Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0007311

Physical Location & Seq

Genomic Coordinates Reverse (-)

14871440 .. 14875092

Gene Structure 3653 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ17616

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2010 bp

ATGGCTAGAGAGCTGTGCAGTGAAGATCATAAGTCCTCATCAGTTGGTTTTTGCTACTCGGATGTTTCATCAGCGAATCCAACCATCCACCATCAGAACCAGTTCACAAATCAGATCCAAGGCTTTGATCAGTCAAACCCAGCAGAGATCTTCAACTTGACCACTGGCATGGAGATGATAGGCTTCTCTAAAGGAGCCTTCTTCTCCAAACATGGAGGAGGAGGAGGAGGACCTTCATCTTCGAAAGGCGCCGATCATTTCTACCATCCTCATCAGCAAGAGTACAACACAACCGGCATGTCGGAAACGAGCAGCGAAAACCAGAATCTAATGGAGTCTGGTGGAGCTTGGCACCAGGAGAACAGCAACAATAGGTTCCTTGTTGATGATTCTTCATTGAGGTGTGTTTTCCCATGTGAAGGTAATGAGAGGCCAAGCCAAGGCCTCTCACTCTCTCTTAGCTCATCCAATCCCTCTAGTATTGGCTTACAGTCCTTTGAACTCAGGCAGACAAATCATCATCAAGATATTGGGAGCATCAATCAGAGTCATATGATATTGCAAGATGGGTATTTGGGTAAAAGCTCAGGTCTTGGTCACCAATCTCTTCTTCATGAGAATCAAGCTGCAGCTTCTGGGCTTTTCCAGCTCAGAAACTCAAAGTACTTAGGCCCAGCTCAGGAGCTCTTAAATGAGTTCTGTAGCCTCGGAACAAAGCAGACTGATGCTCTTGGAGTTTCAAAGCACAAGTCAAACAAAACCAAACAGTGGGACGATCAGGATAATAATAATGGCAGTACTTCTTCGTCTTCGAAAAAGCAGTCTTCCCTGTACTCCCTCGAATTCGTTGAATTGCAGAAGAGAAAAACCAGACTGCTTCAAATGCTGGAAGAGGTGGAGAGGAGATACAAGCACTACTGTGATCAGATGAAGGCTGTGGTCTCATCCTTCGAAACCGTGGCAGGGACTGGAGCCGCCACGGTGTACTCTAAGCTGGCTTCGAAAGCCATGTCAAGACATTTCCGGAGCTTGAAAGACGGGATTGTAGCTCAGATTCAGGCCACAAGGAAAGCAATGGGGGAGAAAGACCCGGTGGCTCCCGGAGCAAGCCGAGGCGAGACGCCTCGGCTTCGGATTCTCGACCAAACTCTCCGGCAGCAGAGAGCTTTTCAACAGATGAACATGATGGAGAGTCATCCATGGCGGCCCCAACGTGGCCTTCCTGAGAGATCCGTCTCGGTTCTTCGGGCTTGGCTCTTCGAACACTTTCTTCACCCGTACCCAAGCGATGTTGATAAACATATCTTAGCCCGCCAAACGGGTCTCTCAAGAAGCCAGGTATCAAATTGGTTCATTAATGCAAGGGTGAGGCTTTGGAAACCCATGGTTGAAGAAATGTACATGGAAGAAACAAAGGAACATGAAAACAACAACAACATGTCCTCCTCAGATGGTGTCACTACTGATCATCATGGCGATCCGAGCACGCAGATGACACGACCCGAAGATCAGAAACCGACCCAGGACCAACTCCAACTCGTCCGAATAGACTCGGAGTGCCTCTCGTCCATCATCACAAACAACCCAGGTGAGAAAAGTACTGGCCATGACTCCAGAAGCGGCAAAAGCGCCCTCCAAATGCACCCACAGCACAATTTCGGGCGGGTAACAGATGCATTCGGATCATCGATGGAGCTGGATTTTTCAACTTACAATCATCATCACCAGTCTGGAGGCGCAGTTACTTATGGTAATGAAAACCCGAACCAGAGCTTCAATGGGGGAGGGCATGGTGTGTCATTGACATTAGGGTTGAACCAGCATGGTGGTACTAATGGGGTGAGCTTAGCATTCTCTCCTTCCTCACAGAGCTCTCTCTTCTACCCTAGAGATCACATCGAAGAGTGTCAGCCGGTTCAGTACTCGTCTCTATTAGACGGCGAAGGCCAGAACAATTTGCCTTACAGAAACTTGATGGGTGCTCAGTTGCTCCATGACTTGGCTGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005911 GO:0006355 GO:0008150 GO:0009506 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030054 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0055044 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox_KN POX

