Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0011742

Physical Location & Seq

Genomic Coordinates Forward (+)

23325072 .. 23326039

Gene Structure 968 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGGCCTCCTTCTCTGGTTCTTCACCATTTATCTCCCACTCTCTAACAAGACCAAACCACTTCTCTCCTTGTTCATCGCAAACGCCGCCACCTCCGCCCCAAAATCTGCCTTCACAACCGCCTCATTCTCCGACGCCAATTCAGCAGCTCAGCACAAGTTCATCCGAGCAGCCGCCGACATCGGTAAAAGCAGAGCAGCAGAAGCCTTCCAATACCAAAACCAAGGCAGACTCCACAGACTGGATAGCTTCCACCTTGACAAGGAGGTTTGGGATTGGTGCTGGCCTTGCTTGGGCTGCCTTTCTCACAGTTGGTGTTGTCTCTGAGCAAATTAAGACCCGCCTTGAGGTCTCCCAACAAGAATCAAACACAAGAAACGTTGAGAAAGAAGAAGAGGTGGTGTTACCTAATGGAATAAGATACTACGAGCTAAGAGTTGGTGGCGGGGCTACTCCGAGGCCAGGGGACTTGGTGGTGATCGACCTGAAGGGCAAAGTAGAAGGCAGCGGACTGGTGTTTGTGGACACATTTGAGAGAGAGAAGAAGCCGTTGGCTCTGGTGGTAGGGTCAAGGCAGCCTTACAGCAAGGGAGTGTGTGAAGGGATAGAATATGTGATGAGATCCATGAAGGCAGGAGGCAAAAGGAGAGTGGTGGTTCCTCCAAGCTTGGGGTTTGGAGAAAATGGTGCAGATTTAGGCCCTGGTCTGCAAATTCCTCCTTTTGCAACCCTAGACTATATTATTGAGGTTGACAGAGTCTCAATTGCACCTGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005527 GO:0005528 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006457 GO:0006464 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009987 GO:0016020 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0031976 GO:0031984 GO:0034357 GO:0036211 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0061077 GO:0071704 GO:0097159 GO:0140096 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C

Protein Analysis

259

Amino Acids

27.71

Weight (kDa)

8.5

Isoelectric Point (pI)

