Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0007311

Physical Location & Seq

Genomic Coordinates Forward (+)

13643165 .. 13647483

Gene Structure 4319 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g08460.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2313 bp

ATGATTGATCTTGAAAGGAGACTAATATTCTTCATCAGCTTCTGTTCTAATGGGAATCTAATATTAATTTTTTCTTTTCTTTTTGTGGCAGGGGATCTTGATGGAATAGTAGTTTCTAAGGAGACAAGGAGCAAGAAAGAAGAAGAAAAGTTTGAAGCTTTTGTTTTCATGGCAGGAGAACTGCTGAGTAGTGAAGCTAACAAGTCAAGGAACAACATGGCTTCTTCCTCAGTTGGTGGGTTCTGCTACTCTGATGATGTCTCATCCAGCAATCCTACAACCACCCACTTCACCACCAATCGGATCCAAGACTTCGGGTCAAACCCTGCTGAGATCTTCAACCTCACCACTGGCATGGAGATGATAGGTTTTCCCAAGCAGCAAAGTGAAACTTCTAGCCCTGCAGCTTCATCCATCTGGAATAAAGCTGGCTTCTTTGGCAAACAACAACAGCAACCTGATTTCACAACTGGGATTTCAGAAACCAGCACTGGTCATCATCATCATCAGAACAATCTAATGGTTGGAGGATCTCCACATCATCATCACCACCATCAACAATCTAATGGTTGGCCAGAGAATAATAATAACAGGTTTATGGTGGATGATTCTTCTCTGAGGTGTGTGTTTCCATGCGAAGGAAATGAGAGGCCAAGTCAAGGCCTTTCACTCTCTCTCAGTTCAAACAATCCTTCCTCTATTGGGTTGCAGTCCTTTGAGCTCAGACAGACCAACCATCATCAGCCACATCAGCAAAACCATCAGGATGATGGTGAGGATGATCACATGAGGTTTATGCAAGATGGGTTATTGGGAAAAGCTGCTTCTCATGCTTCTGCTTCTGGGGCAAGCAGTCTTCGTCATGAAGGGCTTTTCCAGCTGAGGAACTCGAAGTACCTGGGCCCTGCCCAGCAGCTACTCAATGAGTTCTGCAGCCTTGGAACAAAGCTAACAACTGCTGATACACAAAAGCAAAAGCCCCACAAAAACAAACAGTGGGGAGAACAAGAGGACAATGGCAGTACTAGCTCTTCAAGAAACAAACAACAACCCAACATCTACTCCCTTGAATTTGTGGAGTTGCAGAAGCGAAAAAACAGACTGCTATCAATGCTTGAAGAAGTGGAAAGGAGGTATACGAACTACTGCGATCAAATGAAGGCGGTGGTGTCATCGTTCGAAGCCGTCGCCGGAGCCGGGGCTGCCACTGTGTACTCCGCCTTGGCGGCAAAGGCCATGTCAAGACATTTCAGGAGCTTGAAAGATGGGATTGTGAGTCAGATTCAGGTCACAAGGAAGGCCATGGGAGAGAAGGACCCGGTGGCTCCCGGAGCAACGAGAGGGGAGACTCCGGGGCTTCGGATTCTCGATCAAACACTTCGACAGCAGAGAGCGTTTCAGCAAATGAACATGATGGAAAGCCATCCCTGGAGACCCCAACGTGGCCTTCCTGAGAGATCAGTATCCGTTCTCCGAGCTTGGCTCTTTGAACACTTTCTTCATCCGTACCCGAGCGATGTCGATAAGCATATCTTAGCCCGCCAAACGGGTCTCTCAAGAAGCCAGGTCTCCAATTGGTTCATTAACGCTAGAGTTAGGCTTTGGAAGCCAATGGTTGAAGAAATGTACATGGAAGAAACAAAGGAGCGTGAAAACAACAACAGCATTGCCTCCTCAGATGGTATCGCGACCGACCCCAGCCAGCATCAGTCCCGGCCCGAAGATGAAAAACCGACACACGATCAACTTGTTCGAATAGATTCCGAGTGCCTCTCCTCCATCATCACCAACCCGGAGAAGAATCAATACTCCAGAAGCAGCAAAAGTACCATCTTAAGTCAACACATGCACCCGCAACAAAGTTTTGGGAGGGTAAATGAGTCATTCGGGACCATGGAGCTGGACTTTTCGTCGTATAATCATCACCAGCAACACTCTGGAGGGACGGTTTCTTATGGTAATGATCAGCATCACAACCCAAATCAGGGTTTCAATGGTGGTGGCGGTGTGTCGTTGACATTAGGGTTACAGCAGCACGATGGAAATGGGGTGAGCTTAGCATTCTCTCCTGCCTCACAGAGCTCTCTATTTTACCCTAGAGATAATGCTGAAGAATGTCAACCGGTTCAGTACTCGCTATTAGATGGGGAAGGTCAGAATAATTTGCCTTACAGAAATTTGATGGGGGCACAGTTGCTACATGACTTGGCAGGGGAAATTACAAAGAATATCGTGATCGTTTTTTTGTGTGTGAAGTTGTGGTCCCTAATCCATGAGGCTCGTGAAAAGACGATTTTTATTTCATACCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005911 GO:0006355 GO:0008150 GO:0009506 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030054 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0055044 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox_KN POX

Protein Analysis

771

Amino Acids

86.37

Weight (kDa)

6.37

Isoelectric Point (pI)

51.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007311)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G41410
fragaria_vesca	FvH4_5g02960 FvH4_5g02960 FvH4_5g02960 FvH4_5g02960
malus_domestica	MD06G1088700.v1.1 MD14G1109800.v1.1
prunus_persica	Prupe.5G104600_v2.0.a1 Prupe.5G104600_v2.0.a1
pyrus_communis	pycom06g08460 pycom14g10390
rosa_chinensis	RchiOBHm_Chr7g0196921
rosa_laevigata	RLG00000003980
rosa_multiflora	Rmu_sc0001083.1_g000011
rosa_roxburghii	Rroxscaffold_3G00258870
rosa_rugosa	Rorug07G0036500 Rorug07G0036600 Rorug07G0036700 Rorug07G0036700 Rorug07G0036800
rosa_samantha	Rh7AG161000 Rh7BG163200 Rh7CG169300 Rh7DG162600
rosa_wichuraiana	Rw7G014090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	1136
AccII	CGCG	1 cut(s)	1688
AciI	CCGC	6 cut(s)	1163, 1218, 1226, 1540, 1853, 2004
AclWI	GGATC	4 cut(s)	102, 298, 311, 538
AcoI	YGGCCR	1 cut(s)	572
AcsI	RAATTY	2 cut(s)	1070, 2176
AcuI	CTGAAG	1 cut(s)	2130
AfaI	GTAC	7 cut(s)	896, 1024, 1214, 1508, 1628, 1828, 2132
AfiI	CCNNNNNNNGG	9 cut(s)	300, 638, 659, 702, 1197, 1442, 1546, 1984, 1985
AflII	CTTAAG	1 cut(s)	1834
AgeI	ACCGGT	1 cut(s)	2122
AhdI	GACNNNNNGTC	2 cut(s)	316, 1909
AjnI	CCWGG	3 cut(s)	897, 1427, 1563
AjuI	GAANNNNNNNTTGG	2 cut(s)	1431, 1463
Alw21I	GWGCWC	2 cut(s)	723, 2084
Alw26I	GTCTC	7 cut(s)	13, 116, 265, 1340, 1426, 1556, 1573
AlwI	GGATC	4 cut(s)	102, 298, 311, 538
AlwNI	CAGNNNCTG	1 cut(s)	42
Ama87I	CYCGRG	1 cut(s)	1510
