pycom07g12580

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
Physical Location & Seq
Forward (+)
13894000 .. 13894506
507 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g12580.4

Sequence Viewer

Length: 351 bp
ATGCTAGCTAAGGGGGAAGCTAATGTTTTTCATGTTGCTACCTTTTCATGTTTTCTTTGTTTTGCTCGAGGACTAGCAAAAGCTAAGTATGGGGTTCCTTATATTTTTGAGTTATTTAATTTGTGTTTGTGTTTTGTAGGATTTGAACAAATTCGTCAAAACTGTCTGTGCAGGTCAGCTGACTTTGTAAGCAATTTTAGGACAACTCAGAATGAATTAGAGAATGAGCCTTATATGGTTGGAAAGCTACGGATGTCTATTTTCTGGAGCATTTCACGGATTGTTAATATCATTTTTCTACAAGAAGTTATGTCCGTTTTAACACTGAAAGGTTTCCAAGAGGCTGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

117

Amino Acids

13.34

Weight (kDa)

7.57

Isoelectric Point (pI)

40.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 162
AcsI RAATTY 1 cut(s) 150
AgsI TTSAA 1 cut(s) 146
AluBI AGCT 5 cut(s) 8, 20, 83, 179, 247
AluI AGCT 5 cut(s) 8, 20, 83, 179, 247
Ama87I CYCGRG 1 cut(s) 66
ApoI RAATTY 1 cut(s) 150
Asp700I GAANNNNTTC 2 cut(s) 150, 332
AsuNHI GCTAGC 1 cut(s) 4
AvaI CYCGRG 1 cut(s) 66
BfaI CTAG 2 cut(s) 5, 74
BfuAI ACCTGC 1 cut(s) 162
BmeT110I CYCGRG 1 cut(s) 66
BmiI GGNNCC 1 cut(s) 96
BmtI GCTAGC 1 cut(s) 8
BpmI CTGGAG 1 cut(s) 286
Bpu10I CCTNAGC 1 cut(s) 9
BseGI GGATG 1 cut(s) 258
BseMII CTCAG 2 cut(s) 221, 336
BsgI GTGCAG 1 cut(s) 190
BsiHKCI CYCGRG 1 cut(s) 66
BsoBI CYCGRG 1 cut(s) 66
BspCNI CTCAG 2 cut(s) 220, 337
BspLI GGNNCC 1 cut(s) 96
BspMI ACCTGC 1 cut(s) 162
BspOI GCTAGC 1 cut(s) 8
Bst4CI ACNGT 1 cut(s) 164
BstC8I GCNNGC 1 cut(s) 6
BstDEI CTNAG 4 cut(s) 9, 84, 207, 345
BstF5I GGATG 1 cut(s) 258
BtsCI GGATG 1 cut(s) 258
BtsIMutI CAGTG 1 cut(s) 323
BveI ACCTGC 1 cut(s) 162
Cac8I GCNNGC 1 cut(s) 6
CviAII CATG 2 cut(s) 32, 48
CviJI RGCY 7 cut(s) 8, 20, 83, 179, 229, 247, 344
CviKI_1 RGCY 7 cut(s) 8, 20, 83, 179, 229, 247, 344
DdeI CTNAG 4 cut(s) 9, 84, 207, 345
Eco88I CYCGRG 1 cut(s) 66
FaeI CATG 2 cut(s) 35, 51
FaiI YATR 7 cut(s) 33, 49, 90, 102, 234, 236, 311
FatI CATG 2 cut(s) 31, 47
FokI GGATG 1 cut(s) 265
FspBI CTAG 2 cut(s) 5, 74
GsuI CTGGAG 1 cut(s) 286
Hin1II CATG 2 cut(s) 35, 51
Hpy188I TCNGA 1 cut(s) 210
Hpy188III TCNNGA 1 cut(s) 265
HpyCH4III ACNGT 1 cut(s) 164
HpyCH4V TGCA 1 cut(s) 171
HpyF3I CTNAG 4 cut(s) 9, 84, 207, 345
Hsp92II CATG 2 cut(s) 35, 51
LmnI GCTCC 1 cut(s) 267
LpnPI CCDG 2 cut(s) 157, 250
MaeI CTAG 2 cut(s) 5, 74
MluCI AATT 4 cut(s) 118, 150, 193, 215
MmeI TCCRAC 1 cut(s) 220
MnlI CCTC 2 cut(s) 62, 334
MroXI GAANNNNTTC 2 cut(s) 150, 332
MseI TTAA 3 cut(s) 117, 285, 320
MspA1I CMGCKG 1 cut(s) 179
NheI GCTAGC 1 cut(s) 4
NlaIII CATG 2 cut(s) 35, 51
NlaIV GGNNCC 1 cut(s) 96
PaeR7I CTCGAG 1 cut(s) 66
PdmI GAANNNNTTC 2 cut(s) 150, 332
PspN4I GGNNCC 1 cut(s) 96
PspXI VCTCGAGB 1 cut(s) 66
PvuII CAGCTG 1 cut(s) 179
SaqAI TTAA 3 cut(s) 117, 285, 320
SetI ASST 8 cut(s) 10, 22, 44, 85, 176, 181, 249, 334
Sfr274I CTCGAG 1 cut(s) 66
SlaI CTCGAG 1 cut(s) 66
SmlI CTYRAG 1 cut(s) 66
SmoI CTYRAG 1 cut(s) 66
Sse9I AATT 4 cut(s) 118, 150, 193, 215
SspMI CTAG 2 cut(s) 5, 74
TaaI ACNGT 1 cut(s) 164
TaqI TCGA 1 cut(s) 67
TasI AATT 4 cut(s) 118, 150, 193, 215
Tru1I TTAA 3 cut(s) 117, 285, 320
Tru9I TTAA 3 cut(s) 117, 285, 320
TscAI CASTG 1 cut(s) 330
TspDTI ATGAA 3 cut(s) 20, 36, 228
TspGWI ACGGA 3 cut(s) 265, 292, 304
TspRI CASTG 1 cut(s) 330
XapI RAATTY 1 cut(s) 150
XhoI CTCGAG 1 cut(s) 66
XmnI GAANNNNTTC 2 cut(s) 150, 332
XspI CTAG 2 cut(s) 5, 74
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.