Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0007311

Physical Location & Seq

Genomic Coordinates Forward (+)

2599299 .. 2603073

Gene Structure 3775 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0036700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGGCTTCCAATATAGGAATTATGGACAGTGCTTACTTTGTTGGGAGGAATGAGATTTTGACTTGGATCAACAATCGTCTTCAGCTCAATCTCTCTCGCATCGAAGAGGCTGCATCTGGTGCTGTGCAATGCCAAATGATGGATATGACGTACCCGGGAGTTGTTCCAATGCACAAGGTCAATTTTGATGCGAAGACAGAATATGATATGATCCAGAACTATAAGATTTTACAGGATGTGTTCAATAAGTTAAAAATTGAGAAGCCTCTTGAAGTCAATAGGCTTGTTAAAGGCAGGCCTTTGGACAACTTGGAGTTCTTACAATGGCTGAAACGATACTGTGATTCTGTCAATGGTGGCATTATGAATGAAAATTATAATCCTGTTGAGCGAAGGTGCAAGGGAGGGAAGGAACGGTATGCCAAGGGTTCTCAAAAAATCCCAAAATCACTGCAAGCAAACAATTCAGGTGACCCAATTGGTCTTAGCAGAACCTCTGGACCAAAGCAAGGGAAGACTTATGCAGGGGCAGGTGGTGCTAATTCTGCAGGAGAGGTCCTAGCTTTGTCTAAGGAGATAACAGATCTCAAGGTCTCGGTGGACCTTTTGGAAAAAGAAAGAGACTTTTACTTTGGAAAACTGAGGGATATTGAAATTCTTTGTCAAACGTCCGGATTGGAGAGTATCCCGATGTCAGTAGCAATAAAGAAGATATTGTATGCTGCTGATGCAAAAGAATCAGCTCTTGCCAAAGCTCAAGAATATCTCCTTTCCGTGAAAGAAGATGAAATTGAAGCAGGAGCTGGAGATGGAGATGGAGCTGAAGCTGAAACAGATCCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005911 GO:0006355 GO:0008150 GO:0009506 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030054 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0055044 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox_KN POX

Protein Analysis

280

Amino Acids

30.91

Weight (kDa)

5.38

Isoelectric Point (pI)

43.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CH	PF00307	16 - 114	4.7e-10	Calponin homology (CH) domain
EB1	PF03271	203 - 241	5.5e-16	EB1-like C-terminal motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007311)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G41410
fragaria_vesca	FvH4_5g02960 FvH4_5g02960 FvH4_5g02960 FvH4_5g02960
malus_domestica	MD06G1088700.v1.1 MD14G1109800.v1.1
prunus_persica	Prupe.5G104600_v2.0.a1 Prupe.5G104600_v2.0.a1
pyrus_communis	pycom06g08460 pycom14g10390
rosa_chinensis	RchiOBHm_Chr7g0196921
rosa_laevigata	RLG00000003980
rosa_multiflora	Rmu_sc0001083.1_g000011
rosa_roxburghii	Rroxscaffold_3G00258870
rosa_rugosa	Rorug07G0036500 Rorug07G0036600 Rorug07G0036700 Rorug07G0036700 Rorug07G0036800
rosa_samantha	Rh7AG161000 Rh7BG163200 Rh7CG169300 Rh7DG162600
rosa_wichuraiana	Rw7G014090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	378
AarI	CACCTGC	1 cut(s)	521
Acc36I	ACCTGC	1 cut(s)	521
AccB7I	CCANNNNNTGG	1 cut(s)	139
AccIII	TCCGGA	1 cut(s)	671
AclWI	GGATC	3 cut(s)	74, 205, 830
AcsI	RAATTY	1 cut(s)	654
AcuI	CTGAAG	2 cut(s)	65, 843
AfaI	GTAC	1 cut(s)	152
AfiI	CCNNNNNNNGG	2 cut(s)	139, 509
AgsI	TTSAA	4 cut(s)	244, 272, 653, 794
AluBI	AGCT	7 cut(s)	85, 563, 743, 755, 803, 821, 827
AluI	AGCT	7 cut(s)	85, 563, 743, 755, 803, 821, 827
Alw26I	GTCTC	2 cut(s)	598, 615
AlwI	GGATC	3 cut(s)	74, 205, 830
AlwNI	CAGNNNCTG	1 cut(s)	803
Ama87I	CYCGRG	1 cut(s)	154
Aor13HI	TCCGGA	1 cut(s)	671
AoxI	GGCC	1 cut(s)	296
ApeKI	GCWGC	2 cut(s)	110, 722
ApoI	RAATTY	1 cut(s)	654
ArsI	GACNNNNNNTTYG	2 cut(s)	614, 646
AspS9I	GGNCC	3 cut(s)	500, 556, 601
AsuC2I	CCSGG	2 cut(s)	155, 156
AsuHPI	GGTGA	1 cut(s)	482
AvaI	CYCGRG	1 cut(s)	154
AvaII	GGWCC	3 cut(s)	500, 556, 601
BbsI	GAAGAC	3 cut(s)	71, 200, 521
BbvI	GCAGC	2 cut(s)	97, 709
BccI	CCATC	3 cut(s)	133, 803, 809
BcgI	CGANNNNNNTGC	2 cut(s)	92, 126
BciVI	GTATCC	1 cut(s)	695
BcnI	CCSGG	2 cut(s)	155, 156
BcoDI	GTCTC	2 cut(s)	598, 615
BfaI	CTAG	1 cut(s)	560
BfmI	CTRYAG	1 cut(s)	546
BfuAI	ACCTGC	1 cut(s)	521
BfuI	GTATCC	1 cut(s)	695
BglII	AGATCT	1 cut(s)	583
BisI	GCNGC	2 cut(s)	111, 723
BlsI	GCNGC	2 cut(s)	112, 724
Bme1390I	CCNGG	2 cut(s)	155, 156
Bme18I	GGWCC	3 cut(s)	500, 556, 601
BmeT110I	CYCGRG	1 cut(s)	154
BmgT120I	GGNCC	3 cut(s)	500, 556, 601
BmrFI	CCNGG	2 cut(s)	155, 156
BmsI	GCATC	4 cut(s)	108, 122, 178, 718
BpiI	GAAGAC	3 cut(s)	71, 200, 521
BpmI	CTGGAG	1 cut(s)	825
BpuEI	CTTGAG	2 cut(s)	572, 741
BpuMI	CCSGG	2 cut(s)	155, 156
BsaI	GGTCTC	1 cut(s)	598
BsaJI	CCNNGG	2 cut(s)	154, 423
BsaWI	WCCGGW	1 cut(s)	671
Bsc4I	CCNNNNNNNGG	2 cut(s)	139, 509
Bse3DI	GCAATG	1 cut(s)	134
BseAI	TCCGGA	1 cut(s)	671
BseDI	CCNNGG	2 cut(s)	154, 423