AoxI	GGCC	8 cut(s)	572, 650, 661, 901, 1233, 1299, 1444, 1715
ApaI	GGGCCC	1 cut(s)	905
ApeKI	GCWGC	8 cut(s)	379, 404, 821, 913, 933, 1202, 1818, 2032
ApoI	RAATTY	2 cut(s)	1070, 2176
ArsI	GACNNNNNNTTYG	2 cut(s)	1223, 1255
AseI	ATTAAT	1 cut(s)	65
AsiGI	ACCGGT	1 cut(s)	2122
Asp700I	GAANNNNTTC	2 cut(s)	1494, 1759
AspS9I	GGNCC	6 cut(s)	901, 902, 1315, 1716, 1890, 2262
AsuC2I	CCSGG	6 cut(s)	1198, 1319, 1329, 1353, 1714, 1793
AsuHPI	GGTGA	7 cut(s)	283, 337, 539, 785, 1777, 1916, 2062
AsuII	TTCGAA	2 cut(s)	1179, 1753
AvaI	CYCGRG	1 cut(s)	1510
AvaII	GGWCC	3 cut(s)	1315, 1890, 2262
BaeGI	GKGCMC	2 cut(s)	905, 2191
BalI	TGGCCA	1 cut(s)	574
BamHI	GGATCC	1 cut(s)	303
BanII	GRGCYC	3 cut(s)	723, 905, 2084
BarI	GAAGNNNNNNTAC	4 cut(s)	1015, 1047, 1790, 1822
BauI	CACGAG	1 cut(s)	2280
BbsI	GAAGAC	1 cut(s)	848
Bbv12I	GWGCWC	2 cut(s)	723, 2084
BbvCI	CCTCAGC	1 cut(s)	881
BbvI	GCAGC	8 cut(s)	391, 416, 808, 925, 945, 1189, 1830, 2044
BceAI	ACGGC	1 cut(s)	1169
BciT130I	CCWGG	3 cut(s)	899, 1429, 1565
BciVI	GTATCC	1 cut(s)	1474
BclI	TGATCA	2 cut(s)	781, 1963
BcnI	CCSGG	6 cut(s)	1198, 1319, 1329, 1353, 1714, 1793
BcoDI	GTCTC	7 cut(s)	13, 116, 265, 1340, 1426, 1556, 1573
BfaI	CTAG	4 cut(s)	396, 1026, 1590, 2097
BfmI	CTRYAG	2 cut(s)	402, 931
BfrI	CTTAAG	1 cut(s)	1834
BfuI	GTATCC	1 cut(s)	1474
BglI	GCCNNNNNGGC	1 cut(s)	1226
BglII	AGATCT	1 cut(s)	333
BisI	GCNGC	9 cut(s)	380, 405, 822, 914, 934, 1203, 1227, 1819, 2033
BlpI	GCTNAGC	1 cut(s)	2056
BlsI	GCNGC	9 cut(s)	381, 406, 823, 915, 935, 1204, 1228, 1820, 2034
BmcAI	AGTACT	2 cut(s)	1024, 2132
Bme1390I	CCNGG	9 cut(s)	899, 1198, 1319, 1329, 1353, 1429, 1565, 1714, 1793
Bme18I	GGWCC	3 cut(s)	1315, 1890, 2262
BmeRI	GACNNNNNGTC	2 cut(s)	316, 1909
BmeT110I	CYCGRG	1 cut(s)	1510
BmgT120I	GGNCC	6 cut(s)	901, 902, 1315, 1716, 1890, 2262
BmiI	GGNNCC	7 cut(s)	305, 903, 1195, 1317, 1326, 1891, 2264
BmrFI	CCNGG	9 cut(s)	899, 1198, 1319, 1329, 1353, 1429, 1565, 1714, 1793
BmrI	ACTGGG	1 cut(s)	480
BmsI	GCATC	2 cut(s)	1714, 1978
BmuI	ACTGGG	1 cut(s)	480
BpiI	GAAGAC	1 cut(s)	848
BplI	GAGNNNNNCTC	4 cut(s)	1467, 1499, 1757, 1789
BpmI	CTGGAG	3 cut(s)	1450, 1795, 1959
Bpu10I	CCTNAGC	1 cut(s)	881
Bpu1102I	GCTNAGC	1 cut(s)	2056
Bpu14I	TTCGAA	2 cut(s)	1179, 1753
BpuEI	CTTGAG	1 cut(s)	1540