Protein Analysis

669

Amino Acids

74.19

Weight (kDa)

6.37

Isoelectric Point (pI)

53.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
POX	PF07526	217 - 348	5.8e-46	Associated with HOX
Homeobox_KN	PF05920	418 - 457	8.4e-19	Homeobox KN domain
Homeodomain	PF00046	425 - 457	4.4e-06	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007311)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G41410
fragaria_vesca	FvH4_5g02960 FvH4_5g02960 FvH4_5g02960 FvH4_5g02960
malus_domestica	MD06G1088700.v1.1 MD14G1109800.v1.1
prunus_persica	Prupe.5G104600_v2.0.a1 Prupe.5G104600_v2.0.a1
pyrus_communis	pycom06g08460 pycom14g10390
rosa_chinensis	RchiOBHm_Chr7g0196921
rosa_laevigata	RLG00000003980
rosa_multiflora	Rmu_sc0001083.1_g000011
rosa_roxburghii	Rroxscaffold_3G00258870
rosa_rugosa	Rorug07G0036500 Rorug07G0036600 Rorug07G0036700 Rorug07G0036700 Rorug07G0036800
rosa_samantha	Rh7AG161000 Rh7BG163200 Rh7CG169300 Rh7DG162600
rosa_wichuraiana	Rw7G014090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	248, 351
AccB7I	CCANNNNNTGG	2 cut(s)	768, 1999
AccIII	TCCGGA	1 cut(s)	1023
AciI	CCGC	5 cut(s)	975, 1204, 1312, 1620, 1663
AclWI	GGATC	4 cut(s)	109, 1224, 1472, 1690
AcoI	YGGCCR	1 cut(s)	1603
AcsI	RAATTY	1 cut(s)	842
AcyI	GRCGYC	2 cut(s)	249, 1121
AfiI	CCNNNNNNNGG	8 cut(s)	419, 440, 679, 768, 963, 1214, 1318, 1999
AflIII	ACRYGT	1 cut(s)	1437
AjnI	CCWGG	4 cut(s)	354, 1335, 1521, 1585
AjuI	GAANNNNNNNTTGG	4 cut(s)	594, 626, 1203, 1235
AleI	CACNNNNGTG	1 cut(s)	918
Alw21I	GWGCWC	4 cut(s)	687, 1487, 1874, 1984
Alw26I	GTCTC	5 cut(s)	946, 1112, 1240, 1328, 1932
AlwI	GGATC	4 cut(s)	109, 1224, 1472, 1690
AlwNI	CAGNNNCTG	2 cut(s)	635, 968
Aor13HI	TCCGGA	1 cut(s)	1023
AoxI	GGCC	8 cut(s)	431, 442, 670, 1059, 1205, 1216, 1603, 1945
ApeKI	GCWGC	4 cut(s)	312, 626, 629, 1156
ApoI	RAATTY	1 cut(s)	842
ArsI	GACNNNNNNTTYG	6 cut(s)	734, 766, 806, 838, 995, 1027
AseI	ATTAAT	1 cut(s)	1356
Asp700I	GAANNNNTTC	2 cut(s)	101, 1266
AspLEI	GCGC	3 cut(s)	251, 1631, 1739
AspS9I	GGNCC	4 cut(s)	230, 671, 1206, 1525
AsuC2I	CCSGG	2 cut(s)	1091, 1101