BseGI	GGATG	1 cut(s)	241
BseLI	CCNNNNNNNGG	2 cut(s)	139, 509
BseMI	GCAATG	1 cut(s)	134
BseMII	CTCAG	1 cut(s)	632
BseXI	GCAGC	2 cut(s)	97, 709
BshFI	GGCC	1 cut(s)	298
BsiHKCI	CYCGRG	1 cut(s)	154
BsiSI	CCGG	2 cut(s)	155, 672
BslI	CCNNNNNNNGG	2 cut(s)	139, 509
BsmAI	GTCTC	2 cut(s)	598, 615
BsnI	GGCC	1 cut(s)	298
Bso31I	GGTCTC	1 cut(s)	598
BsoBI	CYCGRG	1 cut(s)	154
Bsp13I	TCCGGA	1 cut(s)	671
Bsp143I	GATC	4 cut(s)	66, 210, 583, 835
BspANI	GGCC	1 cut(s)	298
BspCNI	CTCAG	1 cut(s)	633
BspEI	TCCGGA	1 cut(s)	671
BspMAI	CTGCAG	1 cut(s)	550
BspMI	ACCTGC	1 cut(s)	521
BspPI	GGATC	3 cut(s)	74, 205, 830
BspTNI	GGTCTC	1 cut(s)	598
BsrDI	GCAATG	1 cut(s)	134
BssECI	CCNNGG	2 cut(s)	154, 423
BssMI	GATC	4 cut(s)	66, 210, 583, 835
BssT1I	CCWWGG	1 cut(s)	423
Bst4CI	ACNGT	3 cut(s)	29, 341, 417
Bst6I	CTCTTC	1 cut(s)	99
BstAPI	GCANNNNNTGC	2 cut(s)	119, 536
BstC8I	GCNNGC	2 cut(s)	296, 456
BstDEI	CTNAG	3 cut(s)	485, 570, 641
BstEII	GGTNACC	1 cut(s)	470
BstF5I	GGATG	1 cut(s)	241
BstKTI	GATC	4 cut(s)	69, 213, 586, 838
BstMAI	GTCTC	2 cut(s)	598, 615
BstMBI	GATC	4 cut(s)	66, 210, 583, 835
BstMWI	GCNNNNNNNGC	4 cut(s)	119, 536, 545, 728
BstPI	GGTNACC	1 cut(s)	470
BstSCI	CCNGG	2 cut(s)	153, 154
BstSFI	CTRYAG	1 cut(s)	546
BstV1I	GCAGC	2 cut(s)	97, 709
BstV2I	GAAGAC	3 cut(s)	71, 200, 521
BstX2I	RGATCY	2 cut(s)	583, 835
BstYI	RGATCY	2 cut(s)	583, 835
BsuI	GTATCC	1 cut(s)	695
BsuRI	GGCC	1 cut(s)	298
BtsCI	GGATG	1 cut(s)	241
BtsI	GCAGTG	1 cut(s)	449
BtsIMutI	CAGTG	2 cut(s)	34, 449
BveI	ACCTGC	1 cut(s)	521
Cac8I	GCNNGC	2 cut(s)	296, 456
CaiI	CAGNNNCTG	1 cut(s)	803
Cfr13I	GGNCC	3 cut(s)	500, 556, 601
Cfr9I	CCCGGG	1 cut(s)	154
Csp6I	GTAC	1 cut(s)	151
CviQI	GTAC	1 cut(s)	151
DdeI	CTNAG	3 cut(s)	485, 570, 641
DpnI	GATC	4 cut(s)	68, 212, 585, 837
DpnII	GATC	4 cut(s)	66, 210, 583, 835
Eam1104I	CTCTTC	1 cut(s)	99
EarI	CTCTTC	1 cut(s)	99
Eco130I	CCWWGG	1 cut(s)	423
Eco147I	AGGCCT	1 cut(s)	298
Eco31I	GGTCTC	1 cut(s)	598
Eco47I	GGWCC	3 cut(s)	500, 556, 601
Eco57I	CTGAAG	2 cut(s)	65, 843
Eco88I	CYCGRG	1 cut(s)	154
Eco91I	GGTNACC	1 cut(s)	470
EcoO109I	RGGNCCY	1 cut(s)	556
EcoO65I	GGTNACC	1 cut(s)	470
EcoT14I	CCWWGG	1 cut(s)	423
ErhI	CCWWGG	1 cut(s)	423
Fnu4HI	GCNGC	2 cut(s)	111, 723
FokI	GGATG	1 cut(s)	248
Fsp4HI	GCNGC	2 cut(s)	111, 723
FspBI	CTAG	1 cut(s)	560
GluI	GCNGC	2 cut(s)	111, 723
GsuI	CTGGAG	1 cut(s)	825
HaeIII	GGCC	1 cut(s)	298
HapII	CCGG	2 cut(s)	155, 672
HinfI	GANTC	2 cut(s)	344, 737
HpaII	CCGG	2 cut(s)	155, 672
HphI	GGTGA	1 cut(s)	482
Hpy166II	GTNNAC	1 cut(s)	601
Hpy188III	TCNNGA	6 cut(s)	214, 269, 498, 672, 688, 758
Hpy8I	GTNNAC	1 cut(s)	601
HpyAV	CCTTC	2 cut(s)	387, 403
HpyCH4III	ACNGT	3 cut(s)	29, 341, 417
HpyCH4IV	ACGT	2 cut(s)	149, 668
