Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0005508

Physical Location & Seq

Genomic Coordinates Forward (+)

1230162 .. 1232555

Gene Structure 2394 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGATCATAAAAGGAGTGTTCAGGAGGTACGAAAGATGGAACCCAGTGCATCCAACGAGTGGAGCGTTTTGGGGATTGGGTGTAGGCATTGGTTGTGGGATTGGATGGGGACCTGGTTTCGGGCCTGAGGTAATTGGCTATGTCGGAGCTGGCTGCGGTCTTGGCTTCTCCGTCGGTTTCACTCTGCTCGGTGCCGGAATCGGTCTCCCTGCCAATTGGCTCTTTCACCTTCCGTATAGTGCTGTTATGGCGGCAAGAAGTAGTGCACTGGAGATTGGCCAATCTAGTGGCTTTCCTTTCCCCAAAAGCATTGCAGGGGAGGGCTGGAACAGCATTGCACCTTGCATCACAAACCTGCAAAGGGAAGCCGGTGGAAGATTCTCTAGCTTTAAGGACCAGCATCTCTTGGCCTTGGAGAAAGGGGTAGATTTATCTGACTTGAAGAGCCGCCTAAGCGTCGGTACTAGGTCTCTTTCCCAAGGTGTTGAAGCATTTCGCGGACGCTTCTTCCACTTTCCCAAAGGTACAAAAGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

179

Amino Acids

18.91

Weight (kDa)

9.55

Isoelectric Point (pI)

