pycom06g01080

RING-like zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0005028
Physical Location & Seq
Forward (+)
1075848 .. 1081437
5590 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1437 bp
ATGCCTTGTATATCTCCAAATGTTCAGCTGAATGAATGGGGTCAGGCTAGTATCACTGATACTGCTTCCAGAACTGCTAGCAGCTCTGCCCAACCTTCTGCTTCTTCAACTATGAACCCTTCAAGTCGTTTCCTTTCTCGCTTTAGCTTCATTCCAGGTAATGTAAGCTTCAGGTTAAGCCGGGCAACAAGTTTAGGGTCATCCAGGTCTTATCCTCTATCTTCGACAAGTGTCACGAACAATGAGGATGAGCTTCATCTACATGCAAGGCCCGCTAACAGTTTGATAGATACAGATGAAAGCCAACAAACTAATGACTTTCTTCCAGAATCACAGGTTAATAGGATGCCAGCACATATTTATAACGACACTTCTGGCAATGCACGATTAAATACTCTGGGATCTGGTTTTTCTGGCCTCTTGCAAGCTAACCAAACAAATCCTTCAAGACGTGATGCTGGTAGAAATGCTAACGGTTCAATAATGGGCGTTGGTGTAAACTCGTGTTCTCCTAGAATTCATAATGAAACAGGAAGCAGCAGAACTAGACCTTCTGATAGACGTTTGGGGGCTCGGGAACCTGTTGAACGGAATGTTCGTTTCAGCAGAACCTTAAGTGTTGGAAGACTTCGTGACAGGGTACTTCGTCGATCATCATTATCTGATTTAACATTTTCTTCTTTGCAACAAGAAGTGAGAGATACAAATCAGGGAGATGATACACGGAGTTTGGAACCTGAAGGTAATGTTGTAAACTCCGAAAATGGGTCTGGTTATCCCTCTAATATTTCTAGTTCATTGTTTGGCATTCAAGACTATGGAGTGGAAACATCAAGACCAAGAGAGGCTAGGTATCATGATCTACTTGAACACAGATCAAATTTCCTAGAGCGGAGGAGAAGAATACGATCTCAGGTTCGTGCACTTCAGCGGTTGGGGAGCCGCTTTGAAAACGTGCCTGGACATGAGAGGTCTTGTATCTTATCTGGTCAACAGAGAACAGGTCGTTGTACATGTCGTACGAGTAATCGAGATGCCGGTCCAAATGATGACAACAGTGCTAGGGCTAGCATATCAAGAATAGTTATGTTAGCTGAGGCTTTGTTTGAGGTTCTGGATGAAATTCACCAGCAATCCGTGGTTTTATCTTCCCGACCTTCTGTATCGTCAATTGGATCTGTTCCTGCTCCTAATGAAGTTGTGGAATCTTTGCCTGTCAAATTGTTTTCGAAGTTGCAAAAAAATGAGTATGAGGAGGCTGCACAATGCTACATATGCCTTGTGGAGTATGAAGAAGGAGACAGAATGAGAATACTGCCTTGCCATCATGAATTTCATAAAACTTGTATCGACAAGTGGCTCAAGGAGATTCACAGGGTATGCCCGCTCTGTCGCAGGGATATCTGTAGATCTGATGAATTGCCGGCAGAGAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2

Protein Analysis

479

Amino Acids

53.3

Weight (kDa)

8.46

Isoelectric Point (pI)