AsuHPI	GGTGA	6 cut(s)	590, 1265, 1378, 1601, 1715, 1852
AsuII	TTCGAA	5 cut(s)	242, 812, 951, 1001, 1260
AvaII	GGWCC	2 cut(s)	230, 1525
BalI	TGGCCA	1 cut(s)	1605
BanI	GGYRCC	2 cut(s)	248, 351
BanII	GRGCYC	2 cut(s)	687, 1874
BbsI	GAAGAC	2 cut(s)	801, 816
Bbv12I	GWGCWC	4 cut(s)	687, 1487, 1874, 1984
BbvI	GCAGC	4 cut(s)	324, 613, 641, 1168
BccI	CCATC	9 cut(s)	92, 99, 273, 560, 1180, 1445, 1577, 1684, 1969
BceAI	ACGGC	1 cut(s)	1954
BciT130I	CCWGG	4 cut(s)	356, 1337, 1523, 1587
BclI	TGATCA	3 cut(s)	127, 922, 1465
BcnI	CCSGG	2 cut(s)	1091, 1101
BcoDI	GTCTC	5 cut(s)	946, 1112, 1240, 1328, 1932
BfaI	CTAG	3 cut(s)	6, 477, 1887
BfmI	CTRYAG	2 cut(s)	627, 700
BfoI	RGCGCY	2 cut(s)	252, 1632
BglII	AGATCT	1 cut(s)	147
BisI	GCNGC	7 cut(s)	313, 627, 630, 975, 1157, 1205, 1621
BlpI	GCTNAGC	1 cut(s)	1846
BlsI	GCNGC	7 cut(s)	314, 628, 631, 976, 1158, 1206, 1622
BmcAI	AGTACT	4 cut(s)	665, 799, 1600, 1922
Bme1390I	CCNGG	6 cut(s)	356, 1091, 1101, 1337, 1523, 1587
Bme18I	GGWCC	2 cut(s)	230, 1525
BmgT120I	GGNCC	4 cut(s)	230, 671, 1206, 1525
BmiI	GGNNCC	7 cut(s)	196, 250, 353, 377, 973, 1098, 1208
BmrFI	CCNGG	6 cut(s)	356, 1091, 1101, 1337, 1523, 1587
BmsI	GCATC	3 cut(s)	546, 715, 1663
BpiI	GAAGAC	2 cut(s)	801, 816
BplI	GAGNNNNNCTC	2 cut(s)	1547, 1579
BpmI	CTGGAG	3 cut(s)	990, 1597, 1752
Bpu10I	CCTNAGC	2 cut(s)	586, 678
Bpu1102I	GCTNAGC	1 cut(s)	1846
Bpu14I	TTCGAA	5 cut(s)	242, 812, 951, 1001, 1260
BpuEI	CTTGAG	1 cut(s)	1312
BpuMI	CCSGG	2 cut(s)	1091, 1101
Bsa29I	ATCGAT	1 cut(s)	1688
BsaHI	GRCGYC	2 cut(s)	249, 1121
BsaI	GGTCTC	2 cut(s)	946, 1328
BsaWI	WCCGGW	1 cut(s)	1023
BsaXI	ACNNNNNCTCC	4 cut(s)	1427, 1457, 1725, 1755
Bsc4I	CCNNNNNNNGG	8 cut(s)	419, 440, 679, 768, 963, 1214, 1318, 1999
Bse118I	RCCGGY	2 cut(s)	293, 1912
Bse1I	ACTGG	5 cut(s)	100, 169, 973, 1606, 1726
Bse3DI	GCAATG	1 cut(s)	1080
BseAI	TCCGGA	1 cut(s)	1023
BseBI	CCWGG	4 cut(s)	356, 1337, 1523, 1587
BseCI	ATCGAT	1 cut(s)	1688
BseGI	GGATG	6 cut(s)	67, 84, 265, 464, 944, 1195
BseLI	CCNNNNNNNGG	8 cut(s)	419, 440, 679, 768, 963, 1214, 1318, 1999
