transposition, RNA-mediated
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| malus_domestica | MD08G1103800.v1.1 MD12G1074300.v1.1 |
| prunus_persica | Prupe.7G018600_v2.0.a1 |
| pyrus_communis | pycom02g19630 pycom02g23600 pycom03g03000 pycom03g13910 pycom03g14730 pycom04g10220 pycom04g15050 pycom05g05810 pycom05g08660 pycom05g10740 pycom05g25790 pycom05g30480 pycom07g00140 pycom07g12580 pycom08g15900 pycom09g19860 pycom10g00070 pycom10g07070 pycom11g02910 pycom11g15570 pycom11g16730 pycom11g20250 pycom12g09710 pycom13g07670 pycom13g24180 pycom15g26840 pycom15g34440 pycom16g17490 pycom16g23180 pycom17g12380 pycom17g20870 pycom17g21380 |
| rosa_roxburghii | Rroxscaffold_5G00354260 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 25 |
| AciI | CCGC | 1 cut(s) | 25 |
| AcoI | YGGCCR | 1 cut(s) | 60 |
| AcsI | RAATTY | 2 cut(s) | 18, 142 |
| AgsI | TTSAA | 2 cut(s) | 124, 195 |
| AluBI | AGCT | 2 cut(s) | 92, 182 |
| AluI | AGCT | 2 cut(s) | 92, 182 |
| AoxI | GGCC | 1 cut(s) | 60 |
| ApeKI | GCWGC | 1 cut(s) | 149 |
| ApoI | RAATTY | 2 cut(s) | 18, 142 |
| BalI | TGGCCA | 1 cut(s) | 62 |
| BbvI | GCAGC | 1 cut(s) | 161 |
| BfaI | CTAG | 1 cut(s) | 47 |
| BisI | GCNGC | 1 cut(s) | 150 |
| BlpI | GCTNAGC | 1 cut(s) | 93 |
| BlsI | GCNGC | 1 cut(s) | 151 |
| BmiI | GGNNCC | 1 cut(s) | 82 |
| BmsI | GCATC | 1 cut(s) | 151 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 93 |
| BseMII | CTCAG | 1 cut(s) | 84 |
| BseXI | GCAGC | 1 cut(s) | 161 |
| Bsh1236I | CGCG | 1 cut(s) | 25 |
| BshFI | GGCC | 1 cut(s) | 62 |
| BsnI | GGCC | 1 cut(s) | 62 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 93 |
| BspACI | CCGC | 1 cut(s) | 25 |
| BspANI | GGCC | 1 cut(s) | 62 |
| BspCNI | CTCAG | 1 cut(s) | 85 |
| BspFNI | CGCG | 1 cut(s) | 25 |
| BspLI | GGNNCC | 1 cut(s) | 82 |
| BstDEI | CTNAG | 1 cut(s) | 93 |
| BstFNI | CGCG | 1 cut(s) | 25 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 125 |
| BstUI | CGCG | 1 cut(s) | 25 |
| BstV1I | GCAGC | 1 cut(s) | 161 |
| BsuRI | GGCC | 1 cut(s) | 62 |
| BtsIMutI | CAGTG | 1 cut(s) | 71 |
| CviJI | RGCY | 4 cut(s) | 62, 92, 152, 182 |
| CviKI_1 | RGCY | 4 cut(s) | 62, 92, 152, 182 |
| DdeI | CTNAG | 1 cut(s) | 93 |
| EaeI | YGGCCR | 1 cut(s) | 60 |
| FaiI | YATR | 1 cut(s) | 59 |
| Fnu4HI | GCNGC | 1 cut(s) | 150 |
| Fsp4HI | GCNGC | 1 cut(s) | 150 |
| FspBI | CTAG | 1 cut(s) | 47 |
| GluI | GCNGC | 1 cut(s) | 150 |
| HaeIII | GGCC | 1 cut(s) | 62 |
| Hpy188III | TCNNGA | 3 cut(s) | 13, 47, 169 |
| HpyCH4V | TGCA | 1 cut(s) | 164 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 125 |
| HpyF3I | CTNAG | 1 cut(s) | 93 |
| LpnPI | CCDG | 1 cut(s) | 192 |
| Lsp1109I | GCAGC | 1 cut(s) | 161 |
| LweI | GCATC | 1 cut(s) | 151 |
| MaeI | CTAG | 1 cut(s) | 47 |
| MaeIII | GTNAC | 1 cut(s) | 103 |
| MboII | GAAGA | 1 cut(s) | 62 |
| MlsI | TGGCCA | 1 cut(s) | 62 |
| MluCI | AATT | 3 cut(s) | 18, 142, 213 |
| MluNI | TGGCCA | 1 cut(s) | 62 |
| MnlI | CCTC | 2 cut(s) | 197, 217 |
| Mox20I | TGGCCA | 1 cut(s) | 62 |
| MscI | TGGCCA | 1 cut(s) | 62 |
| MseI | TTAA | 4 cut(s) | 33, 68, 216, 229 |
| Msp20I | TGGCCA | 1 cut(s) | 62 |
| MspA1I | CMGCKG | 1 cut(s) | 182 |
| MvnI | CGCG | 1 cut(s) | 25 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 125 |
| NlaIV | GGNNCC | 1 cut(s) | 82 |
| PkrI | GCNGC | 1 cut(s) | 151 |
| PspN4I | GGNNCC | 1 cut(s) | 82 |
| PvuII | CAGCTG | 1 cut(s) | 182 |
| SaqAI | TTAA | 4 cut(s) | 33, 68, 216, 229 |
| SatI | GCNGC | 1 cut(s) | 150 |
| SetI | ASST | 4 cut(s) | 82, 94, 184, 191 |
| SfaNI | GCATC | 1 cut(s) | 151 |
| SgeI | CNNG | 7 cut(s) | 25, 36, 59, 101, 124, 181, 191 |
| Sse9I | AATT | 3 cut(s) | 18, 142, 213 |
| SsiI | CCGC | 1 cut(s) | 25 |
| SspMI | CTAG | 1 cut(s) | 47 |
| TasI | AATT | 3 cut(s) | 18, 142, 213 |
| Tru1I | TTAA | 4 cut(s) | 33, 68, 216, 229 |
| Tru9I | TTAA | 4 cut(s) | 33, 68, 216, 229 |
| TscAI | CASTG | 1 cut(s) | 78 |
| TseI | GCWGC | 1 cut(s) | 149 |
| TspDTI | ATGAA | 1 cut(s) | 225 |
| TspRI | CASTG | 1 cut(s) | 78 |
| XapI | RAATTY | 2 cut(s) | 18, 142 |
| XbaI | TCTAGA | 1 cut(s) | 46 |
| XspI | CTAG | 1 cut(s) | 47 |