Rorug07G0036800
ERF Family

Histidine phosphatase superfamily (branch 1)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0007311
Physical Location & Seq
Reverse (-)
2603123 .. 2604983
1861 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0036800.1

Sequence Viewer

Length: 507 bp
ATGGGATCTGGTGCTGGAAGTTTCCTCAAAGTTCTCCTTAAAAACTTCGATGTTCTTGCTGGGCCTGTGGTTAGTTTGGTTTACCCACTGTATGCCTCAATTCGGGCTATAGAGACCAAATCTCCAACTGATGACCGCCAATGGCTTACGTATTGGATTCTCTATTCTATGATTACACTCATTGAGCTCACCTTTGCTAAACTTATTGAGTGGATCCCAGTCTGGTCATATGCCAAGCTGATCATGACTTGTTGGCTGGTCATCCCATACTTCAGTGGTGCTGCATATGTCTACGAACACTATGTCAGGCCGTTTTTCCTCAACCCACAGACAATCAACATTTGGTACGTTCCAAAGAAGAAGGACAAGCCGGATGATATTCTAACAGCTGCAGAGAAGTACATTGAAGAGAATGGTACTGAAGCATTTGAGAAACTCATTCACAGGTCTGACAAGTCCCAAAGGAGTGGAGGATTCATCTTTGATGATGATCATAAGTACTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
His_Phos_1

Protein Analysis

168

Amino Acids

19.57

Weight (kDa)

6.29

Isoelectric Point (pI)