BpuMI	CCSGG	6 cut(s)	1198, 1319, 1329, 1353, 1714, 1793
BsaBI	GATNNNNATC	2 cut(s)	1462, 1968
BsaI	GGTCTC	3 cut(s)	1426, 1556, 1573
BsaJI	CCNNGG	8 cut(s)	898, 937, 1197, 1221, 1302, 1352, 1427, 1893
BsaWI	WCCGGW	1 cut(s)	2122
BsaXI	ACNNNNNCTCC	4 cut(s)	1046, 1076, 1932, 1962
Bsc4I	CCNNNNNNNGG	9 cut(s)	300, 638, 659, 702, 1197, 1442, 1546, 1984, 1985
Bse118I	RCCGGY	1 cut(s)	2122
Bse1I	ACTGG	3 cut(s)	355, 475, 496
Bse3DI	GCAATG	1 cut(s)	1665
Bse8I	GATNNNNATC	2 cut(s)	1462, 1968
BseBI	CCWGG	3 cut(s)	899, 1429, 1565
BseDI	CCNNGG	8 cut(s)	898, 937, 1197, 1221, 1302, 1352, 1427, 1893
BseGI	GGATG	7 cut(s)	263, 410, 610, 772, 784, 1423, 1501
BseJI	GATNNNNATC	2 cut(s)	1462, 1968
BseLI	CCNNNNNNNGG	9 cut(s)	300, 638, 659, 702, 1197, 1442, 1546, 1984, 1985
BseMI	GCAATG	1 cut(s)	1665
BseMII	CTCAG	9 cut(s)	176, 243, 321, 608, 691, 736, 872, 1443, 1689
BseNI	ACTGG	3 cut(s)	355, 475, 496
BseRI	GAGGAG	2 cut(s)	1663, 1765
BseSI	GKGCMC	2 cut(s)	905, 2191
BseXI	GCAGC	8 cut(s)	391, 416, 808, 925, 945, 1189, 1830, 2044
BseYI	CCCAGC	2 cut(s)	909, 1697
Bsh1236I	CGCG	1 cut(s)	1688
Bsh1285I	CGRYCG	1 cut(s)	1692
BshFI	GGCC	8 cut(s)	574, 652, 663, 903, 1235, 1301, 1446, 1717
BshTI	ACCGGT	1 cut(s)	2122
BsiEI	CGRYCG	1 cut(s)	1692
BsiHKAI	GWGCWC	2 cut(s)	723, 2084
BsiHKCI	CYCGRG	1 cut(s)	1510
BsiSI	CCGG	8 cut(s)	1191, 1197, 1319, 1329, 1352, 1714, 1793, 2123
BslFI	GGGAC	4 cut(s)	1696, 1903, 1957, 2248
BslI	CCNNNNNNNGG	9 cut(s)	300, 638, 659, 702, 1197, 1442, 1546, 1984, 1985
BsmAI	GTCTC	7 cut(s)	13, 116, 265, 1340, 1426, 1556, 1573
BsmFI	GGGAC	4 cut(s)	1696, 1903, 1957, 2248
BsmI	GAATGC	1 cut(s)	2060
BsnI	GGCC	8 cut(s)	574, 652, 663, 903, 1235, 1301, 1446, 1717
Bso31I	GGTCTC	3 cut(s)	1426, 1556, 1573
BsoBI	CYCGRG	1 cut(s)	1510
Bsp119I	TTCGAA	2 cut(s)	1179, 1753
Bsp120I	GGGCCC	1 cut(s)	901
Bsp1286I	GDGCHC	4 cut(s)	723, 905, 2084, 2191
Bsp1407I	TGTACA	1 cut(s)	1626
Bsp1720I	GCTNAGC	1 cut(s)	2056
Bsp19I	CCATGG	2 cut(s)	1302, 1893
Bsp68I	TCGCGA	1 cut(s)	1688
BspACI	CCGC	6 cut(s)	1163, 1218, 1226, 1540, 1853, 2004
BspANI	GGCC	8 cut(s)	574, 652, 663, 903, 1235, 1301, 1446, 1717
BspCNI	CTCAG	9 cut(s)	177, 242, 322, 609, 690, 735, 873, 1444, 1688
BspFNI	CGCG	1 cut(s)	1688
BspHI	TCATGA	1 cut(s)	862
