Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0007311

Physical Location & Seq

Genomic Coordinates Reverse (-)

2594107 .. 2594820

Gene Structure 714 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0036500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGGATTCCATCAACGTCCTCAAAGGCTACGGCAAGGTAAACCCAGAACACCACCTAGAAGTCCAAGCTCAGAAGATCCCCCAACCACCCAAAAGGCCAATCATCACCACTGTGGTCATCTCAGCAATAGTCGGCTTGACCTTTGTGATCGGCCTCATGCTCGCAGCTCTCATCCATGAATCCACTACCGAGCCAATCGACGAGTCCCCATCCCTCTCCAGCTCTGCCGAGTCAACCATCAAAATCGTCTGCAACGTGACTAGGTACCCTGAGTCTTGCTTCACCTCCATTTCCTCCCTCAACAGCTCTCCTAAACCAGACCCAGAGTCCATCCTCAAGCTCTCTCTCCAAGTCTCCATTTCCGAGCTTTCCCATCTCTCTTCGGTGTTGAAGACCATGAACTCCGATGCCGCCATCCGTGACTGCCTGGACCAGGTGGAGGACGCGTTGAGTCAGCTCAATGACTCGGTGTCGGCAATGGTGGTGGGCAAAGCGTTGACTGAGGCAAAGGTCAAGGACGTCCAGACGTGGATAAGTAGTGCGGTGACGGACCAAGAGACGTGCTTGGATGGTTTGGAAGAGATGGGATCAGCGGGTGTTGATGATGTGAAGAAGAAGATGAAGAAGTCGATGGACTTCACCAGCAACAGCTTAGCCATTGTGGCTAATTTCAAGGCCATTCTTGACAGGTTTGGCCACATTCCACTCCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005911 GO:0006355 GO:0008150 GO:0009506 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030054 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0055044 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox_KN POX

Protein Analysis

237

Amino Acids

25.55

Weight (kDa)

5.23

Isoelectric Point (pI)