53.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FKBP_C	PF00254	150 - 250	1.3e-17	FKBP-type peptidyl-prolyl cis-trans isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011742)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18170 AT1G73655
malus_domestica	MD06G1230600.v1.1 MD14G1235200.v1.1
prunus_persica	Prupe.5G231900_v2.0.a1
pyrus_communis	pycom06g20180 pycom14g19620 pycom17g14050
rosa_chinensis	RchiOBHm_Chr7g0178601
rosa_laevigata	RLG00000005433
rosa_multiflora	Rmu_co8510969.1_g000001 Rmu_sc0002320.1_g000004
rosa_roxburghii	Rroxscaffold_3G00274770
rosa_rugosa	Rorug06G0418300
rosa_samantha	Rh7AG017000 Rh7BG016500 Rh7CG017200 Rh7DG017100
rosa_wichuraiana	Rw7G001370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	240
AciI	CCGC	7 cut(s)	86, 95, 119, 173, 340, 444, 507
AclI	AACGTT	1 cut(s)	378
AclWI	GGATC	1 cut(s)	615
AcsI	RAATTY	1 cut(s)	711
AcuI	CTGAAG	1 cut(s)	506
AcyI	GRCGYC	1 cut(s)	134
AfiI	CCNNNNNNNGG	6 cut(s)	240, 261, 292, 346, 461, 668
AjnI	CCWGG	2 cut(s)	460, 700
AjuI	GAANNNNNNNTTGG	2 cut(s)	533, 565
AluBI	AGCT	4 cut(s)	148, 248, 430, 666
AluI	AGCT	4 cut(s)	148, 248, 430, 666
Alw26I	GTCTC	3 cut(s)	325, 355, 763
AlwI	GGATC	1 cut(s)	615
AoxI	GGCC	4 cut(s)	3, 283, 458, 697
ApeKI	GCWGC	6 cut(s)	145, 169, 196, 296, 504, 574
ApoI	RAATTY	1 cut(s)	711
AspS9I	GGNCC	1 cut(s)	698
AsuHPI	GGTGA	2 cut(s)	15, 487
BbvI	GCAGC	6 cut(s)	157, 181, 208, 283, 516, 586
BceAI	ACGGC	1 cut(s)	532
BciT130I	CCWGG	2 cut(s)	462, 702
BcoDI	GTCTC	3 cut(s)	325, 355, 763
BfaI	CTAG	1 cut(s)	731
BisI	GCNGC	8 cut(s)	86, 146, 170, 173, 197, 297, 505, 575
BlpI	GCTNAGC	1 cut(s)	149
BlsI	GCNGC	8 cut(s)	87, 147, 171, 174, 198, 298, 506, 576
Bme1390I	CCNGG	2 cut(s)	462, 702
BmgT120I	GGNCC	1 cut(s)	698
BmiI	GGNNCC	1 cut(s)	657
BmrFI	CCNGG	2 cut(s)	462, 702
Bpu1102I	GCTNAGC	1 cut(s)	149
BpuEI	CTTGAG	1 cut(s)	365
BsaHI	GRCGYC	1 cut(s)	134
BsaI	GGTCTC	1 cut(s)	355
BsaJI	CCNNGG	4 cut(s)	222, 455, 461, 700
Bsc4I	CCNNNNNNNGG	6 cut(s)	240, 261, 292, 346, 461, 668
Bse1I	ACTGG	2 cut(s)	245, 516
BseBI	CCWGG	2 cut(s)	462, 702
BseDI	CCNNGG	4 cut(s)	222, 455, 461, 700
BseGI	GGATG	1 cut(s)	161
BseLI	CCNNNNNNNGG	6 cut(s)	240, 261, 292, 346, 461, 668
BseMII	CTCAG	2 cut(s)	163, 315
BseNI	ACTGG	2 cut(s)	245, 516
BseXI	GCAGC	6 cut(s)	157, 181, 208, 283, 516, 586
BsgI	GTGCAG	1 cut(s)	708
BshFI	GGCC	4 cut(s)	5, 285, 460, 699
BslFI	GGGAC	1 cut(s)	479
BslI	CCNNNNNNNGG	6 cut(s)	240, 261, 292, 346, 461, 668