BseMI	GCAATG	1 cut(s)	1080
BseMII	CTCAG	8 cut(s)	517, 600, 664, 692, 1064, 1215, 1461, 1997
BseNI	ACTGG	5 cut(s)	100, 169, 973, 1606, 1726
BseRI	GAGGAG	6 cut(s)	231, 234, 237, 240, 916, 1435
BseXI	GCAGC	4 cut(s)	324, 613, 641, 1168
BseYI	CCCAGC	2 cut(s)	139, 673
BsgI	GTGCAG	1 cut(s)	37
BshFI	GGCC	8 cut(s)	433, 444, 672, 1061, 1207, 1218, 1605, 1947
BshNI	GGYRCC	2 cut(s)	248, 351
BshVI	ATCGAT	1 cut(s)	1688
BsiHKAI	GWGCWC	4 cut(s)	687, 1487, 1874, 1984
BsiSI	CCGG	6 cut(s)	294, 1024, 1091, 1101, 1153, 1913
BslFI	GGGAC	2 cut(s)	785, 979
BslI	CCNNNNNNNGG	8 cut(s)	419, 440, 679, 768, 963, 1214, 1318, 1999
BsmAI	GTCTC	5 cut(s)	946, 1112, 1240, 1328, 1932
BsmBI	CGTCTC	3 cut(s)	1112, 1240, 1932
BsmFI	GGGAC	2 cut(s)	785, 979
BsmI	GAATGC	2 cut(s)	1676, 1850
BsnI	GGCC	8 cut(s)	433, 444, 672, 1061, 1207, 1218, 1605, 1947
Bso31I	GGTCTC	2 cut(s)	946, 1328
Bsp119I	TTCGAA	5 cut(s)	242, 812, 951, 1001, 1260
Bsp1286I	GDGCHC	4 cut(s)	687, 1487, 1874, 1984
Bsp13I	TCCGGA	1 cut(s)	1023
Bsp1407I	TGTACA	1 cut(s)	1398
Bsp1720I	GCTNAGC	1 cut(s)	1846
Bsp19I	CCATGG	2 cut(s)	1199, 1383
BspACI	CCGC	5 cut(s)	975, 1204, 1312, 1620, 1663
BspANI	GGCC	8 cut(s)	433, 444, 672, 1061, 1207, 1218, 1605, 1947
BspCNI	CTCAG	8 cut(s)	516, 599, 663, 691, 1063, 1216, 1460, 1996
BspDI	ATCGAT	1 cut(s)	1688
BspEI	TCCGGA	1 cut(s)	1023
BspHI	TCATGA	1 cut(s)	613
BspLI	GGNNCC	7 cut(s)	196, 250, 353, 377, 973, 1098, 1208
BspMAI	CTGCAG	1 cut(s)	631
BspPI	GGATC	4 cut(s)	109, 1224, 1472, 1690
BspQI	GCTCTTC	1 cut(s)	1262
BspT104I	TTCGAA	5 cut(s)	242, 812, 951, 1001, 1260
BspT107I	GGYRCC	2 cut(s)	248, 351
BspTNI	GGTCTC	2 cut(s)	946, 1328
BsrDI	GCAATG	1 cut(s)	1080
BsrFI	RCCGGY	2 cut(s)	293, 1912
BsrGI	TGTACA	1 cut(s)	1398
BsrI	ACTGG	5 cut(s)	100, 169, 973, 1606, 1726
BssAI	RCCGGY	2 cut(s)	293, 1912
BssNI	GRCGYC	2 cut(s)	249, 1121
BssT1I	CCWWGG	4 cut(s)	118, 439, 1199, 1383
Bst2UI	CCWGG	4 cut(s)	356, 1337, 1523, 1587
Bst4CI	ACNGT	5 cut(s)	492, 768, 920, 958, 982
Bst6I	CTCTTC	6 cut(s)	612, 854, 885, 1262, 1883, 1896
BstACI	GRCGYC	2 cut(s)	249, 1121
