Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0006978

Physical Location & Seq

Genomic Coordinates Reverse (-)

16657279 .. 16659725

Gene Structure 2447 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGGCGAGAGTCAAACACACCGCCGGAAGAAAAGGCCGAAGCTCGGTGGCCTCACCTGCTCAACCGGAATCTTCTAGAGGCACGAGGAGGTCCGAGGCAAATCCGACAAGTCCAGGAACGCAGCAGAAGAAGCGGCGTTACAGGCCAGGAACAGTGGCTCTTCGGGAGATTCGTCACCTCCAGAAGACAGTTAAGATGATTATCCCAGCTGCTCCATTCATCAGAACTGTAAGAGAAATCACAAACTCTGTGTCTAGAGAGCCTAAGCGTTGGACGCCTGATGCTTTACTAGCAATTCAAGAGGCTGCAGAGGATTATGTCATTCAGTTGTTTGAAGATTCCAACCTCTGTGCAATTCATGCAAAGCGGGTCACTCTTATGAAGAAGGATTTTGAGTTGGCTCGTCGGATTGGAGGGAAAGGGAGGATCTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0000775 GO:0000785 GO:0000786 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006323 GO:0006325 GO:0006333 GO:0006334 GO:0006996 GO:0007049 GO:0007059 GO:0008150 GO:0009566 GO:0009567 GO:0009987 GO:0016043 GO:0019953 GO:0022402 GO:0022414 GO:0022607 GO:0031490 GO:0031491 GO:0031492 GO:0031497 GO:0032991 GO:0032993 GO:0034508 GO:0034622 GO:0034728 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0044703 GO:0044815 GO:0044877 GO:0045132 GO:0048285 GO:0051276 GO:0051301 GO:0051304 GO:0051307 GO:0051321 GO:0051704 GO:0065003 GO:0065004 GO:0071103 GO:0071824 GO:0071840 GO:0097159 GO:0098687 GO:0098813 GO:0140013 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko05034 ko05202 ko05322 map05034 map05202 map05322

Pfam Domains

Protein Families

Histone

Protein Analysis

145

Amino Acids

16.29

Weight (kDa)

11.23

Isoelectric Point (pI)

