277, 304
DdeI CTNAG 1 cut(s) 86
DpnI GATC 2 cut(s) 197, 210
DpnII GATC 2 cut(s) 195, 208
Ecl136II GAGCTC 1 cut(s) 472
Eco130I CCWWGG 1 cut(s) 353
Eco24I GRGCYC 1 cut(s) 474
Eco53kI GAGCTC 1 cut(s) 472
Eco91I GGTNACC 1 cut(s) 461
EcoICRI GAGCTC 1 cut(s) 472
EcoO65I GGTNACC 1 cut(s) 461
EcoT14I CCWWGG 1 cut(s) 353
EcoT22I ATGCAT 1 cut(s) 576
EcoT38I GRGCYC 1 cut(s) 474
ErhI CCWWGG 1 cut(s) 353
Esp3I CGTCTC 1 cut(s) 593
FaeI CATG 4 cut(s) 151, 169, 248, 595
FaqI GGGAC 1 cut(s) 56
FatI CATG 4 cut(s) 147, 165, 244, 591
FauI CCCGC 2 cut(s) 450, 515
FauNDI CATATG 1 cut(s) 576
FblI GTMKAC 1 cut(s) 739
Fnu4HI GCNGC 3 cut(s) 347, 350, 394
FokI GGATG 2 cut(s) 521, 676
FriOI GRGCYC 1 cut(s) 474
Fsp4HI GCNGC 3 cut(s) 347, 350, 394
GlaI GCGC 2 cut(s) 319, 751
GluI GCNGC 3 cut(s) 347, 350, 394
HaeIII GGCC 2 cut(s) 346, 358
HapII CCGG 2 cut(s) 65, 360
HhaI GCGC 2 cut(s) 320, 752
Hin1II CATG 4 cut(s) 151, 169, 248, 595
Hin6I GCGC 2 cut(s) 318, 750
HinP1I GCGC 2 cut(s) 318, 750
HindIII AAGCTT 1 cut(s) 440
HinfI GANTC 9 cut(s) 53, 115, 125, 268, 369, 410, 530, 539, 625
HpaII CCGG 2 cut(s) 65, 360
HphI GGTGA 5 cut(s) 19, 265, 364, 473, 671
Hpy166II GTNNAC 1 cut(s) 740
Hpy188I TCNGA 3 cut(s) 273, 529, 535
Hpy188III TCNNGA 2 cut(s) 223, 592
Hpy8I GTNNAC 1 cut(s) 740
HpyCH4III ACNGT 3 cut(s) 191, 234, 587
HpyCH4IV ACGT 2 cut(s) 302, 730
HpyCH4V TGCA 9 cut(s) 4, 144, 165, 298, 396, 438, 482, 574, 605
HpyF10VI GCNNNNNNNGC 3 cut(s) 162, 355, 399
HpyF3I CTNAG 1 cut(s) 86
HpySE526I ACGT 2 cut(s) 302, 730
Hsp92II CATG 4 cut(s) 151, 169, 248, 595
HspAI GCGC 2 cut(s) 318, 750
Kzo9I GATC 2 cut(s) 195, 208
LpnPI CCDG 5 cut(s) 78, 236, 373, 490, 736
Lsp1109I GCAGC 2 cut(s) 361, 380
LweI GCATC 1 cut(s) 163
MaeII ACGT 2 cut(s) 302, 730
MaeIII GTNAC 2 cut(s) 370, 461
MalI GATC 2 cut(s) 197, 210
MboI GATC 2 cut(s) 195, 208
MboII GAAGA 4 cut(s) 59, 568, 577, 738
MfeI CAATTG 1 cut(s) 15
MhlI GDGCHC 3 cut(s) 94, 474, 674
MluCI AATT 3 cut(s) 15, 33, 610
MlyI GAGTC 3 cut(s) 378, 404, 634
MmeI TCCRAC 1 cut(s) 153
Mph1103I ATGCAT 1 cut(s) 576
MseI TTAA 2 cut(s) 74, 609
MslI CAYNNNNRTG 1 cut(s) 717
