pycom12g09710

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
OG0003481
Physical Location & Seq
Forward (+)
11516014 .. 11517261
1248 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12g09710.8

Sequence Viewer

Length: 894 bp
ATGCCGCAACATTCAAATCATCCATTCACTCATTCATTCATTCATACTTTCAGAAGGAGAAGAAAACTTGTGCAATCTGCCATCCAAGGGAGTGCCGTGCATGCCATTGGAGTGTGGAGTGTTTCTAGGTGTATTCTATCCTTAGTTTTAGTTCAATATTTATTTAGAGGTGAATTCGAAGCCATGATTATATTTATTAAAAATTGTTTATGTATGTGGATTGGGGGTCGACACTTAATTTGCATGCATGAATTTGATGCTAGAGTATTGATAAGCTCATATTTATATAAATTTTACATCAAATTCACTTGCCTTTTCTTAGATTTGTCAAGCAAAGAAAAGAAAAATAACACAAGTGAAATTTTAAGTAACAAATTCGTCAAAACTGTTTGTAATGAATTAGAGAATGAGCCTTATATGGTTGGAAAGCTACGGATATCTATTTTCTGGAAAATTTCAAGGATTGTTAATATCATTTTTCTACAAGAACAGTTTGTAACTGACAAGAAAGCATTCAAAGCAATAAATCCAATAATTCTAGCAGCCAAAACTGATGCAATCAAGAACAAACCAGCTGACACCTATTCAAATATCAGAGGAAATGAAAATTTAAGTGAGAGTAATGGGCATAAAGGCTGCCCAAAGAGTTACAACTGTTTTATTATGGAGAAAAAACTGTGGCTACAGAAAAGAAGAAAAGGGCTACAGGTTGCAGCAGCAATGGGGGAGAAAAAGTGTGAAAAAAAAAGGAAGGAAGCAAGGAAAAAAGGCAAGGCTGCTGCGTTGGGGAAGGAAGGAAAGGTAGGAGGAAATCTTGGCATTCTCTTCTCTCGGTTTTATCTTCTCAAACTCATGTCTTTCTTTTGGTTTAATTTGAGAATTATGTGTAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

298

Amino Acids

34.36

Weight (kDa)

9.95

Isoelectric Point (pI)

