Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0007311

Physical Location & Seq

Genomic Coordinates Reverse (-)

2595219 .. 2596771

Gene Structure 1553 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0036600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGGTTCACGTCGTGTTCTATCGGAACTATGGCAAGACGTTTAAGAAGCCCCGTAGGCCTTATGAGAAGGAGCGTTTGGATGCTGAGCTGAAGCTGGTGGGAGAGTATGGGCTACGTTGCAAGAGAGAGCTCTGGAGGGTTCAGTATGCTCTCAGCCGAATCCGTAACAATGCAAGGATGCTTCTGACCCTTGACGAGAAGAACCCTCGTCGGATCTTTGAGGGTGAGGCGCTTCTTCGGAGGATGAACCGTTATGGGCTTTTGGACGAGGGGCAGAACAAGCTTGATTATGTTTTGGCTTTGACCGTGGAGAACTTCCTTGAGCGTCGCCTGCAGACAGTTGTGTTTAAGAAGGGTTTGGCAAAGTCCATTCATCATGCCCGTGTGCTCATCAGGCAGAGGCATATCAGAGTCGGAAGGCAAGTGGTGAACATTCCATCCTTCATGGTCAGATGTGATTCCGAGAAGCACATTGATTTTGCTATTACAAGTCCATTGGGTGGCGGAGGTCCAGGTAGAGTCAAGAGAAGGAACTTGAAGGCAGCTGCCAAGAAGGCTTCTGGTGGAGGAGATGATGAAGAGGATGAGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005911 GO:0006355 GO:0008150 GO:0009506 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030054 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0055044 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox_KN POX

Protein Analysis

197

Amino Acids

22.93

Weight (kDa)

10.17

Isoelectric Point (pI)

