Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0007311

Physical Location & Seq

Genomic Coordinates Forward (+)

54965123 .. 54968180

Gene Structure 3058 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003980

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2019 bp

ATGGCTAGAGAGCTGTGCAGTGAAGATCATAAGTCCTCATCAGTTGGTTTTTGCTACTCGGATGTTTCATCAGCCAATCCAAGCATCCACGCGCACCATCAGAACCAGTTCACAAATCAGATCCAAGGCTTTGATCAGTCAAACCCAGCAGAGATCTTCAACTTGACCACTGGCATGGAGATGATAGGCTTCTCCAAAGGAGCCTTCTTCCCCAAACATGGAGGAGGAGGAGGAGGAGGCCCTTCATCTTCCAAAGGCGCCGGTCATTTCTACCATCCTCATCAGCAAGAGTACAACACAACCGTCATGTCGGAAACGAGCAGCGAAAACCAGAATCTAATGGAGTCTGGCGGGGCTTGGCACCAGGAGAATAGCGACAATAGGTTCCTTGTTGATGATTCTTCATTGAGGTGTGTTTTCCCATGTGAAGGTAATGAGAGGCCAAGCCAAGGCCTCTCACTCTCTCTTAGCTCATCCAATCCCTCTAGTATTGGCTTACAGTCCTTTGAACTCAGGCAGACAAATCATCATCAAGATATTGGGGGCATCAATCAGAGTCATATGATATTGCAAGATGGGTATTTGGGTAAAAGCTCAGGTCTTGGTCACCAATCTCTTCTTCATGAGAATCAAGCTGCAGCTTCTGGGCTTTTCCAGCTCAGAAACTCCAAGTACTTAGGCCCCGCTCAGGAGCTCTTAAATGAGTTCTGTAGCCTCGGAACAAAGCAGACTGATGCTCTTGGAGTTTCAAAGCACAAGTCAAACAAAACCAAACAGTGGGAAGATCAGGATAACAATAATGGCAGTACTTCTTCGTCTTCGAAAAAGCAGTCTTCCCTGTACTCCCTCGAATTCGTTGAATTGCAGAAGAGAAAAACCAGACTGCTTCAAATGCTGGAAGAGGTGGAGAGGAGATACAAGCACTACTGTGATCAGATGAAGGCGGTGGTCTCATCCTTCGAAACCGTGGCAGGGACGGGAGCCGCCACGGTGTACTCGAAGCTGGCTTCGAAAGCCATGTCAAGACATTTCCGGAGCTTGAAAGACGGGATTGTAGCTCAGATTCAGGCCACAAGGAAAGCAATGGGGGAGAAAGACCCGGTGGCTCCCGGAGCAAGCCGAGGCGAGACGCCTCGGCTTCGGATTCTCGATCAAACTCTCCGGCAGCAGAGGGCTTTTCAACAGATGAACATGATGGAGAGTCATCCATGGCGACCCCAACGTGGCCTTCCTGAGAGATCCGTCTCGGTTCTTCGGGCTTGGCTCTTCGAACACTTTCTTCACCCGTACCCAAGCGATGTTGATAAACATATCTTAGCCCGCCAAACGGGTCTCTCAAGAAGCCAGGTATCAAATTGGTTCATTAATGCAAGGGTGAGGCTTTGGAAACCCATGGTTGAAGAAATGTACATGGAGGAAACAAAGGAGCATGAAAACAACCACAACATGTCCTCCTCAGATGGTGTCACTACTGATCATCATGGCGATCCGAGCACGCAGATGACACGACCCGAAGATCAGAAACCGACCCAGGACCAACTCCAACTCGTCCGAATAGACTCGGAGTGCCTCTCGTCCATCATCACAAACAACCCGGGTGAGAAAAGTACTGGCCATGATTCCAGAAGCGGCAAAAGCGCCCTCCAAATGCACCCACAGCATAATTTCGGGCGGGTAACAGATGCATTCGGATCATCGATGGAGCTGGATTTTTCAACTTACAATCATCATCACCAGTCTGGAGGCGCAGTTACTTATGGTAATGAAAACCCGAACCAGAGCTTCAATGGGGGAGGGCATGGTGTGTCATTGACATTAGGGTTGAACCAGCATGGTGGTACTAATGGGGTGAGCTTAGCATTCTCTCCTTCCTCACAGAGCTCTCTCTTCTACCCTAGAGATCACATCGAAGAGTGTCAGCCGGTTCAGTATTCGTCTCTTTTAGACGGCGAAGGCCAGAACAATTTGCCTTACAGAAACTTGATGGGTGCTCAGTTGCTCCATGACTTGGCTGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005911 GO:0006355 GO:0008150 GO:0009506 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030054 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0055044 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox_KN POX