36.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMEI	PF04043	79 - 220	1.2e-33	Plant invertase/pectin methylesterase inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007311)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G41410
fragaria_vesca	FvH4_5g02960 FvH4_5g02960 FvH4_5g02960 FvH4_5g02960
malus_domestica	MD06G1088700.v1.1 MD14G1109800.v1.1
prunus_persica	Prupe.5G104600_v2.0.a1 Prupe.5G104600_v2.0.a1
pyrus_communis	pycom06g08460 pycom14g10390
rosa_chinensis	RchiOBHm_Chr7g0196921
rosa_laevigata	RLG00000003980
rosa_multiflora	Rmu_sc0001083.1_g000011
rosa_roxburghii	Rroxscaffold_3G00258870
rosa_rugosa	Rorug07G0036500 Rorug07G0036600 Rorug07G0036700 Rorug07G0036700 Rorug07G0036800
rosa_samantha	Rh7AG161000 Rh7BG163200 Rh7CG169300 Rh7DG162600
rosa_wichuraiana	Rw7G014090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	522
Acc65I	GGTACC	1 cut(s)	264
AccB1I	GGYRCC	1 cut(s)	264
AccII	CGCG	1 cut(s)	446
AciI	CCGC	3 cut(s)	411, 542, 593
AclWI	GGATC	2 cut(s)	70, 595
AcoI	YGGCCR	1 cut(s)	694
AcyI	GRCGYC	1 cut(s)	519
AfaI	GTAC	1 cut(s)	266
AfiI	CCNNNNNNNGG	2 cut(s)	433, 439
AflIII	ACRYGT	1 cut(s)	444
AgsI	TTSAA	2 cut(s)	391, 673
AhdI	GACNNNNNGTC	2 cut(s)	325, 469
AjiI	CACGTC	2 cut(s)	528, 561
AjnI	CCWGG	2 cut(s)	426, 432
AleI	CACNNNNGTG	1 cut(s)	110
AluBI	AGCT	8 cut(s)	68, 167, 222, 306, 340, 367, 457, 651
AluI	AGCT	8 cut(s)	68, 167, 222, 306, 340, 367, 457, 651
Alw26I	GTCTC	2 cut(s)	358, 551
AlwI	GGATC	2 cut(s)	70, 595
AoxI	GGCC	4 cut(s)	95, 151, 675, 694
ApeKI	GCWGC	1 cut(s)	164
Asp718I	GGTACC	1 cut(s)	264
AspS9I	GGNCC	2 cut(s)	430, 550
AsuHPI	GGTGA	4 cut(s)	97, 274, 556, 631
AvaII	GGWCC	2 cut(s)	430, 550
BalI	TGGCCA	1 cut(s)	696
BanI	GGYRCC	1 cut(s)	264
BbsI	GAAGAC	1 cut(s)	398
BbvI	GCAGC	1 cut(s)	176
BccI	CCATC	9 cut(s)	17, 217, 245, 338, 381, 422, 563, 577, 625
BceAI	ACGGC	1 cut(s)	46
BciT130I	CCWGG	2 cut(s)	428, 434
BcoDI	GTCTC	2 cut(s)	358, 551
BfaI	CTAG	2 cut(s)	56, 261
BglI	GCCNNNNNGGC	1 cut(s)	662
BisI	GCNGC	2 cut(s)	165, 411
BlpI	GCTNAGC	1 cut(s)	652
BlsI	GCNGC	2 cut(s)	166, 412
Bme1390I	CCNGG	2 cut(s)	428, 434
Bme18I	GGWCC	2 cut(s)	430, 550
BmeRI	GACNNNNNGTC	2 cut(s)	325, 469
BmgBI	CACGTC	2 cut(s)	528, 561
BmgT120I	GGNCC	2 cut(s)	430, 550
BmiI	GGNNCC	1 cut(s)	266
BmrFI	CCNGG	2 cut(s)	428, 434
BmsI	GCATC	1 cut(s)	397
BpiI	GAAGAC	1 cut(s)	398
BpmI	CTGGAG	1 cut(s)	202
Bpu1102I	GCTNAGC	1 cut(s)	652
BpuEI	CTTGAG	1 cut(s)	320
BsaHI	GRCGYC	1 cut(s)	519
BsaXI	ACNNNNNCTCC	2 cut(s)	431, 461
Bsc4I	CCNNNNNNNGG	2 cut(s)	433, 439
Bse3DI	GCAATG	1 cut(s)	483
BseBI	CCWGG	2 cut(s)	428, 434
BseGI	GGATG	5 cut(s)	171, 209, 330, 414, 574
BseLI	CCNNNNNNNGG	2 cut(s)	433, 439
BseMI	GCAATG	1 cut(s)	483
BseMII	CTCAG	4 cut(s)	83, 135, 261, 492
BseXI	GCAGC	1 cut(s)	176
Bsh1236I	CGCG	1 cut(s)	446