BspLI	GGNNCC	7 cut(s)	305, 903, 1195, 1317, 1326, 1891, 2264
BspMAI	CTGCAG	2 cut(s)	406, 935
BspPI	GGATC	4 cut(s)	102, 298, 311, 538
BspQI	GCTCTTC	1 cut(s)	1036
BspT104I	TTCGAA	2 cut(s)	1179, 1753
BspTI	CTTAAG	1 cut(s)	1834
BspTNI	GGTCTC	3 cut(s)	1426, 1556, 1573
BsrDI	GCAATG	1 cut(s)	1665
BsrFI	RCCGGY	1 cut(s)	2122
BsrGI	TGTACA	1 cut(s)	1626
BsrI	ACTGG	3 cut(s)	355, 475, 496
BssAI	RCCGGY	1 cut(s)	2122
BssECI	CCNNGG	8 cut(s)	898, 937, 1197, 1221, 1302, 1352, 1427, 1893
BssNAI	GTATAC	1 cut(s)	1137
BssSI	CACGAG	1 cut(s)	2280
BssT1I	CCWWGG	4 cut(s)	937, 1221, 1302, 1893
Bst1107I	GTATAC	1 cut(s)	1137
Bst2BI	CACGAG	1 cut(s)	2280
Bst2UI	CCWGG	3 cut(s)	899, 1429, 1565
Bst4CI	ACNGT	4 cut(s)	996, 1210, 1948, 2193
Bst6I	CTCTTC	1 cut(s)	1036
BstAFI	CTTAAG	1 cut(s)	1834
BstAUI	TGTACA	1 cut(s)	1626
BstBI	TTCGAA	2 cut(s)	1179, 1753
BstC8I	GCNNGC	4 cut(s)	430, 850, 1540, 1703
BstDSI	CCRYGG	2 cut(s)	1302, 1893
BstF5I	GGATG	7 cut(s)	263, 410, 610, 772, 784, 1423, 1501
BstFNI	CGCG	1 cut(s)	1688
BstMAI	GTCTC	7 cut(s)	13, 116, 265, 1340, 1426, 1556, 1573
BstMCI	CGRYCG	1 cut(s)	1692
BstNI	CCWGG	3 cut(s)	899, 1429, 1565
BstNSI	RCATGY	1 cut(s)	1849
BstSCI	CCNGG	9 cut(s)	897, 1196, 1317, 1327, 1351, 1427, 1563, 1712, 1791
BstSFI	CTRYAG	2 cut(s)	402, 931
BstSLI	GKGCMC	2 cut(s)	905, 2191
BstUI	CGCG	1 cut(s)	1688
BstV1I	GCAGC	8 cut(s)	391, 416, 808, 925, 945, 1189, 1830, 2044
BstV2I	GAAGAC	1 cut(s)	848
BstX2I	RGATCY	4 cut(s)	94, 303, 333, 530
BstXI	CCANNNNNNTGG	2 cut(s)	355, 1900
BstYI	RGATCY	4 cut(s)	94, 303, 333, 530
BstZ17I	GTATAC	1 cut(s)	1137
BsuI	GTATCC	1 cut(s)	1474
BsuRI	GGCC	8 cut(s)	574, 652, 663, 903, 1235, 1301, 1446, 1717
BtgI	CCRYGG	2 cut(s)	1302, 1893
BtgZI	GCGATG	1 cut(s)	1530
BtsCI	GGATG	7 cut(s)	263, 410, 610, 772, 784, 1423, 1501
BtsIMutI	CAGTG	4 cut(s)	348, 489, 1001, 1206
BtuMI	TCGCGA	1 cut(s)	1688
Cac8I	GCNNGC	4 cut(s)	430, 850, 1540, 1703
CaiI	CAGNNNCTG	1 cut(s)	42
CciI	TCATGA	1 cut(s)	862
Cfr10I	RCCGGY	1 cut(s)	2122
Cfr13I	GGNCC	6 cut(s)	901, 902, 1315, 1716, 1890, 2262
Csp6I	GTAC	7 cut(s)	895, 1023, 1213, 1507, 1627, 1827, 2131
CspAI	ACCGGT	1 cut(s)	2122
CspCI	CAANNNNNGTGG	2 cut(s)	1981, 2016
CviQI	GTAC	7 cut(s)	895, 1023, 1213, 1507, 1627, 1827, 2131