71.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Histone	PF00125	49 - 137	3.5e-26	Core histone H2A/H2B/H3/H4 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006978)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01370 AT1G01370 AT1G01370 AT1G01370
fragaria_vesca	FvH4_7g16180 FvH4_7g16180
malus_domestica	MD03G1162100.v1.1 MD07G1147400.v1.1
prunus_persica	Prupe.2G185400_v2.0.a1 Prupe.2G185400_v2.0.a1
pyrus_communis	pycom03g11510 pycom07g14650
rosa_chinensis	RchiOBHm_Chr1g0359181
rosa_laevigata	RLG00000002511 RLG00000027895
rosa_multiflora	Rmu_ssc0000135.1_g000016
rosa_roxburghii	Rroxscaffold_4G00297270
rosa_rugosa	Rorug01G0268000 Rorug01G0268100 Rorug01G0268200
rosa_samantha	Rh1AG282100 Rh1BG248500 Rh1CG266300 Rh1DG277500
rosa_wichuraiana	Rw1G025050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	64
Acc36I	ACCTGC	1 cut(s)	64
AciI	CCGC	3 cut(s)	21, 133, 367
AclWI	GGATC	1 cut(s)	434
AcyI	GRCGYC	1 cut(s)	275
AfiI	CCNNNNNNNGG	1 cut(s)	43
AgsI	TTSAA	2 cut(s)	299, 335
AjnI	CCWGG	2 cut(s)	112, 145
AluBI	AGCT	2 cut(s)	42, 209
AluI	AGCT	2 cut(s)	42, 209
AlwI	GGATC	1 cut(s)	434
AoxI	GGCC	3 cut(s)	34, 48, 143
ApeKI	GCWGC	3 cut(s)	121, 209, 305
ArsI	GACNNNNNNTTYG	2 cut(s)	236, 268
AspS9I	GGNCC	1 cut(s)	90
AsuHPI	GGTGA	2 cut(s)	45, 167
AvaII	GGWCC	1 cut(s)	90
BarI	GAAGNNNNNNTAC	2 cut(s)	122, 154
BauI	CACGAG	1 cut(s)	82
BbsI	GAAGAC	1 cut(s)	191
BbvI	GCAGC	3 cut(s)	133, 196, 292
BciT130I	CCWGG	2 cut(s)	114, 147
BfaI	CTAG	3 cut(s)	75, 255, 290
BfmI	CTRYAG	1 cut(s)	306
BfuAI	ACCTGC	1 cut(s)	64
BisI	GCNGC	4 cut(s)	122, 134, 210, 306
BlsI	GCNGC	4 cut(s)	123, 135, 211, 307
Bme1390I	CCNGG	2 cut(s)	114, 147
Bme18I	GGWCC	1 cut(s)	90
BmgT120I	GGNCC	1 cut(s)	90
BmrFI	CCNGG	2 cut(s)	114, 147
BmsI	GCATC	1 cut(s)	271
BpiI	GAAGAC	1 cut(s)	191
BpmI	CTGGAG	1 cut(s)	164
Bpu10I	CCTNAGC	1 cut(s)	264
BsaBI	GATNNNNATC	1 cut(s)	200
BsaHI	GRCGYC	1 cut(s)	275
BsaJI	CCNNGG	1 cut(s)	93
BsaWI	WCCGGW	1 cut(s)	64
Bsc4I	CCNNNNNNNGG	1 cut(s)	43
Bse8I	GATNNNNATC	1 cut(s)	200
BseBI	CCWGG	2 cut(s)	114, 147
BseDI	CCNNGG	1 cut(s)	93
BseJI	GATNNNNATC	1 cut(s)	200
BseLI	CCNNNNNNNGG	1 cut(s)	43
BseRI	GAGGAG	1 cut(s)	100
BseXI	GCAGC	3 cut(s)	133, 196, 292
BseYI	CCCAGC	1 cut(s)	205
BshFI	GGCC	3 cut(s)	36, 50, 145
BsiSI	CCGG	2 cut(s)	24, 65
BslI	CCNNNNNNNGG	1 cut(s)	43
BsnI	GGCC	3 cut(s)	36, 50, 145
Bsp143I	GATC	1 cut(s)	426
BspACI	CCGC	3 cut(s)	21, 133, 367
BspANI	GGCC	3 cut(s)	36, 50, 145
BspMAI	CTGCAG	1 cut(s)	310
BspMI	ACCTGC	1 cut(s)	64
BspPI	GGATC	1 cut(s)	434
BspQI	GCTCTTC	1 cut(s)	165
BssECI	CCNNGG	1 cut(s)	93
BssMI	GATC	1 cut(s)	426
BssNI	GRCGYC	1 cut(s)	275
BssSI	CACGAG	1 cut(s)	82
Bst2BI	CACGAG	1 cut(s)	82
Bst2UI	CCWGG	2 cut(s)	114, 147
Bst4CI	ACNGT	3 cut(s)	154, 190, 229
Bst6I	CTCTTC	1 cut(s)	165
BstACI	GRCGYC	1 cut(s)	275
BstAPI	GCANNNNNTGC	1 cut(s)	359
BstDEI	CTNAG	1 cut(s)	264
BstKTI	GATC	1 cut(s)	429
BstMBI	GATC	1 cut(s)	426
BstMWI	GCNNNNNNNGC	6 cut(s)	56, 130, 142, 274, 290, 359
BstNI	CCWGG	2 cut(s)	114, 147
BstSCI	CCNGG	2 cut(s)	112, 145
BstSFI	CTRYAG	1 cut(s)	306
BstV1I	GCAGC	3 cut(s)	133, 196, 292
BstV2I	GAAGAC	1 cut(s)	191
BstX2I	RGATCY	1 cut(s)	426
BstYI	RGATCY	1 cut(s)	426
BsuRI	GGCC	3 cut(s)	36, 50, 145
BtsIMutI	CAGTG	1 cut(s)	159
BveI	ACCTGC	1 cut(s)	64
Cfr13I	GGNCC	1 cut(s)	90
CseI	GACGC	1 cut(s)	283
CviAII	CATG	1 cut(s)	359