BstAUI	TGTACA	1 cut(s)	1398
BstBI	TTCGAA	5 cut(s)	242, 812, 951, 1001, 1260
BstC8I	GCNNGC	4 cut(s)	996, 1108, 1312, 1487
BstDSI	CCRYGG	4 cut(s)	957, 978, 1199, 1383
BstEII	GGTNACC	1 cut(s)	596
BstF5I	GGATG	6 cut(s)	67, 84, 265, 464, 944, 1195
BstH2I	RGCGCY	2 cut(s)	252, 1632
BstHHI	GCGC	3 cut(s)	251, 1631, 1739
BstMAI	GTCTC	5 cut(s)	946, 1112, 1240, 1328, 1932
BstMWI	GCNNNNNNNGC	7 cut(s)	646, 883, 1004, 1103, 1482, 1626, 1648
BstNI	CCWGG	4 cut(s)	356, 1337, 1523, 1587
BstNSI	RCATGY	2 cut(s)	301, 1441
BstPI	GGTNACC	1 cut(s)	596
BstSCI	CCNGG	6 cut(s)	354, 1089, 1099, 1335, 1521, 1585
BstSFI	CTRYAG	2 cut(s)	627, 700
BstV1I	GCAGC	4 cut(s)	324, 613, 641, 1168
BstV2I	GAAGAC	2 cut(s)	801, 816
BstX2I	RGATCY	3 cut(s)	114, 147, 1229
BstXI	CCANNNNNNTGG	2 cut(s)	169, 1826
BstYI	RGATCY	3 cut(s)	114, 147, 1229
Bsu15I	ATCGAT	1 cut(s)	1688
BsuRI	GGCC	8 cut(s)	433, 444, 672, 1061, 1207, 1218, 1605, 1947
BsuTUI	ATCGAT	1 cut(s)	1688
BtgI	CCRYGG	4 cut(s)	957, 978, 1199, 1383
BtgZI	GCGATG	1 cut(s)	1302
BtsCI	GGATG	6 cut(s)	67, 84, 265, 464, 944, 1195
BtsI	GCAGTG	1 cut(s)	25
BtsIMutI	CAGTG	3 cut(s)	25, 162, 773
Cac8I	GCNNGC	4 cut(s)	996, 1108, 1312, 1487
CaiI	CAGNNNCTG	2 cut(s)	635, 968
CciI	TCATGA	1 cut(s)	613
CfoI	GCGC	3 cut(s)	251, 1631, 1739
Cfr10I	RCCGGY	2 cut(s)	293, 1912
Cfr13I	GGNCC	4 cut(s)	230, 671, 1206, 1525
ClaI	ATCGAT	1 cut(s)	1688
CseI	GACGC	1 cut(s)	1129
DinI	GGCGCC	1 cut(s)	250
EaeI	YGGCCR	1 cut(s)	1603
Eam1104I	CTCTTC	6 cut(s)	612, 854, 885, 1262, 1883, 1896
EarI	CTCTTC	6 cut(s)	612, 854, 885, 1262, 1883, 1896
Ecl136II	GAGCTC	2 cut(s)	685, 1872
Eco130I	CCWWGG	4 cut(s)	118, 439, 1199, 1383
Eco147I	AGGCCT	1 cut(s)	444
Eco24I	GRGCYC	2 cut(s)	687, 1874
Eco31I	GGTCTC	2 cut(s)	946, 1328
Eco47I	GGWCC	2 cut(s)	230, 1525
Eco53kI	GAGCTC	2 cut(s)	685, 1872
Eco91I	GGTNACC	1 cut(s)	596
EcoICRI	GAGCTC	2 cut(s)	685, 1872
EcoO109I	RGGNCCY	1 cut(s)	230
EcoO65I	GGTNACC	1 cut(s)	596
EcoRI	GAATTC	1 cut(s)	842
EcoRII	CCWGG	4 cut(s)	354, 1335, 1521, 1585
EcoT14I	CCWWGG	4 cut(s)	118, 439, 1199, 1383
EcoT22I	ATGCAT	1 cut(s)	1678
