pycom07g17130

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0008794
Physical Location & Seq
Reverse (-)
19670796 .. 19675068
4273 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 966 bp
ATGTCAAAGTTCAGAGAGACATTTATATGCGCAGCTGAAGCGCCAGCGACCAATTTGAAGGAAACGTCTTCATTGGAGAGTGTTGAAACTTTGAAAAACAGAAAAACAGAATCCACTGAAACCAAACGTAAGAGTGTAAAGCGTACCTTTAAATCAGAAAAGGAGTTCATAGAGTTCACTTTGAAGTATCAACAAGCTCTTGCCGAAAGAGATTCGGCCATTTCTGTTCGAGATAAGCTTGAGTCCTTGTGCAGGGAGTTGCAACGCCAGAACAAAGTACTAATGGATGAGTGCAAACGGGTGTCAACAGAGGGGCAGAACTTGAGATTAGATTTATCAGTCAAGTTCCAAGATGCAATAAAGGATGTGAGCAATAAACTGGATGAGCAAAAGGAAGAATGTATCTCTCAGCTAAAGGAGAATGAAACGTTAAGAACTAAGCTACAGCAGCTCAACTATCAGCACGCTCTTTCTGAACAGCAATATGAACAGAAGTTAAAGCAGAAATCGCTGGAGCTTCAAATTGCTGATTTGAAGACTAAGCAGCATGAAGAGAAATCACTCCAGGAACAGTCCCAGATGAAATTATATGCAGAACAGGTGTCACAGTTACTAGCAACTGAAAAGAATTTGCGCTTACAGTTGACGGCTGATGGAGAGAAGTTCCAACAATTTCAGGATGCATTGTTGAAAAGCAATGAAGTTTTCGAGACATTTAAACAGGAGATTGAAAAGATGGCAAAGTCCATCAAGGAACTCAAGAAGGAAAACTTATTCTTGAAGAGCAAATGTGAGAAAACAGATGTCACTCTTATAGAACTCGTAGACGAGCGTGAACGGTTGAAGAAACAGTTGGAGAAAACAAAGAACCAGAAAGAAAAGCTTGAATCGCTGTGCCGGTCACTTCAAGCAGAAAGGAAACAGAACTCCACTGGGAGCAACATCTCCGATTCGGTTCCATCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Taxilin

Protein Analysis

322

Amino Acids

37.49

Weight (kDa)

8.66

Isoelectric Point (pI)

