Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0004165

Physical Location & Seq

Genomic Coordinates Reverse (-)

1667793 .. 1675485

Gene Structure 7693 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGGAGTCCATACGGAAGCAAGCCACTAAGCTCAGGGAGCAAGTCGCAAAGCAACAGCAGGCTGTGTTGAAACGGTTGGGAAATTTAGGTAATGAAGCTGTTATGATTGATGAAGAGGAACTTATGTGCCACCAAAAACTTCAGGATTTGTATAATTCTACAAGGGCTACGAAGCATTTTCAGCGGAGTGTTGTTCGGGGGGTTGAGGGTTTTATTTCTACCAGCTCAAAACAAATGGAAATAGTGAGAAAGTTAGCTGAAAATTGCTGCAAATATGGAGCTGAAAATCAAAGCGCTAGCACTCATCTATCAAGGGGTTCTGAATACTTTGGTACTTCATATAATTCAATTGAAGATGAGAGAGAGGCTTTTCTTAAGGTCCTTTGTGAGCAGGTTGCTGAACCTTTACGGGCACAAATAGCAGGGGCTCCTTTGGAGGATGCTCGTCACTTGACTCATCGTTATGATAAATTGCGACAGGAGGTGGAAGCCCAGGTGGCTGACGTATTGAGGCGTCGATTGAAATCCACTTCGGTATCTGCAGAGAGTTCTGTGAAGCTTCAAAATGCAGAAGTAAGATTGACAGAGCTTAAATCTTCTACAGTGGCACTTGGGAAAGAAGCAACTGCCGCAATGTTGTCGGTTGAGGATCAGCAGCAACAGATGACTTTTCATAAGCTTCGTACTATGGTTGATGCGGAGAGATCATTTCATCAACATGCGCTTACTATTTTAGACAAGCTACATTCTGAGATGATTCTGGAGAACCCACCAAATGAATTCTCATCGCAATCAGTGAAAGTGCATCATGATACGATTTCAAATATATCTGATGATCGTGGACAACTTAACCAAGATGGCACTTTCTTCATTGCAAGAGCTATTCACCCGTTTGAGGCTCAAGCGGATGGAGAGTTGAATCTGTCCGTTGATGATTATGTTGTAGTTCGTCAGGTCGGCTCTAATGGATGGTCTGAAGGAGAAAGCAACGGCAAGGCCGGATGGTTTCCATCTGCATATATAGAGAGGCAGGAGAAAGCGCCATCCGACAAGTTAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

SH3_9

Protein Analysis

354

Amino Acids

39.75

Weight (kDa)

5.99

Isoelectric Point (pI)