EcoT38I	GRGCYC	2 cut(s)	687, 1874
EgeI	GGCGCC	1 cut(s)	250
EheI	GGCGCC	1 cut(s)	250
ErhI	CCWWGG	4 cut(s)	118, 439, 1199, 1383
Esp3I	CGTCTC	3 cut(s)	1112, 1240, 1932
FaqI	GGGAC	2 cut(s)	785, 979
FauI	CCCGC	2 cut(s)	1319, 1656
FauNDI	CATATG	1 cut(s)	552
FbaI	TGATCA	3 cut(s)	127, 922, 1465
Fnu4HI	GCNGC	7 cut(s)	313, 627, 630, 975, 1157, 1205, 1621
FokI	GGATG	6 cut(s)	71, 74, 252, 451, 931, 1182
FriOI	GRGCYC	2 cut(s)	687, 1874
Fsp4HI	GCNGC	7 cut(s)	313, 627, 630, 975, 1157, 1205, 1621
FspBI	CTAG	3 cut(s)	6, 477, 1887
GlaI	GCGC	3 cut(s)	250, 1630, 1738
GluI	GCNGC	7 cut(s)	313, 627, 630, 975, 1157, 1205, 1621
GsaI	CCCAGC	2 cut(s)	143, 677
GsuI	CTGGAG	3 cut(s)	990, 1597, 1752
HaeII	RGCGCY	2 cut(s)	252, 1632
HaeIII	GGCC	8 cut(s)	433, 444, 672, 1061, 1207, 1218, 1605, 1947
HapII	CCGG	6 cut(s)	294, 1024, 1091, 1101, 1153, 1913
HgaI	GACGC	1 cut(s)	1129
HhaI	GCGC	3 cut(s)	251, 1631, 1739
Hin1I	GRCGYC	2 cut(s)	249, 1121
Hin6I	GCGC	3 cut(s)	249, 1629, 1737
HinP1I	GCGC	3 cut(s)	249, 1629, 1737
HpaII	CCGG	6 cut(s)	294, 1024, 1091, 1101, 1153, 1913
HphI	GGTGA	6 cut(s)	590, 1265, 1378, 1601, 1715, 1852
Hpy166II	GTNNAC	2 cut(s)	105, 985
Hpy8I	GTNNAC	2 cut(s)	105, 985
HpyAV	CCTTC	8 cut(s)	208, 243, 413, 925, 958, 1229, 1869, 1937
HpyCH4III	ACNGT	5 cut(s)	492, 768, 920, 958, 982
HpyCH4IV	ACGT	1 cut(s)	1213
HpyCH4V	TGCA	7 cut(s)	18, 562, 629, 856, 1361, 1642, 1676
HpyF10VI	GCNNNNNNNGC	7 cut(s)	646, 883, 1004, 1103, 1482, 1626, 1648
HpySE526I	ACGT	1 cut(s)	1213
Hsp92I	GRCGYC	2 cut(s)	249, 1121
HspAI	GCGC	3 cut(s)	249, 1629, 1737
KasI	GGCGCC	1 cut(s)	248
Kpn2I	TCCGGA	1 cut(s)	1023
Ksp22I	TGATCA	3 cut(s)	127, 922, 1465
LguI	GCTCTTC	1 cut(s)	1262
Lsp1109I	GCAGC	4 cut(s)	324, 613, 641, 1168
LweI	GCATC	3 cut(s)	546, 715, 1663
MaeI	CTAG	3 cut(s)	6, 477, 1887
MaeII	ACGT	1 cut(s)	1213
MaeIII	GTNAC	4 cut(s)	596, 1456, 1666, 1741
MflI	RGATCY	3 cut(s)	114, 147, 1229
MhlI	GDGCHC	4 cut(s)	687, 1487, 1874, 1984
MlsI	TGGCCA	1 cut(s)	1605
MluCI	AATT	5 cut(s)	842, 851, 1345, 1654, 1954
MluNI	TGGCCA	1 cut(s)	1605