54.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Taxilin PF09728 19 - 305 7.7e-74 Myosin-like coiled-coil protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 31
AccI GTMKAC 1 cut(s) 825
AclI AACGTT 1 cut(s) 428
AcoI YGGCCR 1 cut(s) 216
AcsI RAATTY 1 cut(s) 628
AcuI CTGAAG 1 cut(s) 57
AfaI GTAC 2 cut(s) 145, 279
AfiI CCNNNNNNNGG 1 cut(s) 252
AjnI CCWGG 1 cut(s) 564
AjuI GAANNNNNNNTTGG 2 cut(s) 836, 868
AluBI AGCT 8 cut(s) 35, 197, 238, 412, 442, 451, 517, 883
AluI AGCT 8 cut(s) 35, 197, 238, 412, 442, 451, 517, 883
Alw26I GTCTC 2 cut(s) 11, 704
AoxI GGCC 1 cut(s) 216
ApeKI GCWGC 3 cut(s) 32, 448, 544
ApoI RAATTY 1 cut(s) 628
AspLEI GCGC 3 cut(s) 32, 43, 636
BbsI GAAGAC 2 cut(s) 60, 542
BbvI GCAGC 3 cut(s) 44, 460, 556
BccI CCATC 3 cut(s) 647, 730, 755
BceAI ACGGC 1 cut(s) 663
BciT130I CCWGG 1 cut(s) 566
BcoDI GTCTC 2 cut(s) 11, 704
BfaI CTAG 1 cut(s) 614
BfmI CTRYAG 1 cut(s) 443
BfoI RGCGCY 1 cut(s) 44
BisI GCNGC 3 cut(s) 33, 449, 545
BlsI GCNGC 3 cut(s) 34, 450, 546
BmcAI AGTACT 1 cut(s) 279
Bme1390I CCNGG 1 cut(s) 566
BmiI GGNNCC 1 cut(s) 957
BmrFI CCNGG 1 cut(s) 566
BmrI ACTGGG 1 cut(s) 942
BmsI GCATC 2 cut(s) 343, 670
BmuI ACTGGG 1 cut(s) 942
BpiI GAAGAC 2 cut(s) 60, 542
BpmI CTGGAG 2 cut(s) 533, 548
BpuEI CTTGAG 3 cut(s) 260, 343, 743
Bsc4I CCNNNNNNNGG 1 cut(s) 252
Bse118I RCCGGY 1 cut(s) 897
Bse1I ACTGG 2 cut(s) 384, 937
Bse3DI GCAATG 1 cut(s) 703
BseBI CCWGG 1 cut(s) 566
BseGI GGATG 4 cut(s) 292, 370, 388, 685
BseLI CCNNNNNNNGG 1 cut(s) 252
BseMI GCAATG 1 cut(s) 703
BseMII CTCAG 1 cut(s) 422
BseNI ACTGG 2 cut(s) 384, 937
BseXI GCAGC 3 cut(s) 44, 460, 556
BsgI GTGCAG 1 cut(s) 271
BshFI GGCC 1 cut(s) 218
BsiSI CCGG 1 cut(s) 898
BslFI GGGAC 1 cut(s) 559
BslI CCNNNNNNNGG 1 cut(s) 252
BsmAI GTCTC 2 cut(s) 11, 704
BsmFI GGGAC 1 cut(s) 559
BsnI GGCC 1 cut(s) 218
BspANI GGCC 1 cut(s) 218
BspCNI CTCAG 1 cut(s) 421
BspLI GGNNCC 1 cut(s) 957
BspQI GCTCTTC 1 cut(s) 776
BsrDI GCAATG 1 cut(s) 703
BsrFI RCCGGY 1 cut(s) 897
BsrI ACTGG 2 cut(s) 384, 937
BssAI RCCGGY 1 cut(s) 897
Bst2UI CCWGG 1 cut(s) 566
Bst4CI ACNGT 5 cut(s) 573, 609, 642, 840, 852
Bst6I CTCTTC 2 cut(s) 546, 776
BstC8I GCNNGC 2 cut(s) 45, 465
BstDEI CTNAG 3 cut(s) 408, 438, 540
BstENI CCTNNNNNAGG 1 cut(s) 250
BstF5I GGATG 4 cut(s) 292, 370, 388, 685
BstH2I RGCGCY 1 cut(s) 44
BstHHI GCGC 3 cut(s) 32, 43, 636
BstMAI GTCTC 2 cut(s) 11, 704
BstMWI GCNNNNNNNGC 4 cut(s) 38, 448, 508, 889
BstNI CCWGG 1 cut(s) 566
BstSCI CCNGG 1 cut(s) 564
BstSFI CTRYAG 1 cut(s) 443
BstV1I GCAGC 3 cut(s) 44, 460, 556
BstV2I GAAGAC 2 cut(s) 60, 542
BsuRI GGCC 1 cut(s) 218
BtsCI GGATG 4 cut(s) 292, 370, 388, 685
BtsIMutI CAGTG 2 cut(s) 114, 930
Cac8I GCNNGC 2 cut(s) 45, 465
CfoI GCGC 3 cut(s) 32, 43, 636
Cfr10I RCCGGY 1 cut(s) 897
Csp6I GTAC 2 cut(s) 144, 278
CviAII CATG 1 cut(s) 548
CviQI GTAC 2 cut(s) 144, 278