31.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005508)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19070 AT4G19070
fragaria_vesca	FvH4_5g23880 FvH4_5g23880 FvH4_5g23880
malus_domestica	MD06G1014600.v1.1
prunus_persica	Prupe.5G021500_v2.0.a1 Prupe.5G021500_v2.0.a1 Prupe.5G021500_v2.0.a1 Prupe.5G021500_v2.0.a1
pyrus_communis	pycom06g01180
rosa_chinensis	RchiOBHm_Chr7g0213271
rosa_laevigata	RLG00000002816 RLG00000003095 RLG00000012098 RLG00000023533
rosa_multiflora	Rmu_co8323751.1_g000001 Rmu_sc0002226.1_g000016 Rmu_ssc0000084.1_g000027
rosa_roxburghii	Rroxscaffold_3G00246110
rosa_rugosa	Rorug07G0140900 Rorug07G0141000
rosa_samantha	Rh6BG340200 Rh6BG375900 Rh7AG272500 Rh7CG291900 Rh7DG280400
rosa_wichuraiana	Rw6G029030 Rw7G023660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	363
AccB1I	GGYRCC	1 cut(s)	191
AccB7I	CCANNNNNTGG	1 cut(s)	59
AccII	CGCG	1 cut(s)	498
AciI	CCGC	4 cut(s)	156, 251, 448, 498
AcoI	YGGCCR	1 cut(s)	277
AfaI	GTAC	3 cut(s)	29, 463, 526
AfiI	CCNNNNNNNGG	3 cut(s)	59, 119, 361
AgsI	TTSAA	2 cut(s)	442, 488
AjnI	CCWGG	1 cut(s)	112
AluBI	AGCT	2 cut(s)	149, 387
AluI	AGCT	2 cut(s)	149, 387
Alw21I	GWGCWC	1 cut(s)	268
Alw26I	GTCTC	2 cut(s)	209, 474
Alw44I	GTGCAC	1 cut(s)	264
AoxI	GGCC	3 cut(s)	122, 277, 408
ApaLI	GTGCAC	1 cut(s)	264
ApeKI	GCWGC	1 cut(s)	153
Asp700I	GAANNNNTTC	1 cut(s)	492
AspS9I	GGNCC	3 cut(s)	110, 122, 394
AsuHPI	GGTGA	1 cut(s)	218
AvaII	GGWCC	2 cut(s)	110, 394
AxyI	CCTNAGG	1 cut(s)	126
BaeGI	GKGCMC	1 cut(s)	268
BalI	TGGCCA	1 cut(s)	279
BanI	GGYRCC	1 cut(s)	191
Bbv12I	GWGCWC	1 cut(s)	268
BbvI	GCAGC	1 cut(s)	140
BccI	CCATC	2 cut(s)	30, 99
BciT130I	CCWGG	1 cut(s)	114
BclI	TGATCA	1 cut(s)	3
BcoDI	GTCTC	2 cut(s)	209, 474
BfaI	CTAG	3 cut(s)	285, 384, 465
BfuAI	ACCTGC	1 cut(s)	363
BisI	GCNGC	3 cut(s)	154, 252, 448
BlsI	GCNGC	3 cut(s)	155, 253, 449
Bme1390I	CCNGG	1 cut(s)	114
Bme18I	GGWCC	2 cut(s)	110, 394
BmgT120I	GGNCC	3 cut(s)	110, 122, 394
BmiI	GGNNCC	3 cut(s)	41, 111, 193
BmrFI	CCNGG	1 cut(s)	114
BmrI	ACTGGG	1 cut(s)	38
BmsI	GCATC	3 cut(s)	58, 354, 409
BmuI	ACTGGG	1 cut(s)	38
BpmI	CTGGAG	1 cut(s)	290
Bpu10I	CCTNAGC	1 cut(s)	452
BsaI	GGTCTC	2 cut(s)	209, 474
BsaJI	CCNNGG	2 cut(s)	411, 478
Bsc4I	CCNNNNNNNGG	3 cut(s)	59, 119, 361
Bse118I	RCCGGY	1 cut(s)	368
Bse1I	ACTGG	2 cut(s)	44, 273
Bse21I	CCTNAGG	1 cut(s)	126
Bse3DI	GCAATG	2 cut(s)	309, 333
BseBI	CCWGG	1 cut(s)	114
BseDI	CCNNGG	2 cut(s)	411, 478
BseGI	GGATG	2 cut(s)	49, 110
BseLI	CCNNNNNNNGG	3 cut(s)	59, 119, 361
BseMI	GCAATG	2 cut(s)	309, 333
BseMII	CTCAG	1 cut(s)	117
BseNI	ACTGG	2 cut(s)	44, 273
BseSI	GKGCMC	1 cut(s)	268