DriI	GACNNNNNGTC	2 cut(s)	316, 1909
EaeI	YGGCCR	1 cut(s)	572
Eam1104I	CTCTTC	1 cut(s)	1036
Eam1105I	GACNNNNNGTC	2 cut(s)	316, 1909
EarI	CTCTTC	1 cut(s)	1036
EciI	GGCGGA	1 cut(s)	1207
Ecl136II	GAGCTC	2 cut(s)	721, 2082
Eco130I	CCWWGG	4 cut(s)	937, 1221, 1302, 1893
Eco147I	AGGCCT	1 cut(s)	663
Eco24I	GRGCYC	3 cut(s)	723, 905, 2084
Eco31I	GGTCTC	3 cut(s)	1426, 1556, 1573
Eco47I	GGWCC	3 cut(s)	1315, 1890, 2262
Eco53kI	GAGCTC	2 cut(s)	721, 2082
Eco57I	CTGAAG	1 cut(s)	2130
Eco88I	CYCGRG	1 cut(s)	1510
EcoICRI	GAGCTC	2 cut(s)	721, 2082
EcoO109I	RGGNCCY	2 cut(s)	902, 1315
EcoRII	CCWGG	3 cut(s)	897, 1427, 1563
EcoT14I	CCWWGG	4 cut(s)	937, 1221, 1302, 1893
EcoT38I	GRGCYC	3 cut(s)	723, 905, 2084
ErhI	CCWWGG	4 cut(s)	937, 1221, 1302, 1893
FalI	AAGNNNNNCTT	4 cut(s)	376, 408, 1517, 1549
FaqI	GGGAC	4 cut(s)	1696, 1903, 1957, 2248
FauI	CCCGC	2 cut(s)	1547, 1860
FbaI	TGATCA	2 cut(s)	781, 1963
FblI	GTMKAC	1 cut(s)	1136
Fnu4HI	GCNGC	9 cut(s)	380, 405, 822, 914, 934, 1203, 1227, 1819, 2033
FokI	GGATG	7 cut(s)	250, 397, 617, 779, 791, 1410, 1488
FriOI	GRGCYC	3 cut(s)	723, 905, 2084
Fsp4HI	GCNGC	9 cut(s)	380, 405, 822, 914, 934, 1203, 1227, 1819, 2033
FspBI	CTAG	4 cut(s)	396, 1026, 1590, 2097
GluI	GCNGC	9 cut(s)	380, 405, 822, 914, 934, 1203, 1227, 1819, 2033
GsaI	CCCAGC	2 cut(s)	913, 1701
GsuI	CTGGAG	3 cut(s)	1450, 1795, 1959
HaeIII	GGCC	8 cut(s)	574, 652, 663, 903, 1235, 1301, 1446, 1717
HapII	CCGG	8 cut(s)	1191, 1197, 1319, 1329, 1352, 1714, 1793, 2123
HincII	GTYRAC	3 cut(s)	1841, 2016, 2120
HindII	GTYRAC	3 cut(s)	1841, 2016, 2120
HindIII	AAGCTT	1 cut(s)	156
HinfI	GANTC	9 cut(s)	55, 608, 1276, 1282, 1348, 1363, 1760, 1801, 1880
HpaII	CCGG	8 cut(s)	1191, 1197, 1319, 1329, 1352, 1714, 1793, 2123
HphI	GGTGA	7 cut(s)	283, 337, 539, 785, 1777, 1916, 2062
Hpy166II	GTNNAC	5 cut(s)	1137, 1213, 1841, 2016, 2120
Hpy8I	GTNNAC	5 cut(s)	1137, 1213, 1841, 2016, 2120
Hpy99I	CGWCG	2 cut(s)	1190, 1915
HpyAV	CCTTC	8 cut(s)	632, 702, 860, 1153, 1291, 1306, 1457, 2144
HpyCH4III	ACNGT	4 cut(s)	996, 1210, 1948, 2193
HpyCH4IV	ACGT	1 cut(s)	1441
HpyCH4V	TGCA	6 cut(s)	404, 709, 799, 933, 1084, 1849
HpySE526I	ACGT	1 cut(s)	1441
Ksp22I	TGATCA	2 cut(s)	781, 1963
LguI	GCTCTTC	1 cut(s)	1036