Mly113I	GGCGCC	1 cut(s)	249
MlyI	GAGTC	5 cut(s)	344, 556, 1201, 1544, 1604
MmeI	TCCRAC	3 cut(s)	104, 282, 1558
Mox20I	TGGCCA	1 cut(s)	1605
Mph1103I	ATGCAT	1 cut(s)	1678
MroI	TCCGGA	1 cut(s)	1023
MroXI	GAANNNNTTC	2 cut(s)	101, 1266
MscI	TGGCCA	1 cut(s)	1605
MseI	TTAA	2 cut(s)	689, 1356
MslI	CAYNNNNRTG	5 cut(s)	167, 173, 400, 918, 1490
Msp20I	TGGCCA	1 cut(s)	1605
MspI	CCGG	6 cut(s)	294, 1024, 1091, 1101, 1153, 1913
MspR9I	CCNGG	6 cut(s)	356, 1091, 1101, 1337, 1523, 1587
Mva1269I	GAATGC	2 cut(s)	1676, 1850
MvaI	CCWGG	4 cut(s)	356, 1337, 1523, 1587
MwoI	GCNNNNNNNGC	7 cut(s)	646, 883, 1004, 1103, 1482, 1626, 1648
NarI	GGCGCC	1 cut(s)	249
NciI	CCSGG	2 cut(s)	1091, 1101
NcoI	CCATGG	2 cut(s)	1199, 1383
NdeI	CATATG	1 cut(s)	552
NlaIV	GGNNCC	7 cut(s)	196, 250, 353, 377, 973, 1098, 1208
NmeAIII	GCCGAG	2 cut(s)	1105, 1136
NmuCI	GTSAC	2 cut(s)	596, 1456
NsiI	ATGCAT	1 cut(s)	1678
NspI	RCATGY	2 cut(s)	301, 1441
NspV	TTCGAA	5 cut(s)	242, 812, 951, 1001, 1260
OliI	CACNNNNGTG	1 cut(s)	918
PagI	TCATGA	1 cut(s)	613
PceI	AGGCCT	1 cut(s)	444
PciI	ACATGT	1 cut(s)	1437
PciSI	GCTCTTC	1 cut(s)	1262
PctI	GAATGC	2 cut(s)	1676, 1850
PdmI	GAANNNNTTC	2 cut(s)	101, 1266
PfeI	GAWTC	6 cut(s)	76, 325, 389, 619, 1054, 1135
PflMI	CCANNNNNTGG	2 cut(s)	768, 1999
PfoI	TCCNGGA	1 cut(s)	1099
PkrI	GCNGC	7 cut(s)	314, 628, 631, 976, 1158, 1206, 1622
PleI	GAGTC	5 cut(s)	343, 555, 1200, 1544, 1604
PluTI	GGCGCC	1 cut(s)	252
PpsI	GAGTC	5 cut(s)	343, 555, 1200, 1544, 1604
PpuMI	RGGWCCY	1 cut(s)	230
PscI	ACATGT	1 cut(s)	1437
PshBI	ATTAAT	1 cut(s)	1356
Psp124BI	GAGCTC	2 cut(s)	687, 1874
Psp5II	RGGWCCY	1 cut(s)	230
Psp6I	CCWGG	4 cut(s)	354, 1335, 1521, 1585
PspEI	GGTNACC	1 cut(s)	596
PspFI	CCCAGC	2 cut(s)	139, 673
PspGI	CCWGG	4 cut(s)	354, 1335, 1521, 1585
PspN4I	GGNNCC	7 cut(s)	196, 250, 353, 377, 973, 1098, 1208
PspPI	GGNCC	4 cut(s)	230, 671, 1206, 1525
PspPPI	RGGWCCY	1 cut(s)	230
PstI	CTGCAG	1 cut(s)	631
PstNI	CAGNNNCTG	2 cut(s)	635, 968
PsuI	RGATCY	3 cut(s)	114, 147, 1229
RseI	CAYNNNNRTG	5 cut(s)	167, 173, 400, 918, 1490
SacI	GAGCTC	2 cut(s)	687, 1874