BseXI	GCAGC	1 cut(s)	140
Bsh1236I	CGCG	1 cut(s)	498
BshFI	GGCC	3 cut(s)	124, 279, 410
BshNI	GGYRCC	1 cut(s)	191
BsiHKAI	GWGCWC	1 cut(s)	268
BsiSI	CCGG	2 cut(s)	195, 369
BslFI	GGGAC	1 cut(s)	123
BslI	CCNNNNNNNGG	3 cut(s)	59, 119, 361
BsmAI	GTCTC	2 cut(s)	209, 474
BsmFI	GGGAC	1 cut(s)	123
BsnI	GGCC	3 cut(s)	124, 279, 410
Bso31I	GGTCTC	2 cut(s)	209, 474
Bsp1286I	GDGCHC	1 cut(s)	268
Bsp143I	GATC	1 cut(s)	3
BspACI	CCGC	4 cut(s)	156, 251, 448, 498
BspANI	GGCC	3 cut(s)	124, 279, 410
BspCNI	CTCAG	1 cut(s)	118
BspFNI	CGCG	1 cut(s)	498
BspLI	GGNNCC	3 cut(s)	41, 111, 193
BspMI	ACCTGC	1 cut(s)	363
BspQI	GCTCTTC	1 cut(s)	437
BspT107I	GGYRCC	1 cut(s)	191
BspTNI	GGTCTC	2 cut(s)	209, 474
BsrDI	GCAATG	2 cut(s)	309, 333
BsrFI	RCCGGY	1 cut(s)	368
BsrI	ACTGG	2 cut(s)	44, 273
BssAI	RCCGGY	1 cut(s)	368
BssECI	CCNNGG	2 cut(s)	411, 478
BssMI	GATC	1 cut(s)	3
BssT1I	CCWWGG	2 cut(s)	411, 478
Bst2UI	CCWGG	1 cut(s)	114
Bst6I	CTCTTC	1 cut(s)	437
BstC8I	GCNNGC	1 cut(s)	151
BstDEI	CTNAG	2 cut(s)	126, 452
BstF5I	GGATG	2 cut(s)	49, 110
BstFNI	CGCG	1 cut(s)	498
BstKTI	GATC	1 cut(s)	6
BstMAI	GTCTC	2 cut(s)	209, 474
BstMBI	GATC	1 cut(s)	3
BstMWI	GCNNNNNNNGC	4 cut(s)	162, 248, 330, 453
BstNI	CCWGG	1 cut(s)	114
BstSCI	CCNGG	1 cut(s)	112
BstSLI	GKGCMC	1 cut(s)	268
BstUI	CGCG	1 cut(s)	498
BstV1I	GCAGC	1 cut(s)	140
BstXI	CCANNNNNNTGG	1 cut(s)	287
Bsu36I	CCTNAGG	1 cut(s)	126
BsuRI	GGCC	3 cut(s)	124, 279, 410
BtsCI	GGATG	2 cut(s)	49, 110
BtsIMutI	CAGTG	2 cut(s)	51, 266
BveI	ACCTGC	1 cut(s)	363
Cac8I	GCNNGC	1 cut(s)	151
Cfr10I	RCCGGY	1 cut(s)	368
Cfr13I	GGNCC	3 cut(s)	110, 122, 394
CseI	GACGC	2 cut(s)	445, 510
CsiI	ACCWGGT	1 cut(s)	112
Csp6I	GTAC	3 cut(s)	28, 462, 525
CviQI	GTAC	3 cut(s)	28, 462, 525
DdeI	CTNAG	2 cut(s)	126, 452
DpnI	GATC	1 cut(s)	5
DpnII	GATC	1 cut(s)	3
EaeI	YGGCCR	1 cut(s)	277
Eam1104I	CTCTTC	1 cut(s)	437
EarI	CTCTTC	1 cut(s)	437
Eco130I	CCWWGG	2 cut(s)	411, 478
Eco31I	GGTCTC	2 cut(s)	209, 474
Eco47I	GGWCC	2 cut(s)	110, 394
Eco81I	CCTNAGG	1 cut(s)	126
EcoO109I	RGGNCCY	1 cut(s)	110
EcoRII	CCWGG	1 cut(s)	112
EcoT14I	CCWWGG	2 cut(s)	411, 478
ErhI	CCWWGG	2 cut(s)	411, 478
FaiI	YATR	4 cut(s)	8, 141, 237, 248
FaqI	GGGAC	1 cut(s)	123
FbaI	TGATCA	1 cut(s)	3
Fnu4HI	GCNGC	3 cut(s)	154, 252, 448
FokI	GGATG	2 cut(s)	36, 117
Fsp4HI	GCNGC	3 cut(s)	154, 252, 448
FspBI	CTAG	3 cut(s)	285, 384, 465
GluI	GCNGC	3 cut(s)	154, 252, 448
GsuI	CTGGAG	1 cut(s)	290
HaeIII	GGCC	3 cut(s)	124, 279, 410
HapII	CCGG	2 cut(s)	195, 369
HgaI	GACGC	2 cut(s)	445, 510
HinfI	GANTC	2 cut(s)	198, 378
HpaII	CCGG	2 cut(s)	195, 369
HphI	GGTGA	1 cut(s)	218