47.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TB2_DP1_HVA22 PF03134 29 - 105 2.8e-28 TB2/DP1, HVA22 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 291
AciI CCGC 1 cut(s) 136
AclWI GGATC 3 cut(s) 13, 208, 221
AcuI CTGAAG 2 cut(s) 256, 441
AfaI GTAC 4 cut(s) 347, 401, 418, 500
AfiI CCNNNNNNNGG 1 cut(s) 102
AgsI TTSAA 1 cut(s) 407
AluBI AGCT 3 cut(s) 187, 238, 389
AluI AGCT 3 cut(s) 187, 238, 389
Alw21I GWGCWC 1 cut(s) 189
Alw26I GTCTC 1 cut(s) 107
AlwI GGATC 3 cut(s) 13, 208, 221
AoxI GGCC 2 cut(s) 62, 308
ApeKI GCWGC 2 cut(s) 281, 389
ArsI GACNNNNNNTTYG 2 cut(s) 288, 320
AspS9I GGNCC 1 cut(s) 62
AsuHPI GGTGA 1 cut(s) 181
BamHI GGATCC 1 cut(s) 213
BanII GRGCYC 1 cut(s) 189
Bbv12I GWGCWC 1 cut(s) 189
BbvI GCAGC 2 cut(s) 268, 376
BceAI ACGGC 1 cut(s) 295
BcgI CGANNNNNNTGC 2 cut(s) 38, 72
BclI TGATCA 2 cut(s) 240, 490
BcoDI GTCTC 1 cut(s) 107
BfmI CTRYAG 2 cut(s) 108, 390
BisI GCNGC 2 cut(s) 282, 390
BlsI GCNGC 2 cut(s) 283, 391
BmcAI AGTACT 1 cut(s) 500
BmgT120I GGNCC 1 cut(s) 62
BmiI GGNNCC 1 cut(s) 215
BmrI ACTGGG 1 cut(s) 212
BmuI ACTGGG 1 cut(s) 212
BsaAI YACGTR 1 cut(s) 150
BsaBI GATNNNNATC 1 cut(s) 489
BsaI GGTCTC 1 cut(s) 107
BsaXI ACNNNNNCTCC 2 cut(s) 106, 136
Bsc4I CCNNNNNNNGG 1 cut(s) 102
Bse1I ACTGG 1 cut(s) 218
Bse8I GATNNNNATC 1 cut(s) 489
BseGI GGATG 2 cut(s) 261, 379
BseJI GATNNNNATC 1 cut(s) 489
BseLI CCNNNNNNNGG 1 cut(s) 102
BseNI ACTGG 1 cut(s) 218
BseXI GCAGC 2 cut(s) 268, 376
BseYI CCCAGC 1 cut(s) 59
BshFI GGCC 2 cut(s) 64, 310
BsiHKAI GWGCWC 1 cut(s) 189
BsiSI CCGG 1 cut(s) 371
BslFI GGGAC 1 cut(s) 442
BslI CCNNNNNNNGG 1 cut(s) 102
BsmAI GTCTC 1 cut(s) 107
BsmFI GGGAC 1 cut(s) 442
BsnI GGCC 2 cut(s) 64, 310
Bso31I GGTCTC 1 cut(s) 107
Bsp1286I GDGCHC 1 cut(s) 189
Bsp143I GATC 4 cut(s) 5, 213, 240, 490
BspACI CCGC 1 cut(s) 136
BspANI GGCC 2 cut(s) 64, 310
BspHI TCATGA 1 cut(s) 243
BspLI GGNNCC 1 cut(s) 215
BspMAI CTGCAG 1 cut(s) 394
BspPI GGATC 3 cut(s) 13, 208, 221
BspTNI GGTCTC 1 cut(s) 107
BsrI ACTGG 1 cut(s) 218
BssMI GATC 4 cut(s) 5, 213, 240, 490
Bst4CI ACNGT 1 cut(s) 90
Bst6I CTCTTC 1 cut(s) 402
BstBAI YACGTR 1 cut(s) 150
BstF5I GGATG 2 cut(s) 261, 379
BstKTI GATC 4 cut(s) 8, 216, 243, 493
BstMAI GTCTC 1 cut(s) 107
BstMBI GATC 4 cut(s) 5, 213, 240, 490
BstSFI CTRYAG 2 cut(s) 108, 390
BstSNI TACGTA 1 cut(s) 150
BstV1I GCAGC 2 cut(s) 268, 376
BstX2I RGATCY 2 cut(s) 5, 213
BstXI CCANNNNNNTGG 1 cut(s) 467
BstYI RGATCY 2 cut(s) 5, 213
BsuRI GGCC 2 cut(s) 64, 310
BtsCI GGATG 2 cut(s) 261, 379
BtsIMutI CAGTG 2 cut(s) 86, 280
CciI TCATGA 1 cut(s) 243
Cfr13I GGNCC 1 cut(s) 62
Csp6I GTAC 4 cut(s) 346, 400, 417, 499
CviAII CATG 1 cut(s) 244
CviJI RGCY 9 cut(s) 64, 107, 145, 187, 238, 256, 310, 370, 389
CviKI_1 RGCY 9 cut(s) 64, 107, 145, 187, 238, 256, 310, 370, 389
CviQI GTAC 4 cut(s) 346, 400, 417, 499
DpnI GATC 4 cut(s) 7, 215, 242, 492
DpnII GATC 4 cut(s) 5, 213, 240, 490