BsmAI	GTCTC	3 cut(s)	325, 355, 763
BsmFI	GGGAC	1 cut(s)	479
BsnI	GGCC	4 cut(s)	5, 285, 460, 699
Bso31I	GGTCTC	1 cut(s)	355
Bsp143I	GATC	2 cut(s)	477, 620
Bsp1720I	GCTNAGC	1 cut(s)	149
BspACI	CCGC	7 cut(s)	86, 95, 119, 173, 340, 444, 507
BspANI	GGCC	4 cut(s)	5, 285, 460, 699
BspCNI	CTCAG	2 cut(s)	162, 316
BspLI	GGNNCC	1 cut(s)	657
BspPI	GGATC	1 cut(s)	615
BspTNI	GGTCTC	1 cut(s)	355
BsrI	ACTGG	2 cut(s)	245, 516
BssECI	CCNNGG	4 cut(s)	222, 455, 461, 700
BssMI	GATC	2 cut(s)	477, 620
BssNI	GRCGYC	1 cut(s)	134
BssT1I	CCWWGG	1 cut(s)	222
Bst2UI	CCWGG	2 cut(s)	462, 702
Bst4CI	ACNGT	1 cut(s)	310
Bst6I	CTCTTC	1 cut(s)	387
BstACI	GRCGYC	1 cut(s)	134
BstC8I	GCNNGC	1 cut(s)	283
BstDEI	CTNAG	3 cut(s)	149, 324, 431
BstENI	CCTNNNNNAGG	1 cut(s)	259
BstF5I	GGATG	1 cut(s)	161
BstKTI	GATC	2 cut(s)	480, 623
BstMAI	GTCTC	3 cut(s)	325, 355, 763
BstMBI	GATC	2 cut(s)	477, 620
BstMWI	GCNNNNNNNGC	6 cut(s)	85, 94, 142, 202, 287, 296
BstNI	CCWGG	2 cut(s)	462, 702
BstSCI	CCNGG	2 cut(s)	460, 700
BstV1I	GCAGC	6 cut(s)	157, 181, 208, 283, 516, 586
BstX2I	RGATCY	1 cut(s)	620
BstYI	RGATCY	1 cut(s)	620
BsuRI	GGCC	4 cut(s)	5, 285, 460, 699
BtgZI	GCGATG	1 cut(s)	60
BtsCI	GGATG	1 cut(s)	161
Cac8I	GCNNGC	1 cut(s)	283
Cfr13I	GGNCC	1 cut(s)	698
CseI	GACGC	1 cut(s)	142
CviAII	CATG	2 cut(s)	625, 774
DdeI	CTNAG	3 cut(s)	149, 324, 431
DpnI	GATC	2 cut(s)	479, 622
DpnII	GATC	2 cut(s)	477, 620
Eam1104I	CTCTTC	1 cut(s)	387
EarI	CTCTTC	1 cut(s)	387
EciI	GGCGGA	1 cut(s)	84
Eco130I	CCWWGG	1 cut(s)	222
Eco31I	GGTCTC	1 cut(s)	355
Eco57I	CTGAAG	1 cut(s)	506
EcoNI	CCTNNNNNAGG	1 cut(s)	259
EcoO109I	RGGNCCY	1 cut(s)	698
EcoRII	CCWGG	2 cut(s)	460, 700
EcoT14I	CCWWGG	1 cut(s)	222
ErhI	CCWWGG	1 cut(s)	222
FaeI	CATG	2 cut(s)	628, 777
FaiI	YATR	4 cut(s)	612, 626, 738, 775
FalI	AAGNNNNNCTT	2 cut(s)	562, 594
FaqI	GGGAC	1 cut(s)	479
FatI	CATG	2 cut(s)	624, 773
FauI	CCCGC	2 cut(s)	347, 437
Fnu4HI	GCNGC	8 cut(s)	86, 146, 170, 173, 197, 297, 505, 575
FokI	GGATG	1 cut(s)	148
Fsp4HI	GCNGC	8 cut(s)	86, 146, 170, 173, 197, 297, 505, 575
FspBI	CTAG	1 cut(s)	731
GluI	GCNGC	8 cut(s)	86, 146, 170, 173, 197, 297, 505, 575
HaeIII	GGCC	4 cut(s)	5, 285, 460, 699
HgaI	GACGC	1 cut(s)	142
Hin1I	GRCGYC	1 cut(s)	134
Hin1II	CATG	2 cut(s)	628, 777
HincII	GTYRAC	1 cut(s)	751
HindII	GTYRAC	1 cut(s)	751
HindIII	AAGCTT	1 cut(s)	664
HinfI	GANTC	3 cut(s)	230, 362, 756
HphI	GGTGA	2 cut(s)	15, 487
Hpy166II	GTNNAC	2 cut(s)	523, 751
Hpy188I	TCNGA	4 cut(s)	132, 166, 325, 456
Hpy8I	GTNNAC	2 cut(s)	523, 751