Hpy166II	GTNNAC	1 cut(s)	266
Hpy188I	TCNGA	2 cut(s)	146, 436
Hpy188III	TCNNGA	1 cut(s)	22
Hpy8I	GTNNAC	1 cut(s)	266
Hpy99I	CGWCG	2 cut(s)	176, 461
HpyAV	CCTTC	1 cut(s)	239
HpyCH4V	TGCA	6 cut(s)	49, 266, 314, 338, 345, 358
HpyF10VI	GCNNNNNNNGC	4 cut(s)	162, 248, 330, 453
HpyF3I	CTNAG	2 cut(s)	126, 452
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	1 cut(s)	3
LguI	GCTCTTC	1 cut(s)	437
LmnI	GCTCC	2 cut(s)	62, 146
Lsp1109I	GCAGC	1 cut(s)	140
LweI	GCATC	3 cut(s)	58, 354, 409
MabI	ACCWGGT	1 cut(s)	112
MaeI	CTAG	3 cut(s)	285, 384, 465
MalI	GATC	1 cut(s)	5
MboI	GATC	1 cut(s)	3
MboII	GAAGA	3 cut(s)	387, 454, 499
MfeI	CAATTG	1 cut(s)	214
MhlI	GDGCHC	1 cut(s)	268
MlsI	TGGCCA	1 cut(s)	279
MluCI	AATT	2 cut(s)	132, 214
MluNI	TGGCCA	1 cut(s)	279
MmeI	TCCRAC	2 cut(s)	77, 124
MnlI	CCTC	3 cut(s)	18, 121, 313
Mox20I	TGGCCA	1 cut(s)	279
MroXI	GAANNNNTTC	1 cut(s)	492
MscI	TGGCCA	1 cut(s)	279
MseI	TTAA	2 cut(s)	390, 535
Msp20I	TGGCCA	1 cut(s)	279
MspI	CCGG	2 cut(s)	195, 369
MspR9I	CCNGG	1 cut(s)	114
MunI	CAATTG	1 cut(s)	214
MvaI	CCWGG	1 cut(s)	114
MvnI	CGCG	1 cut(s)	498
MwoI	GCNNNNNNNGC	4 cut(s)	162, 248, 330, 453
NdeII	GATC	1 cut(s)	3
NlaIV	GGNNCC	3 cut(s)	41, 111, 193
PciSI	GCTCTTC	1 cut(s)	437
PcsI	WCGNNNNNNNCGW	1 cut(s)	62
PdmI	GAANNNNTTC	1 cut(s)	492
PfeI	GAWTC	2 cut(s)	198, 378
PflMI	CCANNNNNTGG	1 cut(s)	59
PkrI	GCNGC	3 cut(s)	155, 253, 449
PpuMI	RGGWCCY	1 cut(s)	110
Psp5II	RGGWCCY	1 cut(s)	110
Psp6I	CCWGG	1 cut(s)	112
PspGI	CCWGG	1 cut(s)	112
PspN4I	GGNNCC	3 cut(s)	41, 111, 193
PspPI	GGNCC	3 cut(s)	110, 122, 394
PspPPI	RGGWCCY	1 cut(s)	110
RsaI	GTAC	3 cut(s)	29, 463, 526
RsaNI	GTAC	3 cut(s)	28, 462, 525
SapI	GCTCTTC	1 cut(s)	437
SaqAI	TTAA	2 cut(s)	390, 535
SatI	GCNGC	3 cut(s)	154, 252, 448
Sau3AI	GATC	1 cut(s)	3
Sau96I	GGNCC	3 cut(s)	110, 122, 394
ScrFI	CCNGG	1 cut(s)	114
SduI	GDGCHC	1 cut(s)	268
SexAI	ACCWGGT	1 cut(s)	112
SfaNI	GCATC	3 cut(s)	58, 354, 409
SinI	GGWCC	2 cut(s)	110, 394
Sse9I	AATT	2 cut(s)	132, 214
SsiI	CCGC	4 cut(s)	156, 251, 448, 498
SspMI	CTAG	3 cut(s)	285, 384, 465
StyD4I	CCNGG	1 cut(s)	112
StyI	CCWWGG	2 cut(s)	411, 478
TaqII	GACCGA	1 cut(s)	191
TasI	AATT	2 cut(s)	132, 214
TauI	GCSGC	2 cut(s)	254, 450
TfiI	GAWTC	2 cut(s)	198, 378
Tru1I	TTAA	2 cut(s)	390, 535
Tru9I	TTAA	2 cut(s)	390, 535
TscAI	CASTG	2 cut(s)	51, 273
TseI	GCWGC	1 cut(s)	153
TspGWI	ACGGA	2 cut(s)	160, 222
TspRI	CASTG	2 cut(s)	51, 273
Van91I	CCANNNNNTGG	1 cut(s)	59
VneI	GTGCAC	1 cut(s)	264
VpaK11BI	GGWCC	2 cut(s)	110, 394
XmnI	GAANNNNTTC	1 cut(s)	492
XspI	CTAG	3 cut(s)	285, 384, 465

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.