Protein Analysis

673

Amino Acids

74.44

Weight (kDa)

6.4

Isoelectric Point (pI)

55.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
POX	PF07526	220 - 351	7.4e-46	Associated with HOX
Homeobox_KN	PF05920	421 - 460	8.4e-19	Homeobox KN domain
Homeodomain	PF00046	428 - 460	4.4e-06	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007311)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G41410
fragaria_vesca	FvH4_5g02960 FvH4_5g02960 FvH4_5g02960 FvH4_5g02960
malus_domestica	MD06G1088700.v1.1 MD14G1109800.v1.1
prunus_persica	Prupe.5G104600_v2.0.a1 Prupe.5G104600_v2.0.a1
pyrus_communis	pycom06g08460 pycom14g10390
rosa_chinensis	RchiOBHm_Chr7g0196921
rosa_laevigata	RLG00000003980
rosa_multiflora	Rmu_sc0001083.1_g000011
rosa_roxburghii	Rroxscaffold_3G00258870
rosa_rugosa	Rorug07G0036500 Rorug07G0036600 Rorug07G0036700 Rorug07G0036700 Rorug07G0036800
rosa_samantha	Rh7AG161000 Rh7BG163200 Rh7CG169300 Rh7DG162600
rosa_wichuraiana	Rw7G014090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	257, 360
AccB7I	CCANNNNNTGG	2 cut(s)	777, 2008
AccBSI	CCGCTC	1 cut(s)	686
AccII	CGCG	1 cut(s)	92
AccIII	TCCGGA	1 cut(s)	1032
AciI	CCGC	7 cut(s)	351, 684, 944, 984, 1321, 1629, 1672
AclWI	GGATC	4 cut(s)	115, 1233, 1481, 1699
AcoI	YGGCCR	1 cut(s)	1612
AcsI	RAATTY	1 cut(s)	851
AcyI	GRCGYC	2 cut(s)	258, 1130
AfaI	GTAC	9 cut(s)	293, 674, 808, 842, 995, 1289, 1409, 1609, 1840
AfiI	CCNNNNNNNGG	9 cut(s)	218, 428, 449, 688, 777, 972, 1223, 1327, 2008
AflIII	ACRYGT	1 cut(s)	1446
AjnI	CCWGG	3 cut(s)	363, 1344, 1530
AjuI	GAANNNNNNNTTGG	6 cut(s)	188, 220, 603, 635, 1212, 1244
AleI	CACNNNNGTG	1 cut(s)	927
Alw21I	GWGCWC	4 cut(s)	696, 1496, 1883, 1993
Alw26I	GTCTC	5 cut(s)	955, 1121, 1249, 1337, 1941
AlwI	GGATC	4 cut(s)	115, 1233, 1481, 1699
AlwNI	CAGNNNCTG	1 cut(s)	644
Ama87I	CYCGRG	1 cut(s)	1594
Aor13HI	TCCGGA	1 cut(s)	1032
AoxI	GGCC	8 cut(s)	238, 440, 451, 679, 1068, 1225, 1612, 1954
ApeKI	GCWGC	4 cut(s)	321, 635, 638, 1165
ApoI	RAATTY	1 cut(s)	851
ArsI	GACNNNNNNTTYG	6 cut(s)	743, 775, 815, 847, 1004, 1036
AseI	ATTAAT	1 cut(s)	1365
Asp700I	GAANNNNTTC	2 cut(s)	107, 1275
AspLEI	GCGC	4 cut(s)	94, 260, 1640, 1748