Hpy99I	CGWCG	1 cut(s)	136
HpyAV	CCTTC	7 cut(s)	19, 120, 216, 481, 494, 593, 622
HpyCH4III	ACNGT	1 cut(s)	310
HpyCH4IV	ACGT	1 cut(s)	378
HpyCH4V	TGCA	5 cut(s)	689, 709, 725, 767, 773
HpyF10VI	GCNNNNNNNGC	6 cut(s)	85, 94, 142, 202, 287, 296
HpyF3I	CTNAG	3 cut(s)	149, 324, 431
HpySE526I	ACGT	1 cut(s)	378
Hsp92I	GRCGYC	1 cut(s)	134
Hsp92II	CATG	2 cut(s)	628, 777
Kzo9I	GATC	2 cut(s)	477, 620
Lsp1109I	GCAGC	6 cut(s)	157, 181, 208, 283, 516, 586
MaeI	CTAG	1 cut(s)	731
MaeII	ACGT	1 cut(s)	378
MaeIII	GTNAC	1 cut(s)	402
MalI	GATC	2 cut(s)	479, 622
MboI	GATC	2 cut(s)	477, 620
MboII	GAAGA	4 cut(s)	12, 401, 404, 553
MfeI	CAATTG	1 cut(s)	762
MflI	RGATCY	1 cut(s)	620
MluCI	AATT	4 cut(s)	138, 330, 711, 762
MlyI	GAGTC	2 cut(s)	224, 765
MmeI	TCCRAC	1 cut(s)	155
MseI	TTAA	1 cut(s)	333
MslI	CAYNNNNRTG	1 cut(s)	772
MspA1I	CMGCKG	1 cut(s)	507
MspR9I	CCNGG	2 cut(s)	462, 702
MunI	CAATTG	1 cut(s)	762
MvaI	CCWGG	2 cut(s)	462, 702
MwoI	GCNNNNNNNGC	6 cut(s)	85, 94, 142, 202, 287, 296
NdeII	GATC	2 cut(s)	477, 620
NlaIII	CATG	2 cut(s)	628, 777
NlaIV	GGNNCC	1 cut(s)	657
PfeI	GAWTC	1 cut(s)	362
PflFI	GACNNNGTC	1 cut(s)	755
PflMI	CCANNNNNTGG	1 cut(s)	240
PkrI	GCNGC	8 cut(s)	87, 147, 171, 174, 198, 298, 506, 576
PleI	GAGTC	2 cut(s)	224, 764
PpsI	GAGTC	2 cut(s)	224, 764
Psp1406I	AACGTT	1 cut(s)	378
Psp6I	CCWGG	2 cut(s)	460, 700
PspGI	CCWGG	2 cut(s)	460, 700
PspN4I	GGNNCC	1 cut(s)	657
PspPI	GGNCC	1 cut(s)	698
PsuI	RGATCY	1 cut(s)	620
PsyI	GACNNNGTC	1 cut(s)	755
RseI	CAYNNNNRTG	1 cut(s)	772
SaqAI	TTAA	1 cut(s)	333
SatI	GCNGC	8 cut(s)	86, 146, 170, 173, 197, 297, 505, 575
Sau3AI	GATC	2 cut(s)	477, 620
Sau96I	GGNCC	1 cut(s)	698
SchI	GAGTC	2 cut(s)	224, 765
ScrFI	CCNGG	2 cut(s)	462, 702
SmiMI	CAYNNNNRTG	1 cut(s)	772
SmlI	CTYRAG	1 cut(s)	344
SmoI	CTYRAG	1 cut(s)	344
Sse9I	AATT	4 cut(s)	138, 330, 711, 762
SsiI	CCGC	7 cut(s)	86, 95, 119, 173, 340, 444, 507
SspMI	CTAG	1 cut(s)	731
StyD4I	CCNGG	2 cut(s)	460, 700
StyI	CCWWGG	1 cut(s)	222
TaaI	ACNGT	1 cut(s)	310
TaiI	ACGT	1 cut(s)	381
TaqI	TCGA	1 cut(s)	480
TasI	AATT	4 cut(s)	138, 330, 711, 762
TauI	GCSGC	2 cut(s)	88, 175
TfiI	GAWTC	1 cut(s)	362
Tru1I	TTAA	1 cut(s)	333
Tru9I	TTAA	1 cut(s)	333
TseI	GCWGC	6 cut(s)	145, 169, 196, 296, 504, 574
TspDTI	ATGAA	3 cut(s)	63, 150, 641
Tth111I	GACNNNGTC	1 cut(s)	755
Van91I	CCANNNNNTGG	1 cut(s)	240
XagI	CCTNNNNNAGG	1 cut(s)	259
XapI	RAATTY	1 cut(s)	711
XspI	CTAG	1 cut(s)	731

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.