pycom09g19860

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0003481
Physical Location & Seq
Forward (+)
20708811 .. 20709068
258 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g19860.1

Sequence Viewer

Length: 258 bp
ATGTTTGGAAATCTACGGATGTCTATTTTCTGGAGCATTTCGCGGATTGTTAATATCATTTTTCTAGAAGAAGTTATGGCCGTTTTAACACTGAAAGGTTCCCAAGAGGCTGAGCAGTTTGTAACTGACAAGAAAGCATTGAAAGCAATAAATCCAATAAATCTAGCAGCCAAAACTGATGCAATCAAGAAAAACCAGCTAACACCTATTCAAATATCAGAGGAAATGGAATTAAAGATGAGGATTAAGAGGGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Asp_protease_2 RVT_1 Retrotrans_gag rve

Protein Analysis

86

Amino Acids

9.77

Weight (kDa)

9.45

Isoelectric Point (pI)

37.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 43
AciI CCGC 1 cut(s) 43
AcoI YGGCCR 1 cut(s) 78
AgsI TTSAA 2 cut(s) 142, 212
AluBI AGCT 1 cut(s) 199
AluI AGCT 1 cut(s) 199
AoxI GGCC 1 cut(s) 78
ApeKI GCWGC 1 cut(s) 167
BbvI GCAGC 1 cut(s) 179
BceAI ACGGC 1 cut(s) 65
BfaI CTAG 2 cut(s) 65, 164
BisI GCNGC 1 cut(s) 168
BlpI GCTNAGC 1 cut(s) 111
BlsI GCNGC 1 cut(s) 169
BmiI GGNNCC 1 cut(s) 100
BmsI GCATC 1 cut(s) 169
BpmI CTGGAG 1 cut(s) 52
Bpu1102I GCTNAGC 1 cut(s) 111
BseGI GGATG 1 cut(s) 24
BseMII CTCAG 1 cut(s) 102
BseXI GCAGC 1 cut(s) 179
Bsh1236I CGCG 1 cut(s) 43
BshFI GGCC 1 cut(s) 80
BsnI GGCC 1 cut(s) 80
Bsp1720I GCTNAGC 1 cut(s) 111
BspACI CCGC 1 cut(s) 43
BspANI GGCC 1 cut(s) 80
BspCNI CTCAG 1 cut(s) 103
BspFNI CGCG 1 cut(s) 43
BspLI GGNNCC 1 cut(s) 100
BstDEI CTNAG 1 cut(s) 111
BstF5I GGATG 1 cut(s) 24
BstFNI CGCG 1 cut(s) 43
BstMWI GCNNNNNNNGC 1 cut(s) 143
BstUI CGCG 1 cut(s) 43
BstV1I GCAGC 1 cut(s) 179
BsuRI GGCC 1 cut(s) 80
BtsCI GGATG 1 cut(s) 24
BtsIMutI CAGTG 1 cut(s) 89
CviJI RGCY 4 cut(s) 80, 110, 170, 199
CviKI_1 RGCY 4 cut(s) 80, 110, 170, 199
DdeI CTNAG 1 cut(s) 111
EaeI YGGCCR 1 cut(s) 78
FaiI YATR 1 cut(s) 77
Fnu4HI GCNGC 1 cut(s) 168
FokI GGATG 1 cut(s) 31
Fsp4HI GCNGC 1 cut(s) 168
FspBI CTAG 2 cut(s) 65, 164
GluI GCNGC 1 cut(s) 168
GsuI CTGGAG 1 cut(s) 52
HaeIII GGCC 1 cut(s) 80
Hpy188I TCNGA 1 cut(s) 220
Hpy188III TCNNGA 3 cut(s) 31, 65, 187
HpyCH4V TGCA 1 cut(s) 182
HpyF10VI GCNNNNNNNGC 1 cut(s) 143
HpyF3I CTNAG 1 cut(s) 111
LmnI GCTCC 1 cut(s) 33
LpnPI CCDG 2 cut(s) 16, 209
Lsp1109I GCAGC 1 cut(s) 179
LweI GCATC 1 cut(s) 169
MaeI CTAG 2 cut(s) 65, 164
MaeIII GTNAC 1 cut(s) 121
MboII GAAGA 1 cut(s) 80
MluCI AATT 1 cut(s) 230
MnlI CCTC 4 cut(s) 100, 214, 234, 243
MseI TTAA 4 cut(s) 51, 86, 233, 246
MvnI CGCG 1 cut(s) 43
MwoI GCNNNNNNNGC 1 cut(s) 143
NlaIV GGNNCC 1 cut(s) 100
PkrI GCNGC 1 cut(s) 169
PspN4I GGNNCC 1 cut(s) 100
SaqAI TTAA 4 cut(s) 51, 86, 233, 246
SatI GCNGC 1 cut(s) 168
SetI ASST 3 cut(s) 100, 201, 208
SfaNI GCATC 1 cut(s) 169
SgeI CNNG 8 cut(s) 43, 54, 77, 116, 142, 176, 199, 208
Sse9I AATT 1 cut(s) 230
SsiI CCGC 1 cut(s) 43
SspMI CTAG 2 cut(s) 65, 164
TasI AATT 1 cut(s) 230
Tru1I TTAA 4 cut(s) 51, 86, 233, 246
Tru9I TTAA 4 cut(s) 51, 86, 233, 246
TscAI CASTG 1 cut(s) 96
TseI GCWGC 1 cut(s) 167
TspGWI ACGGA 1 cut(s) 31
TspRI CASTG 1 cut(s) 96
XbaI TCTAGA 1 cut(s) 64
XspI CTAG 2 cut(s) 65, 164
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.