45.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SH3_2	PF07653	292 - 342	1.2e-06	Variant SH3 domain
SH3_1	PF00018	293 - 338	9.8e-08	SH3 domain
SH3_9	PF14604	294 - 342	1.2e-10	Variant SH3 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004165)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31440
fragaria_vesca	FvH4_5g24360 FvH4_5g24360 FvH4_5g24360 FvH4_5g24360 FvH4_5g24360 FvH4_5g24360 FvH4_5g24360 FvH4_5g24360 FvH4_5g24360 FvH4_5g24360 FvH4_5g24360 FvH4_5g24360
malus_domestica	MD06G1021400.v1.1 MD06G1021700.v1.1
prunus_persica	Prupe.5G017200_v2.0.a1 Prupe.5G017200_v2.0.a1 Prupe.5G017200_v2.0.a1 Prupe.5G017200_v2.0.a1 Prupe.5G017200_v2.0.a1
pyrus_communis	pycom06g01560
rosa_chinensis	RchiOBHm_Chr7g0214611 RchiOBHm_Chr7g0214731
rosa_laevigata	RLG00000002726
rosa_multiflora	Rmu_sc0002308.1_g000048 Rmu_sc0003490.1_g000034
rosa_roxburghii	Rroxscaffold_3G00245130 Rroxscaffold_3G00245180
rosa_samantha	Rh7AG283500 Rh7BG274200 Rh7CG302800 Rh7DG286900
rosa_wichuraiana	Rw7G024180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	382
AciI	CCGC	4 cut(s)	184, 630, 698, 905
AclWI	GGATC	1 cut(s)	657
AcsI	RAATTY	2 cut(s)	82, 779
AcuI	CTGAAG	2 cut(s)	125, 996
AcyI	GRCGYC	1 cut(s)	514
AfaI	GTAC	2 cut(s)	334, 685
AfeI	AGCGCT	1 cut(s)	295
AfiI	CCNNNNNNNGG	1 cut(s)	895
AflII	CTTAAG	1 cut(s)	374
AgsI	TTSAA	7 cut(s)	70, 348, 353, 523, 563, 822, 919
AjnI	CCWGG	1 cut(s)	492
AlwI	GGATC	1 cut(s)	657
Aor51HI	AGCGCT	1 cut(s)	295
AoxI	GGCC	1 cut(s)	996
ApeKI	GCWGC	2 cut(s)	267, 655
ApoI	RAATTY	2 cut(s)	82, 779
AspLEI	GCGC	3 cut(s)	296, 724, 1042
AspS9I	GGNCC	1 cut(s)	379
AsuHPI	GGTGA	1 cut(s)	878
AsuNHI	GCTAGC	1 cut(s)	296
AvaII	GGWCC	1 cut(s)	379
BaeGI	GKGCMC	1 cut(s)	415
BaeI	ACNNNNGTAYC	2 cut(s)	519, 552
BanII	GRGCYC	1 cut(s)	430
BbvI	GCAGC	2 cut(s)	254, 667
BccI	CCATC	6 cut(s)	851, 902, 963, 996, 1018, 1051
BceAI	ACGGC	1 cut(s)	1006
BcgI	CGANNNNNNTGC	2 cut(s)	621, 655
BciT130I	CCWGG	1 cut(s)	494
BfaI	CTAG	1 cut(s)	297
BfmI	CTRYAG	2 cut(s)	540, 600
BfoI	RGCGCY	2 cut(s)	297, 1043
BfrI	CTTAAG	1 cut(s)	374
BfuAI	ACCTGC	1 cut(s)	382
BglI	GCCNNNNNGGC	1 cut(s)	497
BisI	GCNGC	3 cut(s)	268, 630, 656
BlsI	GCNGC	3 cut(s)	269, 631, 657