61.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_2 PF13639 422 - 465 2.9e-13 Ring finger domain
zf-RING_11 PF17123 422 - 450 5.6e-09 RING-like zinc finger
zf-rbx1 PF12678 422 - 465 1.3e-08 RING-H2 zinc finger domain
zf-C3HC4_2 PF13923 422 - 464 3.2e-07 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4 PF00097 423 - 464 1.1e-08 Zinc finger, C3HC4 type (RING finger)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 363
AccBSI CCGCTC 2 cut(s) 892, 1387
AciI CCGC 5 cut(s) 273, 892, 931, 943, 1385
AclWI GGATC 2 cut(s) 409, 1183
AcsI RAATTY 4 cut(s) 516, 880, 1122, 1331
AcuI CTGAAG 3 cut(s) 154, 759, 911
AfaI GTAC 3 cut(s) 642, 1012, 1021
AfiI CCNNNNNNNGG 1 cut(s) 765
AflII CTTAAG 1 cut(s) 613
AflIII ACRYGT 1 cut(s) 1013
AgsI TTSAA 8 cut(s) 108, 123, 447, 480, 587, 812, 869, 950
AjiI CACGTC 1 cut(s) 452
AjnI CCWGG 3 cut(s) 154, 203, 958
AluBI AGCT 7 cut(s) 28, 84, 147, 168, 253, 428, 1094
AluI AGCT 7 cut(s) 28, 84, 147, 168, 253, 428, 1094
Alw21I GWGCWC 1 cut(s) 925
Alw26I GTCTC 1 cut(s) 1293
Alw44I GTGCAC 1 cut(s) 921
AlwI GGATC 2 cut(s) 409, 1183
Ama87I CYCGRG 1 cut(s) 573
AoxI GGCC 2 cut(s) 269, 415
ApaLI GTGCAC 1 cut(s) 921
ApeKI GCWGC 3 cut(s) 81, 537, 1259
ApoI RAATTY 4 cut(s) 516, 880, 1122, 1331
AspS9I GGNCC 2 cut(s) 270, 1040
AsuC2I CCSGG 1 cut(s) 182
AsuHPI GGTGA 1 cut(s) 1118
AsuII TTCGAA 1 cut(s) 1229
AsuNHI GCTAGC 2 cut(s) 77, 1067
AvaI CYCGRG 1 cut(s) 573
AvaII GGWCC 1 cut(s) 1040
BaeGI GKGCMC 1 cut(s) 925
BanII GRGCYC 1 cut(s) 574
BauI CACGAG 1 cut(s) 502
BbsI GAAGAC 1 cut(s) 631
Bbv12I GWGCWC 1 cut(s) 925
BbvCI CCTCAGC 1 cut(s) 1095
BbvI GCAGC 3 cut(s) 93, 549, 1246
BccI CCATC 1 cut(s) 1332
BciT130I CCWGG 3 cut(s) 156, 205, 960
BcnI CCSGG 1 cut(s) 182
BcoDI GTCTC 1 cut(s) 1293
BfaI CTAG 9 cut(s) 48, 78, 513, 546, 792, 849, 887, 1062, 1068
BfmI CTRYAG 1 cut(s) 1405
BfrI CTTAAG 1 cut(s) 613
BglII AGATCT 1 cut(s) 1409
BisI GCNGC 4 cut(s) 82, 538, 943, 1260
BlsI GCNGC 4 cut(s) 83, 539, 944, 1261
Bme1390I CCNGG 4 cut(s) 156, 182, 205, 960
Bme18I GGWCC 1 cut(s) 1040
BmeT110I CYCGRG 1 cut(s) 573
BmgBI CACGTC 1 cut(s) 452
BmgT120I GGNCC 2 cut(s) 270, 1040
BmiI GGNNCC 3 cut(s) 579, 735, 941
BmrFI CCNGG 4 cut(s) 156, 182, 205, 960
BmsI GCATC 3 cut(s) 336, 445, 1024
BmtI GCTAGC 2 cut(s) 81, 1071
BoxI GACNNNNGTC 1 cut(s) 230
BpiI GAAGAC 1 cut(s) 631
Bpu10I CCTNAGC 1 cut(s) 1095
Bpu14I TTCGAA 1 cut(s) 1229
BpuEI CTTGAG 1 cut(s) 1346
BpuMI CCSGG 1 cut(s) 182
BsaBI GATNNNNATC 1 cut(s) 705
BsaJI CCNNGG 1 cut(s) 1137
Bsc4I CCNNNNNNNGG 1 cut(s) 765
Bse118I RCCGGY 2 cut(s) 1037, 1423
Bse3DI GCAATG 1 cut(s) 385
Bse8I GATNNNNATC 1 cut(s) 705
