pycom07g08220

Ribosomal protein S19

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0009419
Physical Location & Seq
Reverse (-)
7597239 .. 7598001
763 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 444 bp
ATGGCAAGGCGTCTAATTGCAACCCTCAATCGTGGCCTAGTTGGCAAACTCTTCTCCGAGTCCTCTACCAAGCTGGACTCAGGAAAGCCGGTGGTTGCGGGAATGTGTGGACTGGACAAAGCAGGTTACAGTACCCAAGCCAAGCAAGAATCTCATTTTTATGATGGCGCTTTTGTGGATGCGTTCCTGATGAAAATGAAGAACAACAAAGATCTTCTTAACAATAAGAAAATTTGGTCACGCAGATCTACTATTTTGCCGGAATTCGTGGGTACTACAGTCCGTATCTATAATGGAAAAAATCATGTTCGCTGCAAGATCACCGAAGAGAAGGTTGGTCATAAATTTGGAGAGTTTGCAATGACACGGAAACGAAGAGTTCAGGCTAAAACTACCGCGCCAGTAAGACCAGTGAAACCAGGAAAAAAAGCAGGCAAAAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_S19

Protein Analysis

148

Amino Acids

16.45

Weight (kDa)

10.45

Isoelectric Point (pI)

47.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S19 PF00203 56 - 126 6.9e-25 Ribosomal protein S19
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 113
AccII CGCG 1 cut(s) 398
AciI CCGC 2 cut(s) 98, 396
AcsI RAATTY 3 cut(s) 231, 263, 344
AcyI GRCGYC 1 cut(s) 10
AfaI GTAC 2 cut(s) 133, 274
AjnI CCWGG 1 cut(s) 418
AjuI GAANNNNNNNTTGG 2 cut(s) 318, 350
AluBI AGCT 1 cut(s) 73
AluI AGCT 1 cut(s) 73
AoxI GGCC 1 cut(s) 34
ApeKI GCWGC 1 cut(s) 312
ApoI RAATTY 3 cut(s) 231, 263, 344
AspLEI GCGC 2 cut(s) 170, 400
AsuHPI GGTGA 1 cut(s) 313
BaeI ACNNNNGTAYC 2 cut(s) 264, 297
BbvI GCAGC 1 cut(s) 299
BccI CCATC 1 cut(s) 158
BciT130I CCWGG 1 cut(s) 420
BfaI CTAG 1 cut(s) 38
BfmI CTRYAG 1 cut(s) 276
BfoI RGCGCY 1 cut(s) 171
BfuAI ACCTGC 1 cut(s) 113
BglI GCCNNNNNGGC 1 cut(s) 42
BglII AGATCT 2 cut(s) 211, 245
BisI GCNGC 1 cut(s) 313
BlsI GCNGC 1 cut(s) 314
Bme1390I CCNGG 1 cut(s) 420
BmrFI CCNGG 1 cut(s) 420
BmsI GCATC 1 cut(s) 169
BsaHI GRCGYC 1 cut(s) 10
Bse118I RCCGGY 1 cut(s) 88
Bse1I ACTGG 3 cut(s) 117, 401, 410
Bse3DI GCAATG 1 cut(s) 366
BseBI CCWGG 1 cut(s) 420
BseGI GGATG 1 cut(s) 184
BseMI GCAATG 1 cut(s) 366
BseMII CTCAG 1 cut(s) 93
BseNI ACTGG 3 cut(s) 117, 401, 410
BseXI GCAGC 1 cut(s) 299
Bsh1236I CGCG 1 cut(s) 398
BshFI GGCC 1 cut(s) 36