Bme1390I	CCNGG	1 cut(s)	494
Bme18I	GGWCC	1 cut(s)	379
BmgT120I	GGNCC	1 cut(s)	379
BmiI	GGNNCC	1 cut(s)	429
BmrFI	CCNGG	1 cut(s)	494
BmsI	GCATC	3 cut(s)	430, 685, 814
BmtI	GCTAGC	1 cut(s)	300
BpmI	CTGGAG	1 cut(s)	782
Bpu10I	CCTNAGC	1 cut(s)	32
BpuEI	CTTGAG	1 cut(s)	885
BsaBI	GATNNNNATC	1 cut(s)	523
BsaHI	GRCGYC	1 cut(s)	514
BsaJI	CCNNGG	1 cut(s)	492
Bsc4I	CCNNNNNNNGG	1 cut(s)	895
Bse3DI	GCAATG	2 cut(s)	639, 870
Bse8I	GATNNNNATC	1 cut(s)	523
BseBI	CCWGG	1 cut(s)	494
BseDI	CCNNGG	1 cut(s)	492
BseGI	GGATG	5 cut(s)	445, 913, 974, 1007, 1043
BseJI	GATNNNNATC	1 cut(s)	523
BseLI	CCNNNNNNNGG	1 cut(s)	895
BseMI	GCAATG	2 cut(s)	639, 870
BseMII	CTCAG	2 cut(s)	46, 741
BseSI	GKGCMC	1 cut(s)	415
BseXI	GCAGC	2 cut(s)	254, 667
BshFI	GGCC	1 cut(s)	998
BsiSI	CCGG	1 cut(s)	999
BslI	CCNNNNNNNGG	1 cut(s)	895
BsnI	GGCC	1 cut(s)	998
Bsp1286I	GDGCHC	2 cut(s)	415, 430
Bsp143I	GATC	3 cut(s)	649, 704, 835
BspACI	CCGC	4 cut(s)	184, 630, 698, 905
BspANI	GGCC	1 cut(s)	998
BspCNI	CTCAG	2 cut(s)	45, 742
BspHI	TCATGA	1 cut(s)	808
BspLI	GGNNCC	1 cut(s)	429
BspMAI	CTGCAG	1 cut(s)	544
BspMI	ACCTGC	1 cut(s)	382
BspOI	GCTAGC	1 cut(s)	300
BspPI	GGATC	1 cut(s)	657
BspTI	CTTAAG	1 cut(s)	374
BsrDI	GCAATG	2 cut(s)	639, 870
BssECI	CCNNGG	1 cut(s)	492
BssMI	GATC	3 cut(s)	649, 704, 835
BssNI	GRCGYC	1 cut(s)	514
Bst2UI	CCWGG	1 cut(s)	494
Bst4CI	ACNGT	2 cut(s)	75, 604
Bst6I	CTCTTC	1 cut(s)	108
BstACI	GRCGYC	1 cut(s)	514
BstAFI	CTTAAG	1 cut(s)	374
BstC8I	GCNNGC	3 cut(s)	21, 60, 298
BstDEI	CTNAG	3 cut(s)	27, 32, 750
BstF5I	GGATG	5 cut(s)	445, 913, 974, 1007, 1043
BstH2I	RGCGCY	2 cut(s)	297, 1043
BstHHI	GCGC	3 cut(s)	296, 724, 1042
BstKTI	GATC	3 cut(s)	652, 707, 838
BstMBI	GATC	3 cut(s)	649, 704, 835
BstMWI	GCNNNNNNNGC	5 cut(s)	37, 181, 419, 497, 629
BstNI	CCWGG	1 cut(s)	494
BstNSI	RCATGY	1 cut(s)	722
BstSCI	CCNGG	1 cut(s)	492
BstSFI	CTRYAG	2 cut(s)	540, 600
BstSLI	GKGCMC	1 cut(s)	415
BstV1I	GCAGC	2 cut(s)	254, 667
BsuRI	GGCC	1 cut(s)	998
BtgZI	GCGATG	1 cut(s)	771
BtsCI	GGATG	5 cut(s)	445, 913, 974, 1007, 1043
BtsIMutI	CAGTG	2 cut(s)	609, 801
BveI	ACCTGC	1 cut(s)	382
Cac8I	GCNNGC	3 cut(s)	21, 60, 298
CciI	TCATGA	1 cut(s)	808
CfoI	GCGC	3 cut(s)	296, 724, 1042
Cfr13I	GGNCC	1 cut(s)	379
CseI	GACGC	1 cut(s)	503