CviJI	RGCY	9 cut(s)	36, 42, 50, 145, 158, 209, 262, 305, 401
CviKI_1	RGCY	9 cut(s)	36, 42, 50, 145, 158, 209, 262, 305, 401
DdeI	CTNAG	1 cut(s)	264
DpnI	GATC	1 cut(s)	428
DpnII	GATC	1 cut(s)	426
Eam1104I	CTCTTC	1 cut(s)	165
EarI	CTCTTC	1 cut(s)	165
Eco47I	GGWCC	1 cut(s)	90
EcoRII	CCWGG	2 cut(s)	112, 145
FaeI	CATG	1 cut(s)	362
FaiI	YATR	3 cut(s)	318, 360, 380
FatI	CATG	1 cut(s)	358
FauI	CCCGC	1 cut(s)	360
Fnu4HI	GCNGC	4 cut(s)	122, 134, 210, 306
Fsp4HI	GCNGC	4 cut(s)	122, 134, 210, 306
FspBI	CTAG	3 cut(s)	75, 255, 290
GluI	GCNGC	4 cut(s)	122, 134, 210, 306
GsaI	CCCAGC	1 cut(s)	209
GsuI	CTGGAG	1 cut(s)	164
HaeIII	GGCC	3 cut(s)	36, 50, 145
HapII	CCGG	2 cut(s)	24, 65
HgaI	GACGC	1 cut(s)	283
Hin1I	GRCGYC	1 cut(s)	275
Hin1II	CATG	1 cut(s)	362
HinfI	GANTC	4 cut(s)	9, 68, 169, 338
HpaII	CCGG	2 cut(s)	24, 65
HphI	GGTGA	2 cut(s)	45, 167
Hpy188I	TCNGA	4 cut(s)	94, 105, 224, 408
Hpy188III	TCNNGA	5 cut(s)	75, 164, 181, 255, 299
Hpy99I	CGWCG	1 cut(s)	408
HpyAV	CCTTC	1 cut(s)	379
HpyCH4III	ACNGT	3 cut(s)	154, 190, 229
HpyCH4V	TGCA	3 cut(s)	308, 353, 362
HpyF10VI	GCNNNNNNNGC	6 cut(s)	56, 130, 142, 274, 290, 359
HpyF3I	CTNAG	1 cut(s)	264
Hsp92I	GRCGYC	1 cut(s)	275
Hsp92II	CATG	1 cut(s)	362
Kzo9I	GATC	1 cut(s)	426
LguI	GCTCTTC	1 cut(s)	165
LmnI	GCTCC	1 cut(s)	217
Lsp1109I	GCAGC	3 cut(s)	133, 196, 292
LweI	GCATC	1 cut(s)	271
MaeI	CTAG	3 cut(s)	75, 255, 290
MaeIII	GTNAC	3 cut(s)	137, 173, 370
MalI	GATC	1 cut(s)	428
MboI	GATC	1 cut(s)	426
MboII	GAAGA	7 cut(s)	39, 63, 139, 152, 196, 347, 394
MflI	RGATCY	1 cut(s)	426
MluCI	AATT	2 cut(s)	294, 354
MlyI	GAGTC	1 cut(s)	18
MmeI	TCCRAC	4 cut(s)	128, 251, 366, 386
MseI	TTAA	1 cut(s)	192
MslI	CAYNNNNRTG	1 cut(s)	377
MspA1I	CMGCKG	1 cut(s)	209
MspI	CCGG	2 cut(s)	24, 65
MspR9I	CCNGG	2 cut(s)	114, 147
MvaI	CCWGG	2 cut(s)	114, 147
MwoI	GCNNNNNNNGC	6 cut(s)	56, 130, 142, 274, 290, 359
NdeII	GATC	1 cut(s)	426
NlaIII	CATG	1 cut(s)	362
NmuCI	GTSAC	2 cut(s)	173, 370
PaqCI	CACCTGC	1 cut(s)	64
PciSI	GCTCTTC	1 cut(s)	165
PcsI	WCGNNNNNNNCGW	1 cut(s)	169
PfeI	GAWTC	3 cut(s)	68, 169, 338
PfoI	TCCNGGA	1 cut(s)	112
PkrI	GCNGC	4 cut(s)	123, 135, 211, 307
PleI	GAGTC	1 cut(s)	17
PpsI	GAGTC	1 cut(s)	17
Psp6I	CCWGG	2 cut(s)	112, 145
PspFI	CCCAGC	1 cut(s)	205
PspGI	CCWGG	2 cut(s)	112, 145
PspPI	GGNCC	1 cut(s)	90
PstI	CTGCAG	1 cut(s)	310
PsuI	RGATCY	1 cut(s)	426
PvuII	CAGCTG	1 cut(s)	209
RseI	CAYNNNNRTG	1 cut(s)	377
SapI	GCTCTTC	1 cut(s)	165
SaqAI	TTAA	1 cut(s)	192
SatI	GCNGC	4 cut(s)	122, 134, 210, 306
Sau3AI	GATC	1 cut(s)	426
Sau96I	GGNCC	1 cut(s)	90
SchI	GAGTC	1 cut(s)	18
ScrFI	CCNGG	2 cut(s)	114, 147
SetI	ASST	6 cut(s)	44, 58, 92, 180, 211, 348
SfaNI	GCATC	1 cut(s)	271
SfcI	CTRYAG	1 cut(s)	306
SinI	GGWCC	1 cut(s)	90
SmiMI	CAYNNNNRTG	1 cut(s)	377
Sse9I	AATT	2 cut(s)	294, 354
SsiI	CCGC	3 cut(s)	21, 133, 367
SspMI	CTAG	3 cut(s)	75, 255, 290
StyD4I	CCNGG	2 cut(s)	112, 145
TaaI	ACNGT	3 cut(s)	154, 190, 229
TasI	AATT	2 cut(s)	294, 354
TauI	GCSGC	1 cut(s)	136
TfiI	GAWTC	3 cut(s)	68, 169, 338
Tru1I	TTAA	1 cut(s)	192
Tru9I	TTAA	1 cut(s)	192
TscAI	CASTG	1 cut(s)	159
TseFI	GTSAC	2 cut(s)	173, 370
TseI	GCWGC	3 cut(s)	121, 209, 305
Tsp45I	GTSAC	2 cut(s)	173, 370
TspDTI	ATGAA	3 cut(s)	208, 347, 395
TspRI	CASTG	1 cut(s)	159
VpaK11BI	GGWCC	1 cut(s)	90
XbaI	TCTAGA	2 cut(s)	74, 254
XspI	CTAG	3 cut(s)	75, 255, 290

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.