AspS9I	GGNCC	3 cut(s)	239, 680, 1534
AsuC2I	CCSGG	4 cut(s)	1100, 1110, 1595, 1596
AsuHPI	GGTGA	6 cut(s)	599, 1274, 1387, 1610, 1724, 1861
AsuII	TTCGAA	4 cut(s)	821, 960, 1010, 1269
AvaI	CYCGRG	1 cut(s)	1594
AvaII	GGWCC	1 cut(s)	1534
BalI	TGGCCA	1 cut(s)	1614
BanI	GGYRCC	2 cut(s)	257, 360
BanII	GRGCYC	2 cut(s)	696, 1883
BbsI	GAAGAC	2 cut(s)	810, 825
Bbv12I	GWGCWC	4 cut(s)	696, 1496, 1883, 1993
BbvI	GCAGC	4 cut(s)	333, 622, 650, 1177
BccI	CCATC	8 cut(s)	105, 282, 569, 1189, 1454, 1586, 1693, 1978
BceAI	ACGGC	1 cut(s)	1963
BciT130I	CCWGG	3 cut(s)	365, 1346, 1532
BclI	TGATCA	3 cut(s)	133, 931, 1474
BcnI	CCSGG	4 cut(s)	1100, 1110, 1595, 1596
BcoDI	GTCTC	5 cut(s)	955, 1121, 1249, 1337, 1941
BfaI	CTAG	4 cut(s)	6, 486, 1896, 2017
BfmI	CTRYAG	2 cut(s)	636, 709
BfoI	RGCGCY	2 cut(s)	261, 1641
BglII	AGATCT	1 cut(s)	153
BisI	GCNGC	6 cut(s)	322, 636, 639, 984, 1166, 1630
BlpI	GCTNAGC	1 cut(s)	1855
BlsI	GCNGC	6 cut(s)	323, 637, 640, 985, 1167, 1631
BmcAI	AGTACT	3 cut(s)	674, 808, 1609
Bme1390I	CCNGG	7 cut(s)	365, 1100, 1110, 1346, 1532, 1595, 1596
Bme18I	GGWCC	1 cut(s)	1534
BmeT110I	CYCGRG	1 cut(s)	1594
BmgT120I	GGNCC	3 cut(s)	239, 680, 1534
BmiI	GGNNCC	7 cut(s)	202, 259, 362, 386, 682, 982, 1107
BmrFI	CCNGG	7 cut(s)	365, 1100, 1110, 1346, 1532, 1595, 1596
BmsI	GCATC	4 cut(s)	93, 555, 724, 1672
BpiI	GAAGAC	2 cut(s)	810, 825
BplI	GAGNNNNNCTC	2 cut(s)	1556, 1588
BpmI	CTGGAG	1 cut(s)	1761
Bpu10I	CCTNAGC	2 cut(s)	595, 687
Bpu1102I	GCTNAGC	1 cut(s)	1855
Bpu14I	TTCGAA	4 cut(s)	821, 960, 1010, 1269
BpuEI	CTTGAG	1 cut(s)	1321
BpuMI	CCSGG	4 cut(s)	1100, 1110, 1595, 1596
Bsa29I	ATCGAT	1 cut(s)	1697
BsaHI	GRCGYC	2 cut(s)	258, 1130
BsaI	GGTCTC	2 cut(s)	955, 1337
BsaWI	WCCGGW	1 cut(s)	1032
BsaXI	ACNNNNNCTCC	4 cut(s)	1436, 1466, 1734, 1764
Bsc4I	CCNNNNNNNGG	9 cut(s)	218, 428, 449, 688, 777, 972, 1223, 1327, 2008
Bse118I	RCCGGY	2 cut(s)	260, 1921
Bse1I	ACTGG	4 cut(s)	106, 175, 1615, 1735
Bse3DI	GCAATG	1 cut(s)	1089
BseAI	TCCGGA	1 cut(s)	1032
BseBI	CCWGG	3 cut(s)	365, 1346, 1532
BseCI	ATCGAT	1 cut(s)	1697
BseGI	GGATG	6 cut(s)	67, 84, 274, 473, 953, 1204
BseLI	CCNNNNNNNGG	9 cut(s)	218, 428, 449, 688, 777, 972, 1223, 1327, 2008
BseMI	GCAATG	1 cut(s)	1089