BseBI CCWGG 3 cut(s) 156, 205, 960
BseDI CCNNGG 1 cut(s) 1137
BseGI GGATG 4 cut(s) 200, 253, 351, 1123
BseJI GATNNNNATC 1 cut(s) 705
BseLI CCNNNNNNNGG 1 cut(s) 765
BseMI GCAATG 1 cut(s) 385
BseMII CTCAG 2 cut(s) 926, 1086
BseRI GAGGAG 2 cut(s) 910, 1268
BseSI GKGCMC 1 cut(s) 925
BseXI GCAGC 3 cut(s) 93, 549, 1246
BsgI GTGCAG 1 cut(s) 1245
BshFI GGCC 2 cut(s) 271, 417
BsiHKAI GWGCWC 1 cut(s) 925
BsiHKCI CYCGRG 1 cut(s) 573
BsiSI CCGG 3 cut(s) 181, 1038, 1424
BsiWI CGTACG 1 cut(s) 1019
BslI CCNNNNNNNGG 1 cut(s) 765
BsmAI GTCTC 1 cut(s) 1293
BsmI GAATGC 1 cut(s) 807
BsnI GGCC 2 cut(s) 271, 417
BsoBI CYCGRG 1 cut(s) 573
Bsp119I TTCGAA 1 cut(s) 1229
Bsp1286I GDGCHC 2 cut(s) 574, 925
Bsp1407I TGTACA 1 cut(s) 1010
Bsp143I GATC 7 cut(s) 401, 650, 859, 875, 908, 1175, 1409
BspACI CCGC 5 cut(s) 273, 892, 931, 943, 1385
BspANI GGCC 2 cut(s) 271, 417
BspCNI CTCAG 2 cut(s) 925, 1087
BspHI TCATGA 2 cut(s) 856, 1327
BspLI GGNNCC 3 cut(s) 579, 735, 941
BspOI GCTAGC 2 cut(s) 81, 1071
BspPI GGATC 2 cut(s) 409, 1183
BspT104I TTCGAA 1 cut(s) 1229
BspTI CTTAAG 1 cut(s) 613
BsrBI CCGCTC 2 cut(s) 892, 1387
BsrDI GCAATG 1 cut(s) 385
BsrFI RCCGGY 2 cut(s) 1037, 1423
BsrGI TGTACA 1 cut(s) 1010
BssAI RCCGGY 2 cut(s) 1037, 1423
BssECI CCNNGG 1 cut(s) 1137
BssMI GATC 7 cut(s) 401, 650, 859, 875, 908, 1175, 1409
BssSI CACGAG 1 cut(s) 502
Bst2BI CACGAG 1 cut(s) 502
Bst2UI CCWGG 3 cut(s) 156, 205, 960
Bst4CI ACNGT 3 cut(s) 281, 476, 1058
BstAFI CTTAAG 1 cut(s) 613
BstAUI TGTACA 1 cut(s) 1010
BstBI TTCGAA 1 cut(s) 1229
BstC8I GCNNGC 7 cut(s) 79, 273, 351, 426, 1069, 1385, 1425
BstDEI CTNAG 2 cut(s) 912, 1095
BstDSI CCRYGG 1 cut(s) 1137
BstF5I GGATG 4 cut(s) 200, 253, 351, 1123
BstKTI GATC 7 cut(s) 404, 653, 862, 878, 911, 1178, 1412
BstMAI GTCTC 1 cut(s) 1293
BstMBI GATC 7 cut(s) 401, 650, 859, 875, 908, 1175, 1409
BstMWI GCNNNNNNNGC 2 cut(s) 272, 1275
BstNI CCWGG 3 cut(s) 156, 205, 960
BstNSI RCATGY 2 cut(s) 266, 1017
BstPAI GACNNNNGTC 1 cut(s) 230
BstSCI CCNGG 4 cut(s) 154, 180, 203, 958
BstSFI CTRYAG 1 cut(s) 1405
BstSLI GKGCMC 1 cut(s) 925
BstV1I GCAGC 3 cut(s) 93, 549, 1246
BstV2I GAAGAC 1 cut(s) 631
BstX2I RGATCY 3 cut(s) 401, 1175, 1409
BstYI RGATCY 3 cut(s) 401, 1175, 1409
BsuRI GGCC 2 cut(s) 271, 417
BtgI CCRYGG 1 cut(s) 1137
BtrI CACGTC 1 cut(s) 452
BtsCI GGATG 4 cut(s) 200, 253, 351, 1123
BtsIMutI CAGTG 2 cut(s) 54, 1063
Cac8I GCNNGC 7 cut(s) 79, 273, 351, 426, 1069, 1385, 1425
CciI TCATGA 2 cut(s) 856, 1327
Cfr10I RCCGGY 2 cut(s) 1037, 1423
Cfr13I GGNCC 2 cut(s) 270, 1040
Csp6I GTAC 3 cut(s) 641, 1011, 1020
CviAII CATG 5 cut(s) 263, 857, 965, 1014, 1328
CviQI GTAC 3 cut(s) 641, 1011, 1020