BshFI	GGCC	4 cut(s)	97, 153, 677, 696
BshNI	GGYRCC	1 cut(s)	264
BslFI	GGGAC	1 cut(s)	190
BslI	CCNNNNNNNGG	2 cut(s)	433, 439
BsmAI	GTCTC	2 cut(s)	358, 551
BsmBI	CGTCTC	1 cut(s)	551
BsmFI	GGGAC	1 cut(s)	190
BsnI	GGCC	4 cut(s)	97, 153, 677, 696
Bsp143I	GATC	3 cut(s)	75, 147, 587
Bsp1720I	GCTNAGC	1 cut(s)	652
BspACI	CCGC	3 cut(s)	411, 542, 593
BspANI	GGCC	4 cut(s)	97, 153, 677, 696
BspCNI	CTCAG	4 cut(s)	82, 134, 262, 493
BspFNI	CGCG	1 cut(s)	446
BspLI	GGNNCC	1 cut(s)	266
BspPI	GGATC	2 cut(s)	70, 595
BspT107I	GGYRCC	1 cut(s)	264
BsrDI	GCAATG	1 cut(s)	483
BssMI	GATC	3 cut(s)	75, 147, 587
BssNI	GRCGYC	1 cut(s)	519
Bst2UI	CCWGG	2 cut(s)	428, 434
Bst4CI	ACNGT	1 cut(s)	112
Bst6I	CTCTTC	2 cut(s)	385, 573
BstACI	GRCGYC	1 cut(s)	519
BstC8I	GCNNGC	1 cut(s)	162
BstDEI	CTNAG	5 cut(s)	69, 121, 270, 501, 652
BstENI	CCTNNNNNAGG	1 cut(s)	431
BstF5I	GGATG	5 cut(s)	171, 209, 330, 414, 574
BstFNI	CGCG	1 cut(s)	446
BstKTI	GATC	3 cut(s)	78, 150, 590
BstMAI	GTCTC	2 cut(s)	358, 551
BstMBI	GATC	3 cut(s)	75, 147, 587
BstMWI	GCNNNNNNNGC	1 cut(s)	662
BstNI	CCWGG	2 cut(s)	428, 434
BstSCI	CCNGG	2 cut(s)	426, 432
BstUI	CGCG	1 cut(s)	446
BstV1I	GCAGC	1 cut(s)	176
BstV2I	GAAGAC	1 cut(s)	398
BstX2I	RGATCY	1 cut(s)	75
BstYI	RGATCY	1 cut(s)	75
BsuRI	GGCC	4 cut(s)	97, 153, 677, 696
BtrI	CACGTC	2 cut(s)	528, 561
BtsCI	GGATG	5 cut(s)	171, 209, 330, 414, 574
BtsIMutI	CAGTG	1 cut(s)	108
Cac8I	GCNNGC	1 cut(s)	162
Cfr13I	GGNCC	2 cut(s)	430, 550
CseI	GACGC	1 cut(s)	452
CsiI	ACCWGGT	1 cut(s)	432
Csp6I	GTAC	1 cut(s)	265
CspCI	CAANNNNNGTGG	2 cut(s)	465, 500
CviAII	CATG	3 cut(s)	157, 176, 397
CviQI	GTAC	1 cut(s)	265
DdeI	CTNAG	5 cut(s)	69, 121, 270, 501, 652
DpnI	GATC	3 cut(s)	77, 149, 589
DpnII	GATC	3 cut(s)	75, 147, 587
DriI	GACNNNNNGTC	2 cut(s)	325, 469
EaeI	YGGCCR	1 cut(s)	694
Eam1104I	CTCTTC	2 cut(s)	385, 573
Eam1105I	GACNNNNNGTC	2 cut(s)	325, 469
EarI	CTCTTC	2 cut(s)	385, 573
Eco47I	GGWCC	2 cut(s)	430, 550
EcoNI	CCTNNNNNAGG	1 cut(s)	431
EcoRII	CCWGG	2 cut(s)	426, 432
Esp3I	CGTCTC	1 cut(s)	551
FaeI	CATG	3 cut(s)	160, 179, 400
FaiI	YATR	3 cut(s)	158, 177, 398
FaqI	GGGAC	1 cut(s)	190
FatI	CATG	3 cut(s)	156, 175, 396
FauI	CCCGC	1 cut(s)	586
Fnu4HI	GCNGC	2 cut(s)	165, 411
FokI	GGATG	5 cut(s)	158, 196, 317, 401, 581
Fsp4HI	GCNGC	2 cut(s)	165, 411
FspBI	CTAG	2 cut(s)	56, 261
GluI	GCNGC	2 cut(s)	165, 411
GsuI	CTGGAG	1 cut(s)	202
HaeIII	GGCC	4 cut(s)	97, 153, 677, 696
HgaI	GACGC	1 cut(s)	452
Hin1I	GRCGYC	1 cut(s)	519
Hin1II	CATG	3 cut(s)	160, 179, 400
HincII	GTYRAC	2 cut(s)	234, 498
HindII	GTYRAC	2 cut(s)	234, 498
HinfI	GANTC	8 cut(s)	5, 179, 203, 230, 272, 326, 451, 464
HphI	GGTGA	4 cut(s)	97, 274, 556, 631
Hpy166II	GTNNAC	3 cut(s)	40, 234, 498
Hpy188I	TCNGA	3 cut(s)	72, 364, 406
Hpy188III	TCNNGA	2 cut(s)	523, 683
Hpy8I	GTNNAC	3 cut(s)	40, 234, 498