BseMII	CTCAG	8 cut(s)	526, 609, 673, 701, 1073, 1224, 1470, 2006
BseNI	ACTGG	4 cut(s)	106, 175, 1615, 1735
BseRI	GAGGAG	7 cut(s)	237, 240, 243, 246, 249, 925, 1444
BseXI	GCAGC	4 cut(s)	333, 622, 650, 1177
BseYI	CCCAGC	1 cut(s)	145
BsgI	GTGCAG	1 cut(s)	37
Bsh1236I	CGCG	1 cut(s)	92
BshFI	GGCC	8 cut(s)	240, 442, 453, 681, 1070, 1227, 1614, 1956
BshNI	GGYRCC	2 cut(s)	257, 360
BshVI	ATCGAT	1 cut(s)	1697
BsiHKAI	GWGCWC	4 cut(s)	696, 1496, 1883, 1993
BsiHKCI	CYCGRG	1 cut(s)	1594
BsiSI	CCGG	7 cut(s)	261, 1033, 1100, 1110, 1162, 1595, 1922
BslFI	GGGAC	1 cut(s)	988
BslI	CCNNNNNNNGG	9 cut(s)	218, 428, 449, 688, 777, 972, 1223, 1327, 2008
BsmAI	GTCTC	5 cut(s)	955, 1121, 1249, 1337, 1941
BsmBI	CGTCTC	3 cut(s)	1121, 1249, 1941
BsmFI	GGGAC	1 cut(s)	988
BsmI	GAATGC	2 cut(s)	1685, 1859
BsnI	GGCC	8 cut(s)	240, 442, 453, 681, 1070, 1227, 1614, 1956
Bso31I	GGTCTC	2 cut(s)	955, 1337
BsoBI	CYCGRG	1 cut(s)	1594
Bsp119I	TTCGAA	4 cut(s)	821, 960, 1010, 1269
Bsp1286I	GDGCHC	4 cut(s)	696, 1496, 1883, 1993
Bsp13I	TCCGGA	1 cut(s)	1032
Bsp1407I	TGTACA	1 cut(s)	1407
Bsp1720I	GCTNAGC	1 cut(s)	1855
Bsp19I	CCATGG	2 cut(s)	1208, 1392
BspACI	CCGC	7 cut(s)	351, 684, 944, 984, 1321, 1629, 1672
BspANI	GGCC	8 cut(s)	240, 442, 453, 681, 1070, 1227, 1614, 1956
BspCNI	CTCAG	8 cut(s)	525, 608, 672, 700, 1072, 1225, 1469, 2005
BspDI	ATCGAT	1 cut(s)	1697
BspEI	TCCGGA	1 cut(s)	1032
BspFNI	CGCG	1 cut(s)	92
BspHI	TCATGA	1 cut(s)	622
BspLI	GGNNCC	7 cut(s)	202, 259, 362, 386, 682, 982, 1107
BspMAI	CTGCAG	1 cut(s)	640
BspPI	GGATC	4 cut(s)	115, 1233, 1481, 1699
BspQI	GCTCTTC	1 cut(s)	1271
BspT104I	TTCGAA	4 cut(s)	821, 960, 1010, 1269
BspT107I	GGYRCC	2 cut(s)	257, 360
BspTNI	GGTCTC	2 cut(s)	955, 1337
BsrBI	CCGCTC	1 cut(s)	686
BsrDI	GCAATG	1 cut(s)	1089
BsrFI	RCCGGY	2 cut(s)	260, 1921
BsrGI	TGTACA	1 cut(s)	1407
BsrI	ACTGG	4 cut(s)	106, 175, 1615, 1735
BssAI	RCCGGY	2 cut(s)	260, 1921
BssNI	GRCGYC	2 cut(s)	258, 1130
BssT1I	CCWWGG	4 cut(s)	124, 448, 1208, 1392
Bst2UI	CCWGG	3 cut(s)	365, 1346, 1532
Bst4CI	ACNGT	6 cut(s)	304, 501, 777, 929, 967, 991
Bst6I	CTCTTC	6 cut(s)	621, 863, 894, 1271, 1892, 1905
BstACI	GRCGYC	2 cut(s)	258, 1130
BstAUI	TGTACA	1 cut(s)	1407