SapI	GCTCTTC	1 cut(s)	1262
SaqAI	TTAA	2 cut(s)	689, 1356
SatI	GCNGC	7 cut(s)	313, 627, 630, 975, 1157, 1205, 1621
Sau96I	GGNCC	4 cut(s)	230, 671, 1206, 1525
ScaI	AGTACT	4 cut(s)	665, 799, 1600, 1922
SchI	GAGTC	5 cut(s)	344, 556, 1201, 1544, 1604
ScrFI	CCNGG	6 cut(s)	356, 1091, 1101, 1337, 1523, 1587
SduI	GDGCHC	4 cut(s)	687, 1487, 1874, 1984
SfaNI	GCATC	3 cut(s)	546, 715, 1663
SfcI	CTRYAG	2 cut(s)	627, 700
SfoI	GGCGCC	1 cut(s)	250
SfuI	TTCGAA	5 cut(s)	242, 812, 951, 1001, 1260
SinI	GGWCC	2 cut(s)	230, 1525
SmiMI	CAYNNNNRTG	5 cut(s)	167, 173, 400, 918, 1490
SmlI	CTYRAG	1 cut(s)	1327
SmoI	CTYRAG	1 cut(s)	1327
Sse9I	AATT	5 cut(s)	842, 851, 1345, 1654, 1954
SseBI	AGGCCT	1 cut(s)	444
SsiI	CCGC	5 cut(s)	975, 1204, 1312, 1620, 1663
SspDI	GGCGCC	1 cut(s)	248
SspMI	CTAG	3 cut(s)	6, 477, 1887
SstI	GAGCTC	2 cut(s)	687, 1874
StuI	AGGCCT	1 cut(s)	444
StyD4I	CCNGG	6 cut(s)	354, 1089, 1099, 1335, 1521, 1585
StyI	CCWWGG	4 cut(s)	118, 439, 1199, 1383
TaaI	ACNGT	5 cut(s)	492, 768, 920, 958, 982
TaiI	ACGT	1 cut(s)	1216
TaqI	TCGA	9 cut(s)	242, 812, 840, 951, 1001, 1140, 1260, 1688, 1899
TasI	AATT	5 cut(s)	842, 851, 1345, 1654, 1954
TatI	WGTACW	8 cut(s)	282, 663, 797, 831, 984, 1398, 1598, 1920
TauI	GCSGC	3 cut(s)	977, 1207, 1623
TfiI	GAWTC	6 cut(s)	76, 325, 389, 619, 1054, 1135
Tru1I	TTAA	2 cut(s)	689, 1356
Tru9I	TTAA	2 cut(s)	689, 1356
TscAI	CASTG	3 cut(s)	25, 169, 773
TseFI	GTSAC	2 cut(s)	596, 1456
TseI	GCWGC	4 cut(s)	312, 626, 629, 1156
Tsp45I	GTSAC	2 cut(s)	596, 1456
TspDTI	ATGAA	9 cut(s)	57, 225, 384, 602, 944, 1193, 1342, 1437, 1770
TspGWI	ACGGA	1 cut(s)	1222
TspRI	CASTG	3 cut(s)	25, 169, 773
Van91I	CCANNNNNTGG	2 cut(s)	768, 1999
VpaK11BI	GGWCC	2 cut(s)	230, 1525
VspI	ATTAAT	1 cut(s)	1356
XapI	RAATTY	1 cut(s)	842
XceI	RCATGY	2 cut(s)	301, 1441
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1775, 2000
XmnI	GAANNNNTTC	2 cut(s)	101, 1266
XspI	CTAG	3 cut(s)	6, 477, 1887
ZrmI	AGTACT	4 cut(s)	665, 799, 1600, 1922
Zsp2I	ATGCAT	1 cut(s)	1678

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.