BsiSI CCGG 2 cut(s) 89, 260
BsnI GGCC 1 cut(s) 36
Bsp143I GATC 3 cut(s) 211, 245, 318
BspACI CCGC 2 cut(s) 98, 396
BspANI GGCC 1 cut(s) 36
BspCNI CTCAG 1 cut(s) 92
BspFNI CGCG 1 cut(s) 398
BspMI ACCTGC 1 cut(s) 113
BsrDI GCAATG 1 cut(s) 366
BsrFI RCCGGY 1 cut(s) 88
BsrI ACTGG 3 cut(s) 117, 401, 410
BssAI RCCGGY 1 cut(s) 88
BssMI GATC 3 cut(s) 211, 245, 318
BssNI GRCGYC 1 cut(s) 10
Bst2UI CCWGG 1 cut(s) 420
Bst4CI ACNGT 2 cut(s) 131, 280
Bst6I CTCTTC 3 cut(s) 56, 321, 370
BstACI GRCGYC 1 cut(s) 10
BstC8I GCNNGC 1 cut(s) 433
BstDEI CTNAG 1 cut(s) 79
BstF5I GGATG 1 cut(s) 184
BstFNI CGCG 1 cut(s) 398
BstH2I RGCGCY 1 cut(s) 171
BstHHI GCGC 2 cut(s) 170, 400
BstKTI GATC 3 cut(s) 214, 248, 321
BstMBI GATC 3 cut(s) 211, 245, 318
BstMWI GCNNNNNNNGC 1 cut(s) 42
BstNI CCWGG 1 cut(s) 420
BstSCI CCNGG 1 cut(s) 418
BstSFI CTRYAG 1 cut(s) 276
BstUI CGCG 1 cut(s) 398
BstV1I GCAGC 1 cut(s) 299
BstX2I RGATCY 2 cut(s) 211, 245
BstYI RGATCY 2 cut(s) 211, 245
BsuRI GGCC 1 cut(s) 36
BtsCI GGATG 1 cut(s) 184
BtsIMutI CAGTG 1 cut(s) 417
BveI ACCTGC 1 cut(s) 113
Cac8I GCNNGC 1 cut(s) 433
CfoI GCGC 2 cut(s) 170, 400
Cfr10I RCCGGY 1 cut(s) 88
Csp6I GTAC 2 cut(s) 132, 273
CviAII CATG 1 cut(s) 305
CviJI RGCY 5 cut(s) 36, 73, 88, 140, 386
CviKI_1 RGCY 5 cut(s) 36, 73, 88, 140, 386
CviQI GTAC 2 cut(s) 132, 273
DdeI CTNAG 1 cut(s) 79
DpnI GATC 3 cut(s) 213, 247, 320
DpnII GATC 3 cut(s) 211, 245, 318
Eam1104I CTCTTC 3 cut(s) 56, 321, 370
EarI CTCTTC 3 cut(s) 56, 321, 370
EcoRI GAATTC 1 cut(s) 263
EcoRII CCWGG 1 cut(s) 418
FaeI CATG 1 cut(s) 308
FaiI YATR 4 cut(s) 162, 291, 306, 342
FalI AAGNNNNNCTT 2 cut(s) 201, 233
FatI CATG 1 cut(s) 304
FauI CCCGC 1 cut(s) 91
Fnu4HI GCNGC 1 cut(s) 313
FokI GGATG 1 cut(s) 191
Fsp4HI GCNGC 1 cut(s) 313
FspBI CTAG 1 cut(s) 38
GlaI GCGC 2 cut(s) 169, 399
GluI GCNGC 1 cut(s) 313
HaeII RGCGCY 1 cut(s) 171
HaeIII GGCC 1 cut(s) 36
HapII CCGG 2 cut(s) 89, 260
HhaI GCGC 2 cut(s) 170, 400
Hin1I GRCGYC 1 cut(s) 10
Hin1II CATG 1 cut(s) 308
Hin6I GCGC 2 cut(s) 168, 398
HinP1I GCGC 2 cut(s) 168, 398
HinfI GANTC 3 cut(s) 59, 77, 149
HpaII CCGG 2 cut(s) 89, 260