Hpy99I	CGWCG	1 cut(s)	203
HpyCH4III	ACNGT	1 cut(s)	112
HpyCH4IV	ACGT	5 cut(s)	15, 255, 519, 527, 560
HpyCH4V	TGCA	1 cut(s)	252
HpyF10VI	GCNNNNNNNGC	1 cut(s)	662
HpyF3I	CTNAG	5 cut(s)	69, 121, 270, 501, 652
HpySE526I	ACGT	5 cut(s)	15, 255, 519, 527, 560
Hsp92I	GRCGYC	1 cut(s)	519
Hsp92II	CATG	3 cut(s)	160, 179, 400
KpnI	GGTACC	1 cut(s)	268
Kzo9I	GATC	3 cut(s)	75, 147, 587
Lsp1109I	GCAGC	1 cut(s)	176
LweI	GCATC	1 cut(s)	397
MabI	ACCWGGT	1 cut(s)	432
MaeI	CTAG	2 cut(s)	56, 261
MaeII	ACGT	5 cut(s)	15, 255, 519, 527, 560
MaeIII	GTNAC	3 cut(s)	256, 419, 544
MalI	GATC	3 cut(s)	77, 149, 589
MboI	GATC	3 cut(s)	75, 147, 587
MboII	GAAGA	8 cut(s)	85, 372, 403, 590, 622, 625, 628, 634
MflI	RGATCY	1 cut(s)	75
MlsI	TGGCCA	1 cut(s)	696
MluCI	AATT	1 cut(s)	667
MluI	ACGCGT	1 cut(s)	444
MluNI	TGGCCA	1 cut(s)	696
MlyI	GAGTC	6 cut(s)	212, 239, 281, 335, 458, 460
MnlI	CCTC	9 cut(s)	29, 164, 224, 295, 304, 308, 344, 433, 496
Mox20I	TGGCCA	1 cut(s)	696
MscI	TGGCCA	1 cut(s)	696
MslI	CAYNNNNRTG	1 cut(s)	110
Msp20I	TGGCCA	1 cut(s)	696
MspA1I	CMGCKG	1 cut(s)	593
MspR9I	CCNGG	2 cut(s)	428, 434
MvaI	CCWGG	2 cut(s)	428, 434
MvnI	CGCG	1 cut(s)	446
MwoI	GCNNNNNNNGC	1 cut(s)	662
NdeII	GATC	3 cut(s)	75, 147, 587
NlaIII	CATG	3 cut(s)	160, 179, 400
NlaIV	GGNNCC	1 cut(s)	266
NmeAIII	GCCGAG	1 cut(s)	253
NmuCI	GTSAC	3 cut(s)	256, 419, 544
OliI	CACNNNNGTG	1 cut(s)	110
PcsI	WCGNNNNNNNCGW	1 cut(s)	252
PfeI	GAWTC	2 cut(s)	5, 179
PkrI	GCNGC	2 cut(s)	166, 412
PleI	GAGTC	6 cut(s)	211, 238, 280, 334, 458, 459
PpsI	GAGTC	6 cut(s)	211, 238, 280, 334, 458, 459
Psp6I	CCWGG	2 cut(s)	426, 432
PspGI	CCWGG	2 cut(s)	426, 432
PspN4I	GGNNCC	1 cut(s)	266
PspPI	GGNCC	2 cut(s)	430, 550
PsuI	RGATCY	1 cut(s)	75
RsaI	GTAC	1 cut(s)	266
RsaNI	GTAC	1 cut(s)	265
RseI	CAYNNNNRTG	1 cut(s)	110
SatI	GCNGC	2 cut(s)	165, 411
Sau3AI	GATC	3 cut(s)	75, 147, 587
Sau96I	GGNCC	2 cut(s)	430, 550
SchI	GAGTC	6 cut(s)	212, 239, 281, 335, 458, 460
ScrFI	CCNGG	2 cut(s)	428, 434
SexAI	ACCWGGT	1 cut(s)	432
SfaNI	GCATC	1 cut(s)	397
SinI	GGWCC	2 cut(s)	430, 550
SmiMI	CAYNNNNRTG	1 cut(s)	110
SmlI	CTYRAG	1 cut(s)	335
SmoI	CTYRAG	1 cut(s)	335
Sse9I	AATT	1 cut(s)	667
SsiI	CCGC	3 cut(s)	411, 542, 593
SspMI	CTAG	2 cut(s)	56, 261
StyD4I	CCNGG	2 cut(s)	426, 432
TaaI	ACNGT	1 cut(s)	112
TaiI	ACGT	5 cut(s)	18, 258, 522, 530, 563
TaqI	TCGA	2 cut(s)	198, 629
TasI	AATT	1 cut(s)	667
TauI	GCSGC	1 cut(s)	413
TfiI	GAWTC	2 cut(s)	5, 179
TscAI	CASTG	1 cut(s)	115
TseFI	GTSAC	3 cut(s)	256, 419, 544
TseI	GCWGC	1 cut(s)	164
Tsp45I	GTSAC	3 cut(s)	256, 419, 544
TspDTI	ATGAA	3 cut(s)	192, 413, 635
TspGWI	ACGGA	2 cut(s)	407, 563
TspRI	CASTG	1 cut(s)	115
VpaK11BI	GGWCC	2 cut(s)	430, 550
XagI	CCTNNNNNAGG	1 cut(s)	431
XspI	CTAG	2 cut(s)	56, 261
ZraI	GACGTC	1 cut(s)	520

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.