48.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 229
AciI CCGC 1 cut(s) 5
AcsI RAATTY 8 cut(s) 173, 251, 290, 302, 360, 374, 453, 607
AfiI CCNNNNNNNGG 1 cut(s) 87
AgsI TTSAA 5 cut(s) 15, 155, 459, 517, 588
AluBI AGCT 3 cut(s) 276, 430, 575
AluI AGCT 3 cut(s) 276, 430, 575
ApeKI GCWGC 6 cut(s) 542, 636, 713, 716, 776, 779
ApoI RAATTY 8 cut(s) 173, 251, 290, 302, 360, 374, 453, 607
ArsI GACNNNNNNTTYG 2 cut(s) 222, 254
Asp700I GAANNNNTTC 1 cut(s) 512
AsuHPI GGTGA 1 cut(s) 182
AsuII TTCGAA 1 cut(s) 177
BbvI GCAGC 6 cut(s) 554, 623, 725, 728, 763, 766
BccI CCATC 1 cut(s) 89
BceAI ACGGC 1 cut(s) 80
BfaI CTAG 3 cut(s) 126, 261, 539
BfmI CTRYAG 2 cut(s) 683, 704
BisI GCNGC 7 cut(s) 5, 543, 637, 714, 717, 777, 780
BlsI GCNGC 7 cut(s) 6, 544, 638, 715, 718, 778, 781
BmsI GCATC 2 cut(s) 247, 544
Bpu14I TTCGAA 1 cut(s) 177
BsaJI CCNNGG 1 cut(s) 85
BsaXI ACNNNNNCTCC 2 cut(s) 719, 749
Bsc4I CCNNNNNNNGG 1 cut(s) 87
Bse3DI GCAATG 1 cut(s) 726
BseDI CCNNGG 1 cut(s) 85
BseGI GGATG 2 cut(s) 19, 81
BseLI CCNNNNNNNGG 1 cut(s) 87
BseMI GCAATG 1 cut(s) 726
BseXI GCAGC 6 cut(s) 554, 623, 725, 728, 763, 766
BslI CCNNNNNNNGG 1 cut(s) 87
BsmI GAATGC 2 cut(s) 512, 819
Bsp119I TTCGAA 1 cut(s) 177
BspACI CCGC 1 cut(s) 5
BspT104I TTCGAA 1 cut(s) 177
BsrDI GCAATG 1 cut(s) 726
BssECI CCNNGG 1 cut(s) 85
BssT1I CCWWGG 1 cut(s) 85
Bst4CI ACNGT 4 cut(s) 388, 492, 656, 678
Bst6I CTCTTC 1 cut(s) 830
BstBI TTCGAA 1 cut(s) 177
BstC8I GCNNGC 2 cut(s) 102, 245
BstDEI CTNAG 2 cut(s) 142, 319
BstF5I GGATG 2 cut(s) 19, 81
BstMWI GCNNNNNNNGC 2 cut(s) 101, 518
BstNSI RCATGY 2 cut(s) 104, 247
BstSFI CTRYAG 2 cut(s) 683, 704
BstV1I GCAGC 6 cut(s) 554, 623, 725, 728, 763, 766
BtsCI GGATG 2 cut(s) 19, 81
Cac8I GCNNGC 2 cut(s) 102, 245
CviAII CATG 5 cut(s) 101, 184, 244, 248, 853
DdeI CTNAG 2 cut(s) 142, 319
Eam1104I CTCTTC 1 cut(s) 830
EarI CTCTTC 1 cut(s) 830
Eco130I CCWWGG 1 cut(s) 85
Eco32I GATATC 1 cut(s) 438
EcoRI GAATTC 1 cut(s) 173
EcoRV GATATC 1 cut(s) 438
EcoT14I CCWWGG 1 cut(s) 85
EcoT22I ATGCAT 1 cut(s) 249
ErhI CCWWGG 1 cut(s) 85
FaeI CATG 5 cut(s) 104, 187, 247, 251, 856
FatI CATG 5 cut(s) 100, 183, 243, 247, 852
FblI GTMKAC 1 cut(s) 229
Fnu4HI GCNGC 7 cut(s) 5, 543, 637, 714, 717, 777, 780
FokI GGATG 2 cut(s) 6, 68
Fsp4HI GCNGC 7 cut(s) 5, 543, 637, 714, 717, 777, 780
FspBI CTAG 3 cut(s) 126, 261, 539
GluI GCNGC 7 cut(s) 5, 543, 637, 714, 717, 777, 780
Hin1II CATG 5 cut(s) 104, 187, 247, 251, 856
HincII GTYRAC 1 cut(s) 230
HindII GTYRAC 1 cut(s) 230
HphI GGTGA 1 cut(s) 182
Hpy166II GTNNAC 1 cut(s) 230
Hpy188I TCNGA 2 cut(s) 53, 596
Hpy188III TCNNGA 2 cut(s) 448, 562
Hpy8I GTNNAC 1 cut(s) 230
HpyAV CCTTC 4 cut(s) 48, 745, 784, 788
HpyCH4III ACNGT 4 cut(s) 388, 492, 656, 678
HpyCH4V TGCA 6 cut(s) 73, 100, 243, 247, 557, 713
HpyF10VI GCNNNNNNNGC 2 cut(s) 101, 518
HpyF3I CTNAG 2 cut(s) 142, 319
Hsp92II CATG 5 cut(s) 104, 187, 247, 251, 856
LpnPI CCDG 3 cut(s) 433, 585, 692
Lsp1109I GCAGC 6 cut(s) 554, 623, 725, 728, 763, 766
LweI GCATC 2 cut(s) 247, 544
MaeI CTAG 3 cut(s) 126, 261, 539
MaeIII GTNAC 4 cut(s) 368, 496, 647, 887
MboII GAAGA 4 cut(s) 72, 705, 817, 833
MmeI TCCRAC 1 cut(s) 403
MnlI CCTC 3 cut(s) 161, 590, 800
Mph1103I ATGCAT 1 cut(s) 249
MroXI GAANNNNTTC 1 cut(s) 512
MseI TTAA 6 cut(s) 198, 236, 365, 468, 611, 870
MslI CAYNNNNRTG 1 cut(s) 110
MspA1I CMGCKG 1 cut(s) 575
Mva1269I GAATGC 2 cut(s) 512, 819
MwoI GCNNNNNNNGC 2 cut(s) 101, 518
NlaIII CATG 5 cut(s) 104, 187, 247, 251, 856
NsiI ATGCAT 1 cut(s) 249
NspI RCATGY 2 cut(s) 104, 247
NspV TTCGAA 1 cut(s) 177
PaeI GCATGC 2 cut(s) 104, 247
PctI GAATGC 2 cut(s) 512, 819
PdmI GAANNNNTTC 1 cut(s) 512
PkrI GCNGC 7 cut(s) 6, 544, 638, 715, 718, 778, 781
PvuII CAGCTG 1 cut(s) 575
RseI CAYNNNNRTG 1 cut(s) 110
SalI GTCGAC 1 cut(s) 228
SaqAI TTAA 6 cut(s) 198, 236, 365, 468, 611, 870
SatI GCNGC 7 cut(s) 5, 543, 637, 714, 717, 777, 780
SetI ASST 8 cut(s) 131, 172, 278, 432, 577, 584, 711, 804
SfaNI GCATC 2 cut(s) 247, 544
SfcI CTRYAG 2 cut(s) 683, 704
SfuI TTCGAA 1 cut(s) 177
SmiMI CAYNNNNRTG 1 cut(s) 110
SphI GCATGC 2 cut(s) 104, 247
SsiI CCGC 1 cut(s) 5
SspI AATATT 1 cut(s) 158
SspMI CTAG 3 cut(s) 126, 261, 539
StyI CCWWGG 1 cut(s) 85
TaaI ACNGT 4 cut(s) 388, 492, 656, 678
TaqI TCGA 2 cut(s) 177, 229
TauI GCSGC 1 cut(s) 7
Tru1I TTAA 6 cut(s) 198, 236, 365, 468, 611, 870
Tru9I TTAA 6 cut(s) 198, 236, 365, 468, 611, 870
TseI GCWGC 6 cut(s) 542, 636, 713, 716, 776, 779
TspDTI ATGAA 6 cut(s) 24, 28, 32, 264, 411, 618
TspGWI ACGGA 1 cut(s) 448
XapI RAATTY 8 cut(s) 173, 251, 290, 302, 360, 374, 453, 607
XceI RCATGY 2 cut(s) 104, 247
XmiI GTMKAC 1 cut(s) 229
XmnI GAANNNNTTC 1 cut(s) 512
XspI CTAG 3 cut(s) 126, 261, 539
Zsp2I ATGCAT 1 cut(s) 249
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.