HphI GGTGA 1 cut(s) 313
Hpy166II GTNNAC 1 cut(s) 110
Hpy188I TCNGA 1 cut(s) 58
Hpy188III TCNNGA 2 cut(s) 81, 187
Hpy8I GTNNAC 1 cut(s) 110
HpyAV CCTTC 1 cut(s) 325
HpyCH4III ACNGT 2 cut(s) 131, 280
HpyCH4V TGCA 3 cut(s) 20, 315, 359
HpyF10VI GCNNNNNNNGC 1 cut(s) 42
HpyF3I CTNAG 1 cut(s) 79
Hsp92I GRCGYC 1 cut(s) 10
Hsp92II CATG 1 cut(s) 308
HspAI GCGC 2 cut(s) 168, 398
Kzo9I GATC 3 cut(s) 211, 245, 318
Lsp1109I GCAGC 1 cut(s) 299
LweI GCATC 1 cut(s) 169
MaeI CTAG 1 cut(s) 38
MaeIII GTNAC 2 cut(s) 125, 237
MalI GATC 3 cut(s) 213, 247, 320
MboI GATC 3 cut(s) 211, 245, 318
MboII GAAGA 5 cut(s) 43, 206, 211, 338, 387
MflI RGATCY 2 cut(s) 211, 245
MluCI AATT 4 cut(s) 15, 231, 263, 344
MlyI GAGTC 2 cut(s) 68, 71
MnlI CCTC 2 cut(s) 35, 73
MseI TTAA 1 cut(s) 219
MslI CAYNNNNRTG 1 cut(s) 159
MspI CCGG 2 cut(s) 89, 260
MspR9I CCNGG 1 cut(s) 420
MvaI CCWGG 1 cut(s) 420
MvnI CGCG 1 cut(s) 398
MwoI GCNNNNNNNGC 1 cut(s) 42
NdeII GATC 3 cut(s) 211, 245, 318
NlaIII CATG 1 cut(s) 308
NmuCI GTSAC 1 cut(s) 237
PfeI GAWTC 1 cut(s) 149
PkrI GCNGC 1 cut(s) 314
PleI GAGTC 2 cut(s) 67, 71
PpsI GAGTC 2 cut(s) 67, 71
Psp6I CCWGG 1 cut(s) 418
PspGI CCWGG 1 cut(s) 418
PsuI RGATCY 2 cut(s) 211, 245
RsaI GTAC 2 cut(s) 133, 274
RsaNI GTAC 2 cut(s) 132, 273
RseI CAYNNNNRTG 1 cut(s) 159
SaqAI TTAA 1 cut(s) 219
SatI GCNGC 1 cut(s) 313
Sau3AI GATC 3 cut(s) 211, 245, 318
SchI GAGTC 2 cut(s) 68, 71
ScrFI CCNGG 1 cut(s) 420
SetI ASST 3 cut(s) 75, 127, 336
SfaNI GCATC 1 cut(s) 169
SfcI CTRYAG 1 cut(s) 276
SmiMI CAYNNNNRTG 1 cut(s) 159
Sse9I AATT 4 cut(s) 15, 231, 263, 344
SsiI CCGC 2 cut(s) 98, 396
SspMI CTAG 1 cut(s) 38
StyD4I CCNGG 1 cut(s) 418
TaaI ACNGT 2 cut(s) 131, 280
TasI AATT 4 cut(s) 15, 231, 263, 344
TfiI GAWTC 1 cut(s) 149
Tru1I TTAA 1 cut(s) 219
Tru9I TTAA 1 cut(s) 219
TscAI CASTG 1 cut(s) 417
TseFI GTSAC 1 cut(s) 237
TseI GCWGC 1 cut(s) 312
Tsp45I GTSAC 1 cut(s) 237
TspDTI ATGAA 2 cut(s) 206, 212
TspGWI ACGGA 2 cut(s) 272, 382
TspRI CASTG 1 cut(s) 417
XapI RAATTY 3 cut(s) 231, 263, 344
XspI CTAG 1 cut(s) 38
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.