pycom11g02910

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0003481
Physical Location & Seq
Forward (+)
2284927 .. 2286037
1111 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g02910.4

Sequence Viewer

Length: 873 bp
ATGAAGTCCGTCAAACTTCTAGAGAGCCTAATCGGCGCTCTTGCTGACGTCGGTGCTATCGCCGTCTCGACCCTCGACATGCTTCTGGCCGTACTCGATGACCTTGGTGACAATGTGGCTGGTCACGTTGGGGAGAGGGATCGCATTAGCGGCGCAGTCGTCCTCCAACTTCTACTTGATGGTCTCCGACTCCATAGCAATCGCCTCATCGACCTCCAACGCCTCACGGCTGGCGAGACTGAGAATGGCCAGAGAGACTCGGTGAGGGATTTGAGGGAAATTACAGAAGTCGGGAGAGAAAAAGAGGAAAAGAAAAGGGAAAAGGATCCTCCCTGGGATCTTAGGGATCCCGTGATCGTGATCGTTCATAGTACATCGTGCGTTCTGACCGCACGATATACGATAAACGGTCACGATCACGAGATCCATAGGATCCCTGATATGCTCATATTTATATATATTTTATATCAAATTCACTTGTCTTTTCTTAGATTTGTCAATCGTCAAAACTGCATGTGCATGTCAGCTAACTTTGGAAGCAAGTTTCGGACAACTAATAATGAATTAGAGAATGATCTTTATATGCTTGGAAAGCTACAGATGTCTATTTTCTGGAGCATTTTGCGGATTTTTAATATCATTTTTCTAGAAGAAGTTATGGCCATTTTAACACTAAAAGGTTCCCAAGAGGCTGAGCAGTTTGTAACTGACAAGAAAGCATTGAAAGCAATAAATCCAATAATTCTAACAGCCAAAACTGATGGAGTAATTGGTATAAAGGCTACCCAAGGAGTTACAACTGTTTTACATTTCCTCTCACTTATTGTCATTACTAAATGGCTATTAGTGGGTGAGTTAAGGAAAATAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Asp_protease_2 RVT_1 Retrotrans_gag rve

Protein Analysis

291

Amino Acids

32.73

Weight (kDa)

6.72

Isoelectric Point (pI)