52.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S4	PF00163	8 - 108	4.9e-14	Ribosomal protein S4/S9 N-terminal domain
S4	PF01479	109 - 151	3.3e-13	S4 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007311)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G41410
fragaria_vesca	FvH4_5g02960 FvH4_5g02960 FvH4_5g02960 FvH4_5g02960
malus_domestica	MD06G1088700.v1.1 MD14G1109800.v1.1
prunus_persica	Prupe.5G104600_v2.0.a1 Prupe.5G104600_v2.0.a1
pyrus_communis	pycom06g08460 pycom14g10390
rosa_chinensis	RchiOBHm_Chr7g0196921
rosa_laevigata	RLG00000003980
rosa_multiflora	Rmu_sc0001083.1_g000011
rosa_roxburghii	Rroxscaffold_3G00258870
rosa_rugosa	Rorug07G0036500 Rorug07G0036600 Rorug07G0036700 Rorug07G0036700 Rorug07G0036800
rosa_samantha	Rh7AG161000 Rh7BG163200 Rh7CG169300 Rh7DG162600
rosa_wichuraiana	Rw7G014090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	500
AciI	CCGC	1 cut(s)	504
AclWI	GGATC	1 cut(s)	221
AcuI	CTGAAG	1 cut(s)	110
AdeI	CACNNNGTG	1 cut(s)	13
AfiI	CCNNNNNNNGG	1 cut(s)	500
AgsI	TTSAA	1 cut(s)	538
AjiI	CACGTC	1 cut(s)	10
AjnI	CCWGG	1 cut(s)	511
AjuI	GAANNNNNNNTTGG	2 cut(s)	59, 91
AloI	GAACNNNNNNTCC	2 cut(s)	422, 454
AluBI	AGCT	5 cut(s)	88, 94, 130, 283, 545
AluI	AGCT	5 cut(s)	88, 94, 130, 283, 545
Alw21I	GWGCWC	2 cut(s)	132, 390
AlwI	GGATC	1 cut(s)	221
AoxI	GGCC	1 cut(s)	56
ApeKI	GCWGC	2 cut(s)	542, 545
AspLEI	GCGC	1 cut(s)	232
AspS9I	GGNCC	1 cut(s)	509
AsuHPI	GGTGA	2 cut(s)	236, 439
AvaII	GGWCC	1 cut(s)	509
BanII	GRGCYC	1 cut(s)	132
Bbv12I	GWGCWC	2 cut(s)	132, 390
BbvI	GCAGC	2 cut(s)	532, 554
BccI	CCATC	1 cut(s)	445
BciT130I	CCWGG	1 cut(s)	513
BfmI	CTRYAG	1 cut(s)	332
BfoI	RGCGCY	1 cut(s)	233
BglI	GCCNNNNNGGC	2 cut(s)	55, 554
BisI	GCNGC	2 cut(s)	543, 546
BlpI	GCTNAGC	1 cut(s)	84
BlsI	GCNGC	2 cut(s)	544, 547
Bme1390I	CCNGG	1 cut(s)	513
Bme18I	GGWCC	1 cut(s)	509
BmgBI	CACGTC	1 cut(s)	10
BmgT120I	GGNCC	1 cut(s)	509
BmrFI	CCNGG	1 cut(s)	513
BmsI	GCATC	2 cut(s)	70, 168
BpmI	CTGGAG	1 cut(s)	154
Bpu1102I	GCTNAGC	1 cut(s)	84
BpuEI	CTTGAG	1 cut(s)	341
BsaJI	CCNNGG	1 cut(s)	306
Bsc4I	CCNNNNNNNGG	1 cut(s)	500
BseBI	CCWGG	1 cut(s)	513
BseDI	CCNNGG	1 cut(s)	306
BseGI	GGATG	5 cut(s)	85, 183, 249, 437, 589
BseLI	CCNNNNNNNGG	1 cut(s)	500
BseMII	CTCAG	2 cut(s)	75, 166
BseRI	GAGGAG	1 cut(s)	582
BseXI	GCAGC	2 cut(s)	532, 554
BshFI	GGCC	1 cut(s)	58
BsiHKAI	GWGCWC	2 cut(s)	132, 390
BslI	CCNNNNNNNGG	1 cut(s)	500
BsnI	GGCC	1 cut(s)	58
Bsp1286I	GDGCHC	2 cut(s)	132, 390
Bsp143I	GATC	1 cut(s)	213
Bsp1720I	GCTNAGC	1 cut(s)	84
BspACI	CCGC	1 cut(s)	504
BspANI	GGCC	1 cut(s)	58
BspCNI	CTCAG	2 cut(s)	76, 165
BspMAI	CTGCAG	1 cut(s)	336
BspPI	GGATC	1 cut(s)	221
BssECI	CCNNGG	1 cut(s)	306
BssMI	GATC	1 cut(s)	213
Bst2UI	CCWGG	1 cut(s)	513
Bst4CI	ACNGT	3 cut(s)	251, 307, 340
Bst6I	CTCTTC	1 cut(s)	573
BstC8I	GCNNGC	1 cut(s)	332
BstDEI	CTNAG	2 cut(s)	84, 152
BstDSI	CCRYGG	1 cut(s)	306
BstF5I	GGATG	5 cut(s)	85, 183, 249, 437, 589
BstH2I	RGCGCY	1 cut(s)	233
BstHHI	GCGC	1 cut(s)	232
BstKTI	GATC	1 cut(s)	216
BstMBI	GATC	1 cut(s)	213
BstMWI	GCNNNNNNNGC	5 cut(s)	55, 280, 331, 394, 554
BstNI	CCWGG	1 cut(s)	513
BstSCI	CCNGG	1 cut(s)	511
BstSFI	CTRYAG	1 cut(s)	332
BstV1I	GCAGC	2 cut(s)	532, 554
BstX2I	RGATCY	1 cut(s)	213
BstYI	RGATCY	1 cut(s)	213
BsuRI	GGCC	1 cut(s)	58
BtgI	CCRYGG	1 cut(s)	306
BtrI	CACGTC	1 cut(s)	10
BtsCI	GGATG	5 cut(s)	85, 183, 249, 437, 589
Cac8I	GCNNGC	1 cut(s)	332
CfoI	GCGC	1 cut(s)	232
Cfr13I	GGNCC	1 cut(s)	509
CseI	GACGC	1 cut(s)	314
CviAII	CATG	2 cut(s)	377, 445