LmnI	GCTCC	7 cut(s)	129, 1193, 1254, 1330, 1331, 1645, 1897
Lsp1109I	GCAGC	8 cut(s)	391, 416, 808, 925, 945, 1189, 1830, 2044
LweI	GCATC	2 cut(s)	1714, 1978
MaeI	CTAG	4 cut(s)	396, 1026, 1590, 2097
MaeII	ACGT	1 cut(s)	1441
MaeIII	GTNAC	2 cut(s)	1288, 2025
MfeI	CAATTG	1 cut(s)	1573
MflI	RGATCY	4 cut(s)	94, 303, 333, 530
MhlI	GDGCHC	4 cut(s)	723, 905, 2084, 2191
MlsI	TGGCCA	1 cut(s)	574
MluCI	AATT	6 cut(s)	66, 1070, 1573, 2161, 2176, 2217
MluNI	TGGCCA	1 cut(s)	574
MlyI	GAGTC	3 cut(s)	1285, 1342, 1889
MmeI	TCCRAC	1 cut(s)	505
Mox20I	TGGCCA	1 cut(s)	574
MroXI	GAANNNNTTC	2 cut(s)	1494, 1759
MscI	TGGCCA	1 cut(s)	574
MseI	TTAA	3 cut(s)	65, 1584, 1835
MslI	CAYNNNNRTG	3 cut(s)	353, 359, 765
Msp20I	TGGCCA	1 cut(s)	574
MspA1I	CMGCKG	1 cut(s)	880
MspCI	CTTAAG	1 cut(s)	1834
MspI	CCGG	8 cut(s)	1191, 1197, 1319, 1329, 1352, 1714, 1793, 2123
MspR9I	CCNGG	9 cut(s)	899, 1198, 1319, 1329, 1353, 1429, 1565, 1714, 1793
MunI	CAATTG	1 cut(s)	1573
Mva1269I	GAATGC	1 cut(s)	2060
MvaI	CCWGG	3 cut(s)	899, 1429, 1565
MvnI	CGCG	1 cut(s)	1688
NciI	CCSGG	6 cut(s)	1198, 1319, 1329, 1353, 1714, 1793
NcoI	CCATGG	2 cut(s)	1302, 1893
NlaIV	GGNNCC	7 cut(s)	305, 903, 1195, 1317, 1326, 1891, 2264
NmuCI	GTSAC	1 cut(s)	1288
NruI	TCGCGA	1 cut(s)	1688
NspI	RCATGY	1 cut(s)	1849
NspV	TTCGAA	2 cut(s)	1179, 1753
PagI	TCATGA	1 cut(s)	862
PceI	AGGCCT	1 cut(s)	663
PciSI	GCTCTTC	1 cut(s)	1036
PctI	GAATGC	1 cut(s)	2060
PdmI	GAANNNNTTC	2 cut(s)	1494, 1759
PfeI	GAWTC	6 cut(s)	55, 608, 1282, 1363, 1760, 1801
PfoI	TCCNGGA	1 cut(s)	1327
PinAI	ACCGGT	1 cut(s)	2122
PkrI	GCNGC	9 cut(s)	381, 406, 823, 915, 935, 1204, 1228, 1820, 2034
PleI	GAGTC	3 cut(s)	1284, 1342, 1888
PpsI	GAGTC	3 cut(s)	1284, 1342, 1888
PpuMI	RGGWCCY	1 cut(s)	1315
PshBI	ATTAAT	1 cut(s)	65
Psp124BI	GAGCTC	2 cut(s)	723, 2084
Psp5II	RGGWCCY	1 cut(s)	1315
Psp6I	CCWGG	3 cut(s)	897, 1427, 1563
PspFI	CCCAGC	2 cut(s)	909, 1697
PspGI	CCWGG	3 cut(s)	897, 1427, 1563
PspN4I	GGNNCC	7 cut(s)	305, 903, 1195, 1317, 1326, 1891, 2264
PspOMI	GGGCCC	1 cut(s)	901
PspPI	GGNCC	6 cut(s)	901, 902, 1315, 1716, 1890, 2262
PspPPI	RGGWCCY	1 cut(s)	1315
PsrI	GAACNNNNNNTAC	2 cut(s)	878, 910
PstI	CTGCAG	2 cut(s)	406, 935
PstNI	CAGNNNCTG	1 cut(s)	42
PsuI	RGATCY	4 cut(s)	94, 303, 333, 530
PvuII	CAGCTG	1 cut(s)	880