BstBI	TTCGAA	4 cut(s)	821, 960, 1010, 1269
BstC8I	GCNNGC	5 cut(s)	1005, 1117, 1321, 1496, 2014
BstDSI	CCRYGG	4 cut(s)	966, 987, 1208, 1392
BstEII	GGTNACC	1 cut(s)	605
BstF5I	GGATG	6 cut(s)	67, 84, 274, 473, 953, 1204
BstFNI	CGCG	1 cut(s)	92
BstH2I	RGCGCY	2 cut(s)	261, 1641
BstHHI	GCGC	4 cut(s)	94, 260, 1640, 1748
BstMAI	GTCTC	5 cut(s)	955, 1121, 1249, 1337, 1941
BstMWI	GCNNNNNNNGC	7 cut(s)	655, 892, 1013, 1112, 1491, 1635, 1657
BstNI	CCWGG	3 cut(s)	365, 1346, 1532
BstNSI	RCATGY	1 cut(s)	1450
BstPI	GGTNACC	1 cut(s)	605
BstSCI	CCNGG	7 cut(s)	363, 1098, 1108, 1344, 1530, 1593, 1594
BstSFI	CTRYAG	2 cut(s)	636, 709
BstUI	CGCG	1 cut(s)	92
BstV1I	GCAGC	4 cut(s)	333, 622, 650, 1177
BstV2I	GAAGAC	2 cut(s)	810, 825
BstX2I	RGATCY	3 cut(s)	120, 153, 1238
BstXI	CCANNNNNNTGG	2 cut(s)	175, 1835
BstYI	RGATCY	3 cut(s)	120, 153, 1238
Bsu15I	ATCGAT	1 cut(s)	1697
BsuRI	GGCC	8 cut(s)	240, 442, 453, 681, 1070, 1227, 1614, 1956
BsuTUI	ATCGAT	1 cut(s)	1697
BtgI	CCRYGG	4 cut(s)	966, 987, 1208, 1392
BtgZI	GCGATG	1 cut(s)	1311
BtsCI	GGATG	6 cut(s)	67, 84, 274, 473, 953, 1204
BtsI	GCAGTG	1 cut(s)	25
BtsIMutI	CAGTG	3 cut(s)	25, 168, 782
Cac8I	GCNNGC	5 cut(s)	1005, 1117, 1321, 1496, 2014
CaiI	CAGNNNCTG	1 cut(s)	644
CciI	TCATGA	1 cut(s)	622
CfoI	GCGC	4 cut(s)	94, 260, 1640, 1748
Cfr10I	RCCGGY	2 cut(s)	260, 1921
Cfr13I	GGNCC	3 cut(s)	239, 680, 1534
Cfr9I	CCCGGG	1 cut(s)	1594
ClaI	ATCGAT	1 cut(s)	1697
CseI	GACGC	1 cut(s)	1138
Csp6I	GTAC	9 cut(s)	292, 673, 807, 841, 994, 1288, 1408, 1608, 1839
CviQI	GTAC	9 cut(s)	292, 673, 807, 841, 994, 1288, 1408, 1608, 1839
DinI	GGCGCC	1 cut(s)	259
EaeI	YGGCCR	1 cut(s)	1612
Eam1104I	CTCTTC	6 cut(s)	621, 863, 894, 1271, 1892, 1905
EarI	CTCTTC	6 cut(s)	621, 863, 894, 1271, 1892, 1905
Ecl136II	GAGCTC	2 cut(s)	694, 1881
Eco130I	CCWWGG	4 cut(s)	124, 448, 1208, 1392
Eco147I	AGGCCT	1 cut(s)	453
Eco24I	GRGCYC	2 cut(s)	696, 1883
Eco31I	GGTCTC	2 cut(s)	955, 1337
Eco47I	GGWCC	1 cut(s)	1534
Eco53kI	GAGCTC	2 cut(s)	694, 1881
Eco88I	CYCGRG	1 cut(s)	1594
Eco91I	GGTNACC	1 cut(s)	605
EcoICRI	GAGCTC	2 cut(s)	694, 1881
EcoO109I	RGGNCCY	2 cut(s)	239, 680
EcoO65I	GGTNACC	1 cut(s)	605
EcoRI	GAATTC	1 cut(s)	851