Csp6I	GTAC	2 cut(s)	333, 684
CviAII	CATG	2 cut(s)	719, 809
CviQI	GTAC	2 cut(s)	333, 684
DdeI	CTNAG	3 cut(s)	27, 32, 750
DpnI	GATC	3 cut(s)	651, 706, 837
DpnII	GATC	3 cut(s)	649, 704, 835
Eam1104I	CTCTTC	1 cut(s)	108
EarI	CTCTTC	1 cut(s)	108
Eco24I	GRGCYC	1 cut(s)	430
Eco47I	GGWCC	1 cut(s)	379
Eco47III	AGCGCT	1 cut(s)	295
Eco57I	CTGAAG	2 cut(s)	125, 996
EcoO109I	RGGNCCY	1 cut(s)	379
EcoRI	GAATTC	1 cut(s)	779
EcoRII	CCWGG	1 cut(s)	492
EcoT38I	GRGCYC	1 cut(s)	430
FaeI	CATG	2 cut(s)	722, 812
FalI	AAGNNNNNCTT	2 cut(s)	105, 137
FatI	CATG	2 cut(s)	718, 808
Fnu4HI	GCNGC	3 cut(s)	268, 630, 656
FokI	GGATG	5 cut(s)	452, 920, 981, 1014, 1030
FriOI	GRGCYC	1 cut(s)	430
Fsp4HI	GCNGC	3 cut(s)	268, 630, 656
FspBI	CTAG	1 cut(s)	297
GlaI	GCGC	3 cut(s)	295, 723, 1041
GluI	GCNGC	3 cut(s)	268, 630, 656
GsuI	CTGGAG	1 cut(s)	782
HaeII	RGCGCY	2 cut(s)	297, 1043
HaeIII	GGCC	1 cut(s)	998
HapII	CCGG	1 cut(s)	999
HgaI	GACGC	1 cut(s)	503
HhaI	GCGC	3 cut(s)	296, 724, 1042
Hin1I	GRCGYC	1 cut(s)	514
Hin1II	CATG	2 cut(s)	722, 812
Hin6I	GCGC	3 cut(s)	294, 722, 1040
HinP1I	GCGC	3 cut(s)	294, 722, 1040
HindIII	AAGCTT	2 cut(s)	557, 677
HinfI	GANTC	4 cut(s)	5, 454, 757, 919
HpaII	CCGG	1 cut(s)	999
HphI	GGTGA	1 cut(s)	878
Hpy166II	GTNNAC	1 cut(s)	842
Hpy188I	TCNGA	5 cut(s)	322, 751, 832, 976, 1048
Hpy188III	TCNNGA	3 cut(s)	143, 761, 809
Hpy8I	GTNNAC	1 cut(s)	842
Hpy99I	CGWCG	1 cut(s)	519
HpyAV	CCTTC	1 cut(s)	971
HpyCH4III	ACNGT	2 cut(s)	75, 604
HpyCH4IV	ACGT	1 cut(s)	504
HpyCH4V	TGCA	6 cut(s)	270, 542, 569, 805, 875, 1016
HpyF10VI	GCNNNNNNNGC	5 cut(s)	37, 181, 419, 497, 629
HpyF3I	CTNAG	3 cut(s)	27, 32, 750
HpySE526I	ACGT	1 cut(s)	504
Hsp92I	GRCGYC	1 cut(s)	514
Hsp92II	CATG	2 cut(s)	722, 812
HspAI	GCGC	3 cut(s)	294, 722, 1040
Kzo9I	GATC	3 cut(s)	649, 704, 835
LmnI	GCTCC	3 cut(s)	37, 278, 433
Lsp1109I	GCAGC	2 cut(s)	254, 667
LweI	GCATC	3 cut(s)	430, 685, 814
MaeI	CTAG	1 cut(s)	297
MaeII	ACGT	1 cut(s)	504
MaeIII	GTNAC	1 cut(s)	446
MalI	GATC	3 cut(s)	651, 706, 837
MboI	GATC	3 cut(s)	649, 704, 835
MboII	GAAGA	4 cut(s)	125, 365, 588, 859
MfeI	CAATTG	1 cut(s)	348
MhlI	GDGCHC	2 cut(s)	415, 430
MluCI	AATT	7 cut(s)	82, 154, 262, 343, 348, 470, 779
MlyI	GAGTC	2 cut(s)	14, 448