Eam1104I CTCTTC 1 cut(s) 402
EarI CTCTTC 1 cut(s) 402
Ecl136II GAGCTC 1 cut(s) 187
Eco105I TACGTA 1 cut(s) 150
Eco24I GRGCYC 1 cut(s) 189
Eco31I GGTCTC 1 cut(s) 107
Eco53kI GAGCTC 1 cut(s) 187
Eco57I CTGAAG 2 cut(s) 256, 441
EcoICRI GAGCTC 1 cut(s) 187
EcoT38I GRGCYC 1 cut(s) 189
FaeI CATG 1 cut(s) 247
FalI AAGNNNNNCTT 2 cut(s) 21, 53
FaqI GGGAC 1 cut(s) 442
FatI CATG 1 cut(s) 243
FauNDI CATATG 2 cut(s) 229, 286
FbaI TGATCA 2 cut(s) 240, 490
FblI GTMKAC 1 cut(s) 291
Fnu4HI GCNGC 2 cut(s) 282, 390
FokI GGATG 2 cut(s) 248, 386
FriOI GRGCYC 1 cut(s) 189
Fsp4HI GCNGC 2 cut(s) 282, 390
GluI GCNGC 2 cut(s) 282, 390
GsaI CCCAGC 1 cut(s) 63
HaeIII GGCC 2 cut(s) 64, 310
HapII CCGG 1 cut(s) 371
Hin1II CATG 1 cut(s) 247
HinfI GANTC 2 cut(s) 157, 474
HpaII CCGG 1 cut(s) 371
HphI GGTGA 1 cut(s) 181
Hpy166II GTNNAC 2 cut(s) 82, 292
Hpy188I TCNGA 1 cut(s) 451
Hpy188III TCNNGA 1 cut(s) 244
Hpy8I GTNNAC 2 cut(s) 82, 292
HpyAV CCTTC 1 cut(s) 355
HpyCH4III ACNGT 1 cut(s) 90
HpyCH4IV ACGT 2 cut(s) 149, 348
HpyCH4V TGCA 2 cut(s) 284, 392
HpySE526I ACGT 2 cut(s) 149, 348
Hsp92II CATG 1 cut(s) 247
Ksp22I TGATCA 2 cut(s) 240, 490
Kzo9I GATC 4 cut(s) 5, 213, 240, 490
LpnPI CCDG 8 cut(s) 45, 78, 208, 231, 242, 292, 384, 430
Lsp1109I GCAGC 2 cut(s) 268, 376
MaeII ACGT 2 cut(s) 149, 348
MalI GATC 4 cut(s) 7, 215, 242, 492
MboI GATC 4 cut(s) 5, 213, 240, 490
MboII GAAGA 2 cut(s) 370, 419
MflI RGATCY 2 cut(s) 5, 213
MhlI GDGCHC 1 cut(s) 189
MluCI AATT 1 cut(s) 99
MmeI TCCRAC 1 cut(s) 149
MnlI CCTC 4 cut(s) 35, 106, 329, 464
MseI TTAA 1 cut(s) 39
MspA1I CMGCKG 1 cut(s) 389
MspI CCGG 1 cut(s) 371
NdeI CATATG 2 cut(s) 229, 286
NdeII GATC 4 cut(s) 5, 213, 240, 490
NlaIII CATG 1 cut(s) 247
NlaIV GGNNCC 1 cut(s) 215
PagI TCATGA 1 cut(s) 243
PfeI GAWTC 2 cut(s) 157, 474
PkrI GCNGC 2 cut(s) 283, 391
Ppu21I YACGTR 1 cut(s) 150
Psp124BI GAGCTC 1 cut(s) 189
PspFI CCCAGC 1 cut(s) 59
PspN4I GGNNCC 1 cut(s) 215
PspPI GGNCC 1 cut(s) 62
PstI CTGCAG 1 cut(s) 394
PsuI RGATCY 2 cut(s) 5, 213
PvuII CAGCTG 1 cut(s) 389
RsaI GTAC 4 cut(s) 347, 401, 418, 500
RsaNI GTAC 4 cut(s) 346, 400, 417, 499
SacI GAGCTC 1 cut(s) 189
SaqAI TTAA 1 cut(s) 39
SatI GCNGC 2 cut(s) 282, 390
Sau3AI GATC 4 cut(s) 5, 213, 240, 490
Sau96I GGNCC 1 cut(s) 62
ScaI AGTACT 1 cut(s) 500
SduI GDGCHC 1 cut(s) 189
SetI ASST 7 cut(s) 152, 189, 194, 240, 351, 391, 449
SfcI CTRYAG 2 cut(s) 108, 390
SnaBI TACGTA 1 cut(s) 150
Sse9I AATT 1 cut(s) 99
SsiI CCGC 1 cut(s) 136
SstI GAGCTC 1 cut(s) 189
TaaI ACNGT 1 cut(s) 90
TaiI ACGT 2 cut(s) 152, 351
TaqI TCGA 1 cut(s) 48
TasI AATT 1 cut(s) 99
TatI WGTACW 2 cut(s) 399, 498
TfiI GAWTC 2 cut(s) 157, 474
Tru1I TTAA 1 cut(s) 39
Tru9I TTAA 1 cut(s) 39
TscAI CASTG 2 cut(s) 93, 280
TseI GCWGC 2 cut(s) 281, 389
TspDTI ATGAA 1 cut(s) 466
TspRI CASTG 2 cut(s) 93, 280
XmiI GTMKAC 1 cut(s) 291
ZrmI AGTACT 1 cut(s) 500
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.