DdeI	CTNAG	2 cut(s)	84, 152
DpnI	GATC	1 cut(s)	215
DpnII	GATC	1 cut(s)	213
DraIII	CACNNNGTG	1 cut(s)	13
Eam1104I	CTCTTC	1 cut(s)	573
EarI	CTCTTC	1 cut(s)	573
EciI	GGCGGA	1 cut(s)	519
Ecl136II	GAGCTC	1 cut(s)	130
Eco147I	AGGCCT	1 cut(s)	58
Eco24I	GRGCYC	1 cut(s)	132
Eco47I	GGWCC	1 cut(s)	509
Eco53kI	GAGCTC	1 cut(s)	130
Eco57I	CTGAAG	1 cut(s)	110
EcoICRI	GAGCTC	1 cut(s)	130
EcoRII	CCWGG	1 cut(s)	511
EcoT38I	GRGCYC	1 cut(s)	132
FaeI	CATG	2 cut(s)	380, 448
FaiI	YATR	9 cut(s)	30, 63, 108, 147, 255, 291, 378, 405, 446
FatI	CATG	2 cut(s)	376, 444
Fnu4HI	GCNGC	2 cut(s)	543, 546
FokI	GGATG	4 cut(s)	92, 190, 256, 424
FriOI	GRGCYC	1 cut(s)	132
Fsp4HI	GCNGC	2 cut(s)	543, 546
GlaI	GCGC	1 cut(s)	231
GluI	GCNGC	2 cut(s)	543, 546
GsuI	CTGGAG	1 cut(s)	154
HaeII	RGCGCY	1 cut(s)	233
HaeIII	GGCC	1 cut(s)	58
HgaI	GACGC	1 cut(s)	314
HhaI	GCGC	1 cut(s)	232
Hin1II	CATG	2 cut(s)	380, 448
Hin6I	GCGC	1 cut(s)	230
HinP1I	GCGC	1 cut(s)	230
HindIII	AAGCTT	1 cut(s)	281
HinfI	GANTC	4 cut(s)	159, 411, 458, 519
HphI	GGTGA	2 cut(s)	236, 439
Hpy166II	GTNNAC	2 cut(s)	7, 430
Hpy188I	TCNGA	8 cut(s)	24, 186, 213, 240, 410, 416, 452, 463
Hpy188III	TCNNGA	2 cut(s)	133, 523
Hpy8I	GTNNAC	2 cut(s)	7, 430
Hpy99I	CGWCG	3 cut(s)	14, 213, 330
HpyAV	CCTTC	7 cut(s)	61, 346, 411, 451, 522, 532, 547
HpyCH4III	ACNGT	3 cut(s)	251, 307, 340
HpyCH4IV	ACGT	3 cut(s)	9, 38, 115
HpyCH4V	TGCA	3 cut(s)	120, 173, 334
HpyF10VI	GCNNNNNNNGC	5 cut(s)	55, 280, 331, 394, 554
HpyF3I	CTNAG	2 cut(s)	84, 152
HpySE526I	ACGT	3 cut(s)	9, 38, 115
Hsp92II	CATG	2 cut(s)	380, 448
HspAI	GCGC	1 cut(s)	230
Kzo9I	GATC	1 cut(s)	213
LmnI	GCTCC	1 cut(s)	70
LpnPI	CCDG	7 cut(s)	80, 118, 344, 379, 498, 525, 546
Lsp1109I	GCAGC	2 cut(s)	532, 554
LweI	GCATC	2 cut(s)	70, 168
MaeII	ACGT	3 cut(s)	9, 38, 115
MaeIII	GTNAC	1 cut(s)	164
MalI	GATC	1 cut(s)	215
MboI	GATC	1 cut(s)	213
MboII	GAAGA	3 cut(s)	211, 227, 590
MflI	RGATCY	1 cut(s)	213
MhlI	GDGCHC	2 cut(s)	132, 390
MlyI	GAGTC	2 cut(s)	420, 528
MmeI	TCCRAC	2 cut(s)	191, 394
MseI	TTAA	2 cut(s)	42, 348
MslI	CAYNNNNRTG	1 cut(s)	381
MspA1I	CMGCKG	1 cut(s)	545
MspR9I	CCNGG	1 cut(s)	513
MvaI	CCWGG	1 cut(s)	513
MwoI	GCNNNNNNNGC	5 cut(s)	55, 280, 331, 394, 554
NdeII	GATC	1 cut(s)	213
NlaIII	CATG	2 cut(s)	380, 448
PceI	AGGCCT	1 cut(s)	58
PfeI	GAWTC	2 cut(s)	159, 458
PflMI	CCANNNNNTGG	1 cut(s)	500
PkrI	GCNGC	2 cut(s)	544, 547
PleI	GAGTC	2 cut(s)	419, 527
PpsI	GAGTC	2 cut(s)	419, 527
Psp124BI	GAGCTC	1 cut(s)	132
Psp6I	CCWGG	1 cut(s)	511
PspGI	CCWGG	1 cut(s)	511
PspPI	GGNCC	1 cut(s)	509
PstI	CTGCAG	1 cut(s)	336
PsuI	RGATCY	1 cut(s)	213
PvuII	CAGCTG	1 cut(s)	545
RseI	CAYNNNNRTG	1 cut(s)	381
SacI	GAGCTC	1 cut(s)	132
SaqAI	TTAA	2 cut(s)	42, 348
SatI	GCNGC	2 cut(s)	543, 546
Sau3AI	GATC	1 cut(s)	213
Sau96I	GGNCC	1 cut(s)	509
SchI	GAGTC	2 cut(s)	420, 528
ScrFI	CCNGG	1 cut(s)	513
SduI	GDGCHC	2 cut(s)	132, 390
SfaNI	GCATC	2 cut(s)	70, 168
SfcI	CTRYAG	1 cut(s)	332
SinI	GGWCC	1 cut(s)	509
SmiMI	CAYNNNNRTG	1 cut(s)	381
SmlI	CTYRAG	1 cut(s)	320
SmoI	CTYRAG	1 cut(s)	320
SseBI	AGGCCT	1 cut(s)	58
SsiI	CCGC	1 cut(s)	504
SstI	GAGCTC	1 cut(s)	132
StuI	AGGCCT	1 cut(s)	58
StyD4I	CCNGG	1 cut(s)	511
TaaI	ACNGT	3 cut(s)	251, 307, 340
TaiI	ACGT	3 cut(s)	12, 41, 118
TfiI	GAWTC	2 cut(s)	159, 458
Tru1I	TTAA	2 cut(s)	42, 348
Tru9I	TTAA	2 cut(s)	42, 348
TseI	GCWGC	2 cut(s)	542, 545
TspDTI	ATGAA	4 cut(s)	260, 362, 433, 591
TspGWI	ACGGA	1 cut(s)	152
Van91I	CCANNNNNTGG	1 cut(s)	500
VpaK11BI	GGWCC	1 cut(s)	509

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.