MspI CCGG 2 cut(s) 65, 360
MspR9I CCNGG 1 cut(s) 360
MunI CAATTG 1 cut(s) 15
Mva1269I GAATGC 1 cut(s) 146
MvnI CGCG 2 cut(s) 216, 750
MwoI GCNNNNNNNGC 3 cut(s) 162, 355, 399
NciI CCSGG 1 cut(s) 360
NdeI CATATG 1 cut(s) 576
NdeII GATC 2 cut(s) 195, 208
NlaIII CATG 4 cut(s) 151, 169, 248, 595
NmuCI GTSAC 2 cut(s) 370, 461
NsiI ATGCAT 1 cut(s) 576
NspI RCATGY 1 cut(s) 151
PagI TCATGA 1 cut(s) 591
PciI ACATGT 1 cut(s) 147
PctI GAATGC 1 cut(s) 146
PfeI GAWTC 6 cut(s) 53, 115, 125, 268, 530, 539
PflMI CCANNNNNTGG 1 cut(s) 250
PkrI GCNGC 3 cut(s) 348, 351, 395
PleI GAGTC 3 cut(s) 377, 404, 633
PpsI GAGTC 3 cut(s) 377, 404, 633
PscI ACATGT 1 cut(s) 147
PshAI GACNNNNGTC 1 cut(s) 235
Psp124BI GAGCTC 1 cut(s) 474
PspEI GGTNACC 1 cut(s) 461
PspPI GGNCC 1 cut(s) 357
PstI CTGCAG 1 cut(s) 398
RsaI GTAC 3 cut(s) 21, 278, 305
RsaNI GTAC 3 cut(s) 20, 277, 304
RseI CAYNNNNRTG 1 cut(s) 717
SacI GAGCTC 1 cut(s) 474
SaqAI TTAA 2 cut(s) 74, 609
SatI GCNGC 3 cut(s) 347, 350, 394
Sau3AI GATC 2 cut(s) 195, 208
Sau96I GGNCC 1 cut(s) 357
SchI GAGTC 3 cut(s) 378, 404, 634
ScrFI CCNGG 1 cut(s) 360
SduI GDGCHC 3 cut(s) 94, 474, 674
SetI ASST 8 cut(s) 9, 305, 422, 444, 474, 650, 733, 745
SfaNI GCATC 1 cut(s) 163
SfcI CTRYAG 1 cut(s) 394
SmiMI CAYNNNNRTG 1 cut(s) 717
SmlI CTYRAG 1 cut(s) 649
SmoI CTYRAG 1 cut(s) 649
Sse9I AATT 3 cut(s) 15, 33, 610
SsiI CCGC 3 cut(s) 347, 457, 522
SstI GAGCTC 1 cut(s) 474
StyD4I CCNGG 1 cut(s) 358
StyI CCWWGG 1 cut(s) 353
TaaI ACNGT 3 cut(s) 191, 234, 587
TaiI ACGT 2 cut(s) 305, 733
TaqI TCGA 2 cut(s) 56, 408
TaqII GACCGA 1 cut(s) 480
TasI AATT 3 cut(s) 15, 33, 610
TatI WGTACW 1 cut(s) 276
TauI GCSGC 1 cut(s) 349
TfiI GAWTC 6 cut(s) 53, 115, 125, 268, 530, 539
Tru1I TTAA 2 cut(s) 74, 609
Tru9I TTAA 2 cut(s) 74, 609
TscAI CASTG 2 cut(s) 489, 679
TseFI GTSAC 2 cut(s) 370, 461
TseI GCWGC 2 cut(s) 349, 393
Tsp45I GTSAC 2 cut(s) 370, 461
TspDTI ATGAA 2 cut(s) 552, 608
TspRI CASTG 2 cut(s) 489, 679
Van91I CCANNNNNTGG 1 cut(s) 250
XceI RCATGY 1 cut(s) 151
XmiI GTMKAC 1 cut(s) 739
Zsp2I ATGCAT 1 cut(s) 576
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.