29.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 51
AciI CCGC 3 cut(s) 150, 390, 625
AclWI GGATC 9 cut(s) 147, 320, 333, 341, 345, 354, 418, 427, 440
AcoI YGGCCR 3 cut(s) 87, 247, 660
AcsI RAATTY 1 cut(s) 471
AcyI GRCGYC 1 cut(s) 48
AfaI GTAC 2 cut(s) 93, 373
AgsI TTSAA 1 cut(s) 724
AjnI CCWGG 1 cut(s) 332
AluBI AGCT 2 cut(s) 527, 595
AluI AGCT 2 cut(s) 527, 595
Alw26I GTCTC 4 cut(s) 70, 188, 230, 249
AlwI GGATC 9 cut(s) 147, 320, 333, 341, 345, 354, 418, 427, 440
AoxI GGCC 3 cut(s) 87, 247, 660
ApoI RAATTY 1 cut(s) 471
AspLEI GCGC 2 cut(s) 38, 155
AsuHPI GGTGA 3 cut(s) 119, 274, 863
BalI TGGCCA 2 cut(s) 249, 662
BamHI GGATCC 3 cut(s) 325, 346, 432
BauI CACGAG 1 cut(s) 419
BccI CCATC 2 cut(s) 173, 755
BceAI ACGGC 3 cut(s) 47, 74, 243
BciT130I CCWGG 1 cut(s) 334
BcoDI GTCTC 4 cut(s) 70, 188, 230, 249
BfaI CTAG 2 cut(s) 20, 647
BfmI CTRYAG 1 cut(s) 596
BfoI RGCGCY 1 cut(s) 39
BglI GCCNNNNNGGC 1 cut(s) 33
BisI GCNGC 1 cut(s) 151
BlpI GCTNAGC 1 cut(s) 693
BlsI GCNGC 1 cut(s) 152
Bme1390I CCNGG 1 cut(s) 334
BmiI GGNNCC 4 cut(s) 327, 348, 434, 682
BmrFI CCNGG 1 cut(s) 334
BpmI CTGGAG 1 cut(s) 634
Bpu1102I GCTNAGC 1 cut(s) 693
BsaBI GATNNNNATC 1 cut(s) 359
BsaHI GRCGYC 1 cut(s) 48
BsaI GGTCTC 1 cut(s) 188
BsaJI CCNNGG 4 cut(s) 103, 332, 333, 787
Bse8I GATNNNNATC 1 cut(s) 359
BseBI CCWGG 1 cut(s) 334
BseDI CCNNGG 4 cut(s) 103, 332, 333, 787
BseJI GATNNNNATC 1 cut(s) 359
BseMII CTCAG 2 cut(s) 231, 684
BshFI GGCC 3 cut(s) 89, 249, 662
BsmAI GTCTC 4 cut(s) 70, 188, 230, 249
BsmBI CGTCTC 1 cut(s) 70
BsnI GGCC 3 cut(s) 89, 249, 662
Bso31I GGTCTC 1 cut(s) 188
Bsp1720I GCTNAGC 1 cut(s) 693
BspACI CCGC 3 cut(s) 150, 390, 625
BspANI GGCC 3 cut(s) 89, 249, 662
BspCNI CTCAG 2 cut(s) 232, 685
BspLI GGNNCC 4 cut(s) 327, 348, 434, 682
BspPI GGATC 9 cut(s) 147, 320, 333, 341, 345, 354, 418, 427, 440
BspTNI GGTCTC 1 cut(s) 188
BssECI CCNNGG 4 cut(s) 103, 332, 333, 787
BssNI GRCGYC 1 cut(s) 48
BssSI CACGAG 1 cut(s) 419
BssT1I CCWWGG 2 cut(s) 103, 787
Bst2BI CACGAG 1 cut(s) 419
Bst2UI CCWGG 1 cut(s) 334
Bst4CI ACNGT 2 cut(s) 410, 802
BstACI GRCGYC 1 cut(s) 48
BstC8I GCNNGC 1 cut(s) 232
BstDEI CTNAG 4 cut(s) 240, 341, 488, 693
BstH2I RGCGCY 1 cut(s) 39
BstHHI GCGC 2 cut(s) 38, 155
BstMAI GTCTC 4 cut(s) 70, 188, 230, 249
BstMWI GCNNNNNNNGC 4 cut(s) 33, 150, 592, 725
BstNI CCWGG 1 cut(s) 334
BstNSI RCATGY 3 cut(s) 82, 517, 523
BstSCI CCNGG 1 cut(s) 332
BstSFI CTRYAG 1 cut(s) 596
BstX2I RGATCY 5 cut(s) 325, 337, 346, 423, 432
BstYI RGATCY 5 cut(s) 325, 337, 346, 423, 432
BsuRI GGCC 3 cut(s) 89, 249, 662
Cac8I GCNNGC 1 cut(s) 232
CfoI GCGC 2 cut(s) 38, 155
Csp6I GTAC 2 cut(s) 92, 372
CviAII CATG 3 cut(s) 79, 514, 520
CviQI GTAC 2 cut(s) 92, 372
DdeI CTNAG 4 cut(s) 240, 341, 488, 693
EaeI YGGCCR 3 cut(s) 87, 247, 660
Eco130I CCWWGG 2 cut(s) 103, 787
Eco31I GGTCTC 1 cut(s) 188
EcoRII CCWGG 1 cut(s) 332
EcoT14I CCWWGG 2 cut(s) 103, 787
ErhI CCWWGG 2 cut(s) 103, 787
Esp3I CGTCTC 1 cut(s) 70
FaeI CATG 3 cut(s) 82, 517, 523