EcoRII	CCWGG	3 cut(s)	363, 1344, 1530
EcoT14I	CCWWGG	4 cut(s)	124, 448, 1208, 1392
EcoT22I	ATGCAT	1 cut(s)	1687
EcoT38I	GRGCYC	2 cut(s)	696, 1883
EgeI	GGCGCC	1 cut(s)	259
EheI	GGCGCC	1 cut(s)	259
ErhI	CCWWGG	4 cut(s)	124, 448, 1208, 1392
Esp3I	CGTCTC	3 cut(s)	1121, 1249, 1941
FaqI	GGGAC	1 cut(s)	988
FauI	CCCGC	4 cut(s)	344, 691, 1328, 1665
FauNDI	CATATG	1 cut(s)	561
FbaI	TGATCA	3 cut(s)	133, 931, 1474
Fnu4HI	GCNGC	6 cut(s)	322, 636, 639, 984, 1166, 1630
FokI	GGATG	6 cut(s)	71, 74, 261, 460, 940, 1191
FriOI	GRGCYC	2 cut(s)	696, 1883
Fsp4HI	GCNGC	6 cut(s)	322, 636, 639, 984, 1166, 1630
FspBI	CTAG	4 cut(s)	6, 486, 1896, 2017
GlaI	GCGC	4 cut(s)	93, 259, 1639, 1747
GluI	GCNGC	6 cut(s)	322, 636, 639, 984, 1166, 1630
GsaI	CCCAGC	1 cut(s)	149
GsuI	CTGGAG	1 cut(s)	1761
HaeII	RGCGCY	2 cut(s)	261, 1641
HaeIII	GGCC	8 cut(s)	240, 442, 453, 681, 1070, 1227, 1614, 1956
HapII	CCGG	7 cut(s)	261, 1033, 1100, 1110, 1162, 1595, 1922
HgaI	GACGC	1 cut(s)	1138
HhaI	GCGC	4 cut(s)	94, 260, 1640, 1748
Hin1I	GRCGYC	2 cut(s)	258, 1130
Hin6I	GCGC	4 cut(s)	92, 258, 1638, 1746
HinP1I	GCGC	4 cut(s)	92, 258, 1638, 1746
HpaII	CCGG	7 cut(s)	261, 1033, 1100, 1110, 1162, 1595, 1922
HphI	GGTGA	6 cut(s)	599, 1274, 1387, 1610, 1724, 1861
Hpy166II	GTNNAC	2 cut(s)	111, 994
Hpy8I	GTNNAC	2 cut(s)	111, 994
HpyAV	CCTTC	8 cut(s)	214, 252, 422, 934, 967, 1238, 1878, 1946
HpyCH4III	ACNGT	6 cut(s)	304, 501, 777, 929, 967, 991
HpyCH4IV	ACGT	1 cut(s)	1222
HpyCH4V	TGCA	7 cut(s)	18, 571, 638, 865, 1370, 1651, 1685
HpyF10VI	GCNNNNNNNGC	7 cut(s)	655, 892, 1013, 1112, 1491, 1635, 1657
HpySE526I	ACGT	1 cut(s)	1222
Hsp92I	GRCGYC	2 cut(s)	258, 1130
HspAI	GCGC	4 cut(s)	92, 258, 1638, 1746
KasI	GGCGCC	1 cut(s)	257
Kpn2I	TCCGGA	1 cut(s)	1032
Ksp22I	TGATCA	3 cut(s)	133, 931, 1474
LguI	GCTCTTC	1 cut(s)	1271
LmnI	GCTCC	9 cut(s)	200, 691, 980, 1035, 1111, 1112, 1426, 1702, 2004
Lsp1109I	GCAGC	4 cut(s)	333, 622, 650, 1177
LweI	GCATC	4 cut(s)	93, 555, 724, 1672
MaeI	CTAG	4 cut(s)	6, 486, 1896, 2017
MaeII	ACGT	1 cut(s)	1222
MaeIII	GTNAC	4 cut(s)	605, 1465, 1675, 1750
MbiI	CCGCTC	1 cut(s)	686
MflI	RGATCY	3 cut(s)	120, 153, 1238
MhlI	GDGCHC	4 cut(s)	696, 1496, 1883, 1993