MnlI	CCTC	9 cut(s)	109, 199, 358, 430, 475, 504, 640, 889, 1020
MseI	TTAA	4 cut(s)	375, 591, 849, 1055
MslI	CAYNNNNRTG	2 cut(s)	462, 717
MspA1I	CMGCKG	1 cut(s)	184
MspCI	CTTAAG	1 cut(s)	374
MspI	CCGG	1 cut(s)	999
MspR9I	CCNGG	1 cut(s)	494
MunI	CAATTG	1 cut(s)	348
MvaI	CCWGG	1 cut(s)	494
MwoI	GCNNNNNNNGC	5 cut(s)	37, 181, 419, 497, 629
NdeII	GATC	3 cut(s)	649, 704, 835
NheI	GCTAGC	1 cut(s)	296
NlaIII	CATG	2 cut(s)	722, 812
NlaIV	GGNNCC	1 cut(s)	429
NmuCI	GTSAC	1 cut(s)	446
NspI	RCATGY	1 cut(s)	722
PagI	TCATGA	1 cut(s)	808
PfeI	GAWTC	2 cut(s)	757, 919
PkrI	GCNGC	3 cut(s)	269, 631, 657
PleI	GAGTC	2 cut(s)	13, 448
PpsI	GAGTC	2 cut(s)	13, 448
PpuMI	RGGWCCY	1 cut(s)	379
Psp5II	RGGWCCY	1 cut(s)	379
Psp6I	CCWGG	1 cut(s)	492
PspGI	CCWGG	1 cut(s)	492
PspN4I	GGNNCC	1 cut(s)	429
PspPI	GGNCC	1 cut(s)	379
PspPPI	RGGWCCY	1 cut(s)	379
PstI	CTGCAG	1 cut(s)	544
RsaI	GTAC	2 cut(s)	334, 685
RsaNI	GTAC	2 cut(s)	333, 684
RseI	CAYNNNNRTG	2 cut(s)	462, 717
SaqAI	TTAA	4 cut(s)	375, 591, 849, 1055
SatI	GCNGC	3 cut(s)	268, 630, 656
Sau3AI	GATC	3 cut(s)	649, 704, 835
Sau96I	GGNCC	1 cut(s)	379
SchI	GAGTC	2 cut(s)	14, 448
ScrFI	CCNGG	1 cut(s)	494
SduI	GDGCHC	2 cut(s)	415, 430
SfaNI	GCATC	3 cut(s)	430, 685, 814
SfcI	CTRYAG	2 cut(s)	540, 600
SinI	GGWCC	1 cut(s)	379
SmiMI	CAYNNNNRTG	2 cut(s)	462, 717
SmlI	CTYRAG	2 cut(s)	374, 900
SmoI	CTYRAG	2 cut(s)	374, 900
Sse9I	AATT	7 cut(s)	82, 154, 262, 343, 348, 470, 779
SsiI	CCGC	4 cut(s)	184, 630, 698, 905
SspMI	CTAG	1 cut(s)	297
StyD4I	CCNGG	1 cut(s)	492
TaaI	ACNGT	2 cut(s)	75, 604
TaiI	ACGT	1 cut(s)	507
TaqI	TCGA	1 cut(s)	517
TasI	AATT	7 cut(s)	82, 154, 262, 343, 348, 470, 779
TauI	GCSGC	1 cut(s)	632
TfiI	GAWTC	2 cut(s)	757, 919
Tru1I	TTAA	4 cut(s)	375, 591, 849, 1055
Tru9I	TTAA	4 cut(s)	375, 591, 849, 1055
TscAI	CASTG	2 cut(s)	609, 801
TseFI	GTSAC	1 cut(s)	446
TseI	GCWGC	2 cut(s)	267, 655
Tsp45I	GTSAC	1 cut(s)	446
TspDTI	ATGAA	7 cut(s)	108, 126, 327, 662, 701, 792, 859
TspGWI	ACGGA	2 cut(s)	28, 916
TspRI	CASTG	2 cut(s)	609, 801
Vha464I	CTTAAG	1 cut(s)	374
VpaK11BI	GGWCC	1 cut(s)	379
XapI	RAATTY	2 cut(s)	82, 779
XceI	RCATGY	1 cut(s)	722
XspI	CTAG	1 cut(s)	297

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.