FatI CATG 3 cut(s) 78, 513, 519
Fnu4HI GCNGC 1 cut(s) 151
Fsp4HI GCNGC 1 cut(s) 151
FspBI CTAG 2 cut(s) 20, 647
GlaI GCGC 2 cut(s) 37, 154
GluI GCNGC 1 cut(s) 151
GsuI CTGGAG 1 cut(s) 634
HaeII RGCGCY 1 cut(s) 39
HaeIII GGCC 3 cut(s) 89, 249, 662
HhaI GCGC 2 cut(s) 38, 155
Hin1I GRCGYC 1 cut(s) 48
Hin1II CATG 3 cut(s) 82, 517, 523
Hin6I GCGC 2 cut(s) 36, 153
HinP1I GCGC 2 cut(s) 36, 153
HinfI GANTC 2 cut(s) 189, 257
HphI GGTGA 3 cut(s) 119, 274, 863
Hpy188I TCNGA 3 cut(s) 188, 387, 549
Hpy188III TCNNGA 8 cut(s) 20, 67, 292, 358, 413, 419, 613, 647
Hpy99I CGWCG 1 cut(s) 53
HpyCH4III ACNGT 2 cut(s) 410, 802
HpyCH4IV ACGT 2 cut(s) 48, 126
HpyCH4V TGCA 2 cut(s) 513, 519
HpyF10VI GCNNNNNNNGC 4 cut(s) 33, 150, 592, 725
HpyF3I CTNAG 4 cut(s) 240, 341, 488, 693
HpySE526I ACGT 2 cut(s) 48, 126
Hsp92I GRCGYC 1 cut(s) 48
Hsp92II CATG 3 cut(s) 82, 517, 523
HspAI GCGC 2 cut(s) 36, 153
LmnI GCTCC 1 cut(s) 615
LpnPI CCDG 8 cut(s) 71, 105, 216, 263, 319, 346, 450, 598
MaeI CTAG 2 cut(s) 20, 647
MaeII ACGT 2 cut(s) 48, 126
MaeIII GTNAC 5 cut(s) 107, 122, 410, 703, 793
MboII GAAGA 1 cut(s) 662
MflI RGATCY 5 cut(s) 325, 337, 346, 423, 432
MlsI TGGCCA 2 cut(s) 249, 662
MluCI AATT 5 cut(s) 279, 471, 563, 741, 768
MluNI TGGCCA 2 cut(s) 249, 662
MlyI GAGTC 2 cut(s) 183, 251
MmeI TCCRAC 3 cut(s) 190, 211, 241
Mox20I TGGCCA 2 cut(s) 249, 662
MscI TGGCCA 2 cut(s) 249, 662
MseI TTAA 3 cut(s) 633, 668, 857
MslI CAYNNNNRTG 1 cut(s) 518
Msp20I TGGCCA 2 cut(s) 249, 662
MspR9I CCNGG 1 cut(s) 334
MvaI CCWGG 1 cut(s) 334
MwoI GCNNNNNNNGC 4 cut(s) 33, 150, 592, 725
NlaIII CATG 3 cut(s) 82, 517, 523
NlaIV GGNNCC 4 cut(s) 327, 348, 434, 682
NmuCI GTSAC 3 cut(s) 107, 122, 410
NspI RCATGY 3 cut(s) 82, 517, 523
PasI CCCWGGG 1 cut(s) 333
PkrI GCNGC 1 cut(s) 152
PleI GAGTC 2 cut(s) 183, 251
PpsI GAGTC 2 cut(s) 183, 251
Psp6I CCWGG 1 cut(s) 332
PspGI CCWGG 1 cut(s) 332
PspN4I GGNNCC 4 cut(s) 327, 348, 434, 682
PsuI RGATCY 5 cut(s) 325, 337, 346, 423, 432
RsaI GTAC 2 cut(s) 93, 373
RsaNI GTAC 2 cut(s) 92, 372
RseI CAYNNNNRTG 1 cut(s) 518
SaqAI TTAA 3 cut(s) 633, 668, 857
SatI GCNGC 1 cut(s) 151
SchI GAGTC 2 cut(s) 183, 251
ScrFI CCNGG 1 cut(s) 334
SetI ASST 7 cut(s) 51, 105, 129, 216, 529, 597, 682
SfcI CTRYAG 1 cut(s) 596
SmiMI CAYNNNNRTG 1 cut(s) 518
Sse9I AATT 5 cut(s) 279, 471, 563, 741, 768
SsiI CCGC 3 cut(s) 150, 390, 625
SspMI CTAG 2 cut(s) 20, 647
StyD4I CCNGG 1 cut(s) 332
StyI CCWWGG 2 cut(s) 103, 787
TaaI ACNGT 2 cut(s) 410, 802
TaiI ACGT 2 cut(s) 51, 129
TaqI TCGA 4 cut(s) 68, 75, 96, 210
TasI AATT 5 cut(s) 279, 471, 563, 741, 768
TatI WGTACW 1 cut(s) 371
TauI GCSGC 1 cut(s) 153
Tru1I TTAA 3 cut(s) 633, 668, 857
Tru9I TTAA 3 cut(s) 633, 668, 857
TseFI GTSAC 3 cut(s) 107, 122, 410
Tsp45I GTSAC 3 cut(s) 107, 122, 410
TspDTI ATGAA 3 cut(s) 17, 356, 576
XapI RAATTY 1 cut(s) 471
XbaI TCTAGA 2 cut(s) 19, 646
XceI RCATGY 3 cut(s) 82, 517, 523
XspI CTAG 2 cut(s) 20, 647
ZraI GACGTC 1 cut(s) 49
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.