DdeI CTNAG 2 cut(s) 912, 1095
DpnI GATC 7 cut(s) 403, 652, 861, 877, 910, 1177, 1411
DpnII GATC 7 cut(s) 401, 650, 859, 875, 908, 1175, 1409
Eco24I GRGCYC 1 cut(s) 574
Eco32I GATATC 1 cut(s) 1402
Eco47I GGWCC 1 cut(s) 1040
Eco57I CTGAAG 3 cut(s) 154, 759, 911
Eco88I CYCGRG 1 cut(s) 573
EcoRI GAATTC 1 cut(s) 516
EcoRII CCWGG 3 cut(s) 154, 203, 958
EcoRV GATATC 1 cut(s) 1402
EcoT38I GRGCYC 1 cut(s) 574
FaeI CATG 5 cut(s) 266, 860, 968, 1017, 1331
FatI CATG 5 cut(s) 262, 856, 964, 1013, 1327
FauI CCCGC 2 cut(s) 280, 1392
FauNDI CATATG 1 cut(s) 1274
Fnu4HI GCNGC 4 cut(s) 82, 538, 943, 1260
FokI GGATG 4 cut(s) 187, 260, 358, 1130
FriOI GRGCYC 1 cut(s) 574
Fsp4HI GCNGC 4 cut(s) 82, 538, 943, 1260
FspBI CTAG 9 cut(s) 48, 78, 513, 546, 792, 849, 887, 1062, 1068
GluI GCNGC 4 cut(s) 82, 538, 943, 1260
HaeIII GGCC 2 cut(s) 271, 417
HapII CCGG 3 cut(s) 181, 1038, 1424
Hin1II CATG 5 cut(s) 266, 860, 968, 1017, 1331
HincII GTYRAC 1 cut(s) 992
HindII GTYRAC 1 cut(s) 992
HindIII AAGCTT 1 cut(s) 166
HinfI GANTC 3 cut(s) 329, 1205, 1369
HpaII CCGG 3 cut(s) 181, 1038, 1424
HphI GGTGA 1 cut(s) 1118
Hpy166II GTNNAC 4 cut(s) 499, 754, 923, 992
Hpy188I TCNGA 4 cut(s) 556, 664, 760, 1414
Hpy8I GTNNAC 4 cut(s) 499, 754, 923, 992
Hpy99I CGWCG 1 cut(s) 651
HpyAV CCTTC 7 cut(s) 105, 129, 453, 561, 734, 1167, 1289
HpyCH4III ACNGT 3 cut(s) 281, 476, 1058
HpyCH4IV ACGT 3 cut(s) 451, 562, 954
HpyCH4V TGCA 7 cut(s) 266, 383, 424, 685, 923, 1237, 1262
HpyF10VI GCNNNNNNNGC 2 cut(s) 272, 1275
HpyF3I CTNAG 2 cut(s) 912, 1095
HpySE526I ACGT 3 cut(s) 451, 562, 954
Hsp92II CATG 5 cut(s) 266, 860, 968, 1017, 1331
KroI GCCGGC 1 cut(s) 1423
KroNI GCCGGC 1 cut(s) 1425
Kzo9I GATC 7 cut(s) 401, 650, 859, 875, 908, 1175, 1409
LmnI GCTCC 2 cut(s) 939, 1192
Lsp1109I GCAGC 3 cut(s) 93, 549, 1246
LweI GCATC 3 cut(s) 336, 445, 1024
MaeI CTAG 9 cut(s) 48, 78, 513, 546, 792, 849, 887, 1062, 1068
MaeII ACGT 3 cut(s) 451, 562, 954
MaeIII GTNAC 2 cut(s) 232, 632
MalI GATC 7 cut(s) 403, 652, 861, 877, 910, 1177, 1411
MbiI CCGCTC 2 cut(s) 892, 1387
MboI GATC 7 cut(s) 401, 650, 859, 875, 908, 1175, 1409
MboII GAAGA 8 cut(s) 96, 213, 314, 636, 669, 912, 1140, 1304
MfeI CAATTG 1 cut(s) 1170
MflI RGATCY 3 cut(s) 401, 1175, 1409
MhlI GDGCHC 2 cut(s) 574, 925
MluCI AATT 7 cut(s) 516, 880, 1122, 1170, 1220, 1331, 1418
MmeI TCCRAC 1 cut(s) 601
MroNI GCCGGC 1 cut(s) 1423
MseI TTAA 5 cut(s) 176, 339, 389, 614, 668
MslI CAYNNNNRTG 1 cut(s) 261
MspA1I CMGCKG 2 cut(s) 28, 931
MspCI CTTAAG 1 cut(s) 613
MspI CCGG 3 cut(s) 181, 1038, 1424
MspR9I CCNGG 4 cut(s) 156, 182, 205, 960
MunI CAATTG 1 cut(s) 1170