MlsI	TGGCCA	1 cut(s)	1614
MluCI	AATT	5 cut(s)	851, 860, 1354, 1663, 1963
MluNI	TGGCCA	1 cut(s)	1614
Mly113I	GGCGCC	1 cut(s)	258
MlyI	GAGTC	4 cut(s)	353, 565, 1210, 1553
MmeI	TCCRAC	2 cut(s)	291, 1567
Mox20I	TGGCCA	1 cut(s)	1614
Mph1103I	ATGCAT	1 cut(s)	1687
MroI	TCCGGA	1 cut(s)	1032
MroXI	GAANNNNTTC	2 cut(s)	107, 1275
MscI	TGGCCA	1 cut(s)	1614
MseI	TTAA	2 cut(s)	698, 1365
MslI	CAYNNNNRTG	5 cut(s)	173, 179, 409, 927, 1499
Msp20I	TGGCCA	1 cut(s)	1614
MspI	CCGG	7 cut(s)	261, 1033, 1100, 1110, 1162, 1595, 1922
MspR9I	CCNGG	7 cut(s)	365, 1100, 1110, 1346, 1532, 1595, 1596
Mva1269I	GAATGC	2 cut(s)	1685, 1859
MvaI	CCWGG	3 cut(s)	365, 1346, 1532
MvnI	CGCG	1 cut(s)	92
MwoI	GCNNNNNNNGC	7 cut(s)	655, 892, 1013, 1112, 1491, 1635, 1657
NarI	GGCGCC	1 cut(s)	258
NciI	CCSGG	4 cut(s)	1100, 1110, 1595, 1596
NcoI	CCATGG	2 cut(s)	1208, 1392
NdeI	CATATG	1 cut(s)	561
NlaIV	GGNNCC	7 cut(s)	202, 259, 362, 386, 682, 982, 1107
NmeAIII	GCCGAG	2 cut(s)	1114, 1145
NmuCI	GTSAC	2 cut(s)	605, 1465
NsiI	ATGCAT	1 cut(s)	1687
NspI	RCATGY	1 cut(s)	1450
NspV	TTCGAA	4 cut(s)	821, 960, 1010, 1269
OliI	CACNNNNGTG	1 cut(s)	927
PagI	TCATGA	1 cut(s)	622
PceI	AGGCCT	1 cut(s)	453
PciI	ACATGT	1 cut(s)	1446
PciSI	GCTCTTC	1 cut(s)	1271
PcsI	WCGNNNNNNNCGW	1 cut(s)	995
PctI	GAATGC	2 cut(s)	1685, 1859
PdmI	GAANNNNTTC	2 cut(s)	107, 1275
PfeI	GAWTC	6 cut(s)	334, 398, 628, 1063, 1144, 1619
PflMI	CCANNNNNTGG	2 cut(s)	777, 2008
PfoI	TCCNGGA	1 cut(s)	1108
PkrI	GCNGC	6 cut(s)	323, 637, 640, 985, 1167, 1631
PleI	GAGTC	4 cut(s)	352, 564, 1209, 1553
PluTI	GGCGCC	1 cut(s)	261
PpsI	GAGTC	4 cut(s)	352, 564, 1209, 1553
PscI	ACATGT	1 cut(s)	1446
PshBI	ATTAAT	1 cut(s)	1365
Psp124BI	GAGCTC	2 cut(s)	696, 1883
Psp6I	CCWGG	3 cut(s)	363, 1344, 1530
PspEI	GGTNACC	1 cut(s)	605
PspFI	CCCAGC	1 cut(s)	145
PspGI	CCWGG	3 cut(s)	363, 1344, 1530
PspN4I	GGNNCC	7 cut(s)	202, 259, 362, 386, 682, 982, 1107
PspPI	GGNCC	3 cut(s)	239, 680, 1534
PstI	CTGCAG	1 cut(s)	640
PstNI	CAGNNNCTG	1 cut(s)	644
PsuI	RGATCY	3 cut(s)	120, 153, 1238
RsaI	GTAC	9 cut(s)	293, 674, 808, 842, 995, 1289, 1409, 1609, 1840
RsaNI	GTAC	9 cut(s)	292, 673, 807, 841, 994, 1288, 1408, 1608, 1839