HpyCH4V	TGCA	8 cut(s)	113, 127, 172, 399, 454, 524, 548, 731
HpyF10VI	GCNNNNNNNGC	4 cut(s)	119, 536, 545, 728
HpyF3I	CTNAG	3 cut(s)	485, 570, 641
HpySE526I	ACGT	2 cut(s)	149, 668
Kpn2I	TCCGGA	1 cut(s)	671
Kzo9I	GATC	4 cut(s)	66, 210, 583, 835
LmnI	GCTCC	2 cut(s)	800, 818
Lsp1109I	GCAGC	2 cut(s)	97, 709
LweI	GCATC	4 cut(s)	108, 122, 178, 718
MaeI	CTAG	1 cut(s)	560
MaeII	ACGT	2 cut(s)	149, 668
MaeIII	GTNAC	1 cut(s)	470
MalI	GATC	4 cut(s)	68, 212, 585, 837
MboI	GATC	4 cut(s)	66, 210, 583, 835
MboII	GAAGA	6 cut(s)	71, 116, 205, 526, 721, 794
MfeI	CAATTG	1 cut(s)	477
MflI	RGATCY	2 cut(s)	583, 835
MluCI	AATT	9 cut(s)	18, 181, 255, 373, 463, 477, 541, 654, 789
MnlI	CCTC	7 cut(s)	39, 100, 276, 398, 505, 547, 636
MroI	TCCGGA	1 cut(s)	671
MseI	TTAA	2 cut(s)	251, 288
MspI	CCGG	2 cut(s)	155, 672
MspR9I	CCNGG	2 cut(s)	155, 156
MunI	CAATTG	1 cut(s)	477
MwoI	GCNNNNNNNGC	4 cut(s)	119, 536, 545, 728
NciI	CCSGG	2 cut(s)	155, 156
NdeII	GATC	4 cut(s)	66, 210, 583, 835
NmuCI	GTSAC	1 cut(s)	470
PaqCI	CACCTGC	1 cut(s)	521
PceI	AGGCCT	1 cut(s)	298
PfeI	GAWTC	2 cut(s)	344, 737
PflMI	CCANNNNNTGG	1 cut(s)	139
PkrI	GCNGC	2 cut(s)	112, 724
PpuMI	RGGWCCY	1 cut(s)	556
PsiI	TTATAA	1 cut(s)	378
Psp5II	RGGWCCY	1 cut(s)	556
PspEI	GGTNACC	1 cut(s)	470
PspPI	GGNCC	3 cut(s)	500, 556, 601
PspPPI	RGGWCCY	1 cut(s)	556
PstI	CTGCAG	1 cut(s)	550
PstNI	CAGNNNCTG	1 cut(s)	803
PsuI	RGATCY	2 cut(s)	583, 835
RsaI	GTAC	1 cut(s)	152
RsaNI	GTAC	1 cut(s)	151
SaqAI	TTAA	2 cut(s)	251, 288
SatI	GCNGC	2 cut(s)	111, 723
Sau3AI	GATC	4 cut(s)	66, 210, 583, 835
Sau96I	GGNCC	3 cut(s)	500, 556, 601
ScrFI	CCNGG	2 cut(s)	155, 156
SfaNI	GCATC	4 cut(s)	108, 122, 178, 718
SfcI	CTRYAG	1 cut(s)	546
SinI	GGWCC	3 cut(s)	500, 556, 601
SmaI	CCCGGG	1 cut(s)	156
SmlI	CTYRAG	2 cut(s)	587, 756
SmoI	CTYRAG	2 cut(s)	587, 756
Sse9I	AATT	9 cut(s)	18, 181, 255, 373, 463, 477, 541, 654, 789
SseBI	AGGCCT	1 cut(s)	298
SspMI	CTAG	1 cut(s)	560
StuI	AGGCCT	1 cut(s)	298
StyD4I	CCNGG	2 cut(s)	153, 154
StyI	CCWWGG	1 cut(s)	423
TaaI	ACNGT	3 cut(s)	29, 341, 417
TaiI	ACGT	2 cut(s)	152, 671
TaqI	TCGA	1 cut(s)	102
TasI	AATT	9 cut(s)	18, 181, 255, 373, 463, 477, 541, 654, 789
TfiI	GAWTC	2 cut(s)	344, 737
Tru1I	TTAA	2 cut(s)	251, 288
Tru9I	TTAA	2 cut(s)	251, 288
TscAI	CASTG	2 cut(s)	34, 456
TseFI	GTSAC	1 cut(s)	470
TseI	GCWGC	2 cut(s)	110, 722
Tsp45I	GTSAC	1 cut(s)	470
TspDTI	ATGAA	3 cut(s)	380, 384, 801
TspGWI	ACGGA	2 cut(s)	763, 828
TspMI	CCCGGG	1 cut(s)	154
TspRI	CASTG	2 cut(s)	34, 456
Van91I	CCANNNNNTGG	1 cut(s)	139
VpaK11BI	GGWCC	3 cut(s)	500, 556, 601
XapI	RAATTY	1 cut(s)	654
XmaI	CCCGGG	1 cut(s)	154
XspI	CTAG	1 cut(s)	560

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.