Mva1269I GAATGC 1 cut(s) 807
MvaI CCWGG 3 cut(s) 156, 205, 960
MwoI GCNNNNNNNGC 2 cut(s) 272, 1275
NaeI GCCGGC 1 cut(s) 1425
NciI CCSGG 1 cut(s) 182
NdeI CATATG 1 cut(s) 1274
NdeII GATC 7 cut(s) 401, 650, 859, 875, 908, 1175, 1409
NgoMIV GCCGGC 1 cut(s) 1423
NheI GCTAGC 2 cut(s) 77, 1067
NlaIII CATG 5 cut(s) 266, 860, 968, 1017, 1331
NlaIV GGNNCC 3 cut(s) 579, 735, 941
NmuCI GTSAC 2 cut(s) 232, 632
NspI RCATGY 2 cut(s) 266, 1017
NspV TTCGAA 1 cut(s) 1229
PagI TCATGA 2 cut(s) 856, 1327
PciI ACATGT 1 cut(s) 1013
PcsI WCGNNNNNNNCGW 1 cut(s) 595
PctI GAATGC 1 cut(s) 807
PdiI GCCGGC 1 cut(s) 1425
PfeI GAWTC 3 cut(s) 329, 1205, 1369
Pfl23II CGTACG 1 cut(s) 1019
PkrI GCNGC 4 cut(s) 83, 539, 944, 1261
PscI ACATGT 1 cut(s) 1013
PshAI GACNNNNGTC 1 cut(s) 230
PsiI TTATAA 1 cut(s) 363
Psp6I CCWGG 3 cut(s) 154, 203, 958
PspGI CCWGG 3 cut(s) 154, 203, 958
PspLI CGTACG 1 cut(s) 1019
PspN4I GGNNCC 3 cut(s) 579, 735, 941
PspPI GGNCC 2 cut(s) 270, 1040
PsuI RGATCY 3 cut(s) 401, 1175, 1409
PvuII CAGCTG 1 cut(s) 28
RsaI GTAC 3 cut(s) 642, 1012, 1021
RsaNI GTAC 3 cut(s) 641, 1011, 1020
RseI CAYNNNNRTG 1 cut(s) 261
SaqAI TTAA 5 cut(s) 176, 339, 389, 614, 668
SatI GCNGC 4 cut(s) 82, 538, 943, 1260
Sau3AI GATC 7 cut(s) 401, 650, 859, 875, 908, 1175, 1409
Sau96I GGNCC 2 cut(s) 270, 1040
ScrFI CCNGG 4 cut(s) 156, 182, 205, 960
SduI GDGCHC 2 cut(s) 574, 925
SfaNI GCATC 3 cut(s) 336, 445, 1024
SfcI CTRYAG 1 cut(s) 1405
SfuI TTCGAA 1 cut(s) 1229
SinI GGWCC 1 cut(s) 1040
SmiMI CAYNNNNRTG 1 cut(s) 261
SmlI CTYRAG 2 cut(s) 613, 1361
SmoI CTYRAG 2 cut(s) 613, 1361
Sse9I AATT 7 cut(s) 516, 880, 1122, 1170, 1220, 1331, 1418
SsiI CCGC 5 cut(s) 273, 892, 931, 943, 1385
SspI AATATT 1 cut(s) 787
SspMI CTAG 9 cut(s) 48, 78, 513, 546, 792, 849, 887, 1062, 1068
StyD4I CCNGG 4 cut(s) 154, 180, 203, 958
TaaI ACNGT 3 cut(s) 281, 476, 1058
TaiI ACGT 3 cut(s) 454, 565, 957
TaqI TCGA 5 cut(s) 224, 649, 1030, 1229, 1350
TasI AATT 7 cut(s) 516, 880, 1122, 1170, 1220, 1331, 1418
TatI WGTACW 1 cut(s) 1010
TauI GCSGC 1 cut(s) 945
TfiI GAWTC 3 cut(s) 329, 1205, 1369
Tru1I TTAA 5 cut(s) 176, 339, 389, 614, 668
Tru9I TTAA 5 cut(s) 176, 339, 389, 614, 668
TscAI CASTG 2 cut(s) 61, 1063
TseFI GTSAC 2 cut(s) 232, 632
TseI GCWGC 3 cut(s) 81, 537, 1259
Tsp45I GTSAC 2 cut(s) 232, 632
TspGWI ACGGA 3 cut(s) 604, 739, 1126
TspRI CASTG 2 cut(s) 61, 1063
Vha464I CTTAAG 1 cut(s) 613
VneI GTGCAC 1 cut(s) 921
VpaK11BI GGWCC 1 cut(s) 1040
XapI RAATTY 4 cut(s) 516, 880, 1122, 1331
XceI RCATGY 2 cut(s) 266, 1017
XspI CTAG 9 cut(s) 48, 78, 513, 546, 792, 849, 887, 1062, 1068
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.