RruI	TCGCGA	1 cut(s)	1688
RsaI	GTAC	7 cut(s)	896, 1024, 1214, 1508, 1628, 1828, 2132
RsaNI	GTAC	7 cut(s)	895, 1023, 1213, 1507, 1627, 1827, 2131
RseI	CAYNNNNRTG	3 cut(s)	353, 359, 765
SacI	GAGCTC	2 cut(s)	723, 2084
SapI	GCTCTTC	1 cut(s)	1036
SaqAI	TTAA	3 cut(s)	65, 1584, 1835
SatI	GCNGC	9 cut(s)	380, 405, 822, 914, 934, 1203, 1227, 1819, 2033
Sau96I	GGNCC	6 cut(s)	901, 902, 1315, 1716, 1890, 2262
ScaI	AGTACT	2 cut(s)	1024, 2132
SchI	GAGTC	3 cut(s)	1285, 1342, 1889
ScrFI	CCNGG	9 cut(s)	899, 1198, 1319, 1329, 1353, 1429, 1565, 1714, 1793
SduI	GDGCHC	4 cut(s)	723, 905, 2084, 2191
SfaNI	GCATC	2 cut(s)	1714, 1978
SfcI	CTRYAG	2 cut(s)	402, 931
SfuI	TTCGAA	2 cut(s)	1179, 1753
SinI	GGWCC	3 cut(s)	1315, 1890, 2262
SmiMI	CAYNNNNRTG	3 cut(s)	353, 359, 765
SmlI	CTYRAG	2 cut(s)	1555, 1834
SmoI	CTYRAG	2 cut(s)	1555, 1834
Sse9I	AATT	6 cut(s)	66, 1070, 1573, 2161, 2176, 2217
SseBI	AGGCCT	1 cut(s)	663
SsiI	CCGC	6 cut(s)	1163, 1218, 1226, 1540, 1853, 2004
SspI	AATATT	2 cut(s)	27, 63
SspMI	CTAG	4 cut(s)	396, 1026, 1590, 2097
SstI	GAGCTC	2 cut(s)	723, 2084
StuI	AGGCCT	1 cut(s)	663
StyD4I	CCNGG	9 cut(s)	897, 1196, 1317, 1327, 1351, 1427, 1563, 1712, 1791
StyI	CCWWGG	4 cut(s)	937, 1221, 1302, 1893
TaaI	ACNGT	4 cut(s)	996, 1210, 1948, 2193
TaiI	ACGT	1 cut(s)	1444
TaqI	TCGA	6 cut(s)	890, 1179, 1368, 1381, 1521, 1753
TaqII	GACCGA	1 cut(s)	1706
TasI	AATT	6 cut(s)	66, 1070, 1573, 2161, 2176, 2217
TatI	WGTACW	4 cut(s)	1022, 1212, 1626, 2130
TauI	GCSGC	1 cut(s)	1229
TfiI	GAWTC	6 cut(s)	55, 608, 1282, 1363, 1760, 1801
Tru1I	TTAA	3 cut(s)	65, 1584, 1835
Tru9I	TTAA	3 cut(s)	65, 1584, 1835
TscAI	CASTG	4 cut(s)	355, 496, 1001, 1213
TseFI	GTSAC	1 cut(s)	1288
TseI	GCWGC	8 cut(s)	379, 404, 821, 913, 933, 1202, 1818, 2032
Tsp45I	GTSAC	1 cut(s)	1288
TspGWI	ACGGA	2 cut(s)	1456, 1494
TspRI	CASTG	4 cut(s)	355, 496, 1001, 1213
Vha464I	CTTAAG	1 cut(s)	1834
VpaK11BI	GGWCC	3 cut(s)	1315, 1890, 2262
VspI	ATTAAT	1 cut(s)	65
XapI	RAATTY	2 cut(s)	1070, 2176
XceI	RCATGY	1 cut(s)	1849
XcmI	CCANNNNNNNNNTGG	2 cut(s)	767, 1934
XmiI	GTMKAC	1 cut(s)	1136
XmnI	GAANNNNTTC	2 cut(s)	1494, 1759
XspI	CTAG	4 cut(s)	396, 1026, 1590, 2097
ZrmI	AGTACT	2 cut(s)	1024, 2132

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.