RseI	CAYNNNNRTG	5 cut(s)	173, 179, 409, 927, 1499
SacI	GAGCTC	2 cut(s)	696, 1883
SapI	GCTCTTC	1 cut(s)	1271
SaqAI	TTAA	2 cut(s)	698, 1365
SatI	GCNGC	6 cut(s)	322, 636, 639, 984, 1166, 1630
Sau96I	GGNCC	3 cut(s)	239, 680, 1534
ScaI	AGTACT	3 cut(s)	674, 808, 1609
SchI	GAGTC	4 cut(s)	353, 565, 1210, 1553
ScrFI	CCNGG	7 cut(s)	365, 1100, 1110, 1346, 1532, 1595, 1596
SduI	GDGCHC	4 cut(s)	696, 1496, 1883, 1993
SfaNI	GCATC	4 cut(s)	93, 555, 724, 1672
SfcI	CTRYAG	2 cut(s)	636, 709
SfoI	GGCGCC	1 cut(s)	259
SfuI	TTCGAA	4 cut(s)	821, 960, 1010, 1269
SinI	GGWCC	1 cut(s)	1534
SmaI	CCCGGG	1 cut(s)	1596
SmiMI	CAYNNNNRTG	5 cut(s)	173, 179, 409, 927, 1499
SmlI	CTYRAG	1 cut(s)	1336
SmoI	CTYRAG	1 cut(s)	1336
Sse9I	AATT	5 cut(s)	851, 860, 1354, 1663, 1963
SseBI	AGGCCT	1 cut(s)	453
SsiI	CCGC	7 cut(s)	351, 684, 944, 984, 1321, 1629, 1672
SspDI	GGCGCC	1 cut(s)	257
SspMI	CTAG	4 cut(s)	6, 486, 1896, 2017
SstI	GAGCTC	2 cut(s)	696, 1883
StuI	AGGCCT	1 cut(s)	453
StyD4I	CCNGG	7 cut(s)	363, 1098, 1108, 1344, 1530, 1593, 1594
StyI	CCWWGG	4 cut(s)	124, 448, 1208, 1392
TaaI	ACNGT	6 cut(s)	304, 501, 777, 929, 967, 991
TaiI	ACGT	1 cut(s)	1225
TaqI	TCGA	9 cut(s)	821, 849, 960, 998, 1010, 1149, 1269, 1697, 1908
TasI	AATT	5 cut(s)	851, 860, 1354, 1663, 1963
TatI	WGTACW	7 cut(s)	291, 672, 806, 840, 993, 1407, 1607
TauI	GCSGC	2 cut(s)	986, 1632
TfiI	GAWTC	6 cut(s)	334, 398, 628, 1063, 1144, 1619
Tru1I	TTAA	2 cut(s)	698, 1365
Tru9I	TTAA	2 cut(s)	698, 1365
TscAI	CASTG	3 cut(s)	25, 175, 782
TseFI	GTSAC	2 cut(s)	605, 1465
TseI	GCWGC	4 cut(s)	321, 635, 638, 1165
Tsp45I	GTSAC	2 cut(s)	605, 1465
TspDTI	ATGAA	9 cut(s)	57, 234, 393, 611, 953, 1202, 1351, 1446, 1779
TspGWI	ACGGA	1 cut(s)	1231
TspMI	CCCGGG	1 cut(s)	1594
TspRI	CASTG	3 cut(s)	25, 175, 782
Van91I	CCANNNNNTGG	2 cut(s)	777, 2008
VpaK11BI	GGWCC	1 cut(s)	1534
VspI	ATTAAT	1 cut(s)	1365
XapI	RAATTY	1 cut(s)	851
XceI	RCATGY	1 cut(s)	1450
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1784, 2009
XmaI	CCCGGG	1 cut(s)	1594
XmnI	GAANNNNTTC	2 cut(s)	107, 1275
XspI	CTAG	4 cut(s)	6, 486, 1896, 2017
ZrmI	AGTACT	3 cut(s)	674, 808, 1609
Zsp2I	ATGCAT	1 cut(s)	1687

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.