DdeI CTNAG 3 cut(s) 408, 438, 540
DraI TTTAAA 2 cut(s) 151, 718
EaeI YGGCCR 1 cut(s) 216
Eam1104I CTCTTC 2 cut(s) 546, 776
EarI CTCTTC 2 cut(s) 546, 776
Eco57I CTGAAG 1 cut(s) 57
EcoNI CCTNNNNNAGG 1 cut(s) 250
EcoRII CCWGG 1 cut(s) 564
EcoT22I ATGCAT 1 cut(s) 685
FaeI CATG 1 cut(s) 551
FaiI YATR 8 cut(s) 26, 28, 170, 486, 549, 589, 591, 815
FalI AAGNNNNNCTT 6 cut(s) 131, 163, 755, 787, 867, 899
FaqI GGGAC 1 cut(s) 559
FatI CATG 1 cut(s) 547
FblI GTMKAC 1 cut(s) 825
Fnu4HI GCNGC 3 cut(s) 33, 449, 545
FokI GGATG 4 cut(s) 299, 377, 395, 692
Fsp4HI GCNGC 3 cut(s) 33, 449, 545
FspBI CTAG 1 cut(s) 614
FspI TGCGCA 1 cut(s) 31
GlaI GCGC 3 cut(s) 31, 42, 635
GluI GCNGC 3 cut(s) 33, 449, 545
GsuI CTGGAG 2 cut(s) 533, 548
HaeII RGCGCY 1 cut(s) 44
HaeIII GGCC 1 cut(s) 218
HapII CCGG 1 cut(s) 898
HhaI GCGC 3 cut(s) 32, 43, 636
Hin1II CATG 1 cut(s) 551
Hin6I GCGC 3 cut(s) 30, 41, 634
HinP1I GCGC 3 cut(s) 30, 41, 634
HincII GTYRAC 2 cut(s) 306, 645
HindII GTYRAC 2 cut(s) 306, 645
HindIII AAGCTT 2 cut(s) 236, 881
HinfI GANTC 5 cut(s) 110, 212, 242, 887, 950
HpaII CCGG 1 cut(s) 898
Hpy166II GTNNAC 5 cut(s) 177, 306, 645, 826, 836
Hpy188I TCNGA 4 cut(s) 14, 157, 475, 949
Hpy188III TCNNGA 6 cut(s) 230, 677, 709, 760, 778, 963
Hpy8I GTNNAC 5 cut(s) 177, 306, 645, 826, 836
HpyAV CCTTC 2 cut(s) 52, 757
HpyCH4III ACNGT 5 cut(s) 573, 609, 642, 840, 852
HpyCH4IV ACGT 3 cut(s) 65, 127, 428
HpyCH4V TGCA 6 cut(s) 252, 262, 294, 356, 593, 683
HpyF10VI GCNNNNNNNGC 4 cut(s) 38, 448, 508, 889
HpyF3I CTNAG 3 cut(s) 408, 438, 540
HpySE526I ACGT 3 cut(s) 65, 127, 428
Hsp92II CATG 1 cut(s) 551
HspAI GCGC 3 cut(s) 30, 41, 634
LguI GCTCTTC 1 cut(s) 776
LmnI GCTCC 2 cut(s) 514, 936
Lsp1109I GCAGC 3 cut(s) 44, 460, 556
LweI GCATC 2 cut(s) 343, 670
MaeI CTAG 1 cut(s) 614
MaeII ACGT 3 cut(s) 65, 127, 428
MaeIII GTNAC 4 cut(s) 603, 609, 805, 900
MboII GAAGA 6 cut(s) 60, 407, 547, 563, 793, 856
MluCI AATT 5 cut(s) 52, 522, 584, 628, 671
MlyI GAGTC 1 cut(s) 251
MmeI TCCRAC 2 cut(s) 691, 834
MnlI CCTC 1 cut(s) 304
Mph1103I ATGCAT 1 cut(s) 685
MseI TTAA 4 cut(s) 150, 431, 497, 717
MslI CAYNNNNRTG 1 cut(s) 25
MspA1I CMGCKG 1 cut(s) 35
MspI CCGG 1 cut(s) 898
MspR9I CCNGG 1 cut(s) 566
MvaI CCWGG 1 cut(s) 566
MwoI GCNNNNNNNGC 4 cut(s) 38, 448, 508, 889
NlaIII CATG 1 cut(s) 551
NlaIV GGNNCC 1 cut(s) 957
NmuCI GTSAC 3 cut(s) 603, 805, 900
NsbI TGCGCA 1 cut(s) 31
NsiI ATGCAT 1 cut(s) 685
PciSI GCTCTTC 1 cut(s) 776
PfeI GAWTC 4 cut(s) 110, 212, 887, 950
PfoI TCCNGGA 1 cut(s) 564
PkrI GCNGC 3 cut(s) 34, 450, 546
PleI GAGTC 1 cut(s) 250
PpsI GAGTC 1 cut(s) 250
Psp1406I AACGTT 1 cut(s) 428
Psp6I CCWGG 1 cut(s) 564
PspGI CCWGG 1 cut(s) 564
PspN4I GGNNCC 1 cut(s) 957
PvuII CAGCTG 1 cut(s) 35
RsaI GTAC 2 cut(s) 145, 279
RsaNI GTAC 2 cut(s) 144, 278
RseI CAYNNNNRTG 1 cut(s) 25
SapI GCTCTTC 1 cut(s) 776
SaqAI TTAA 4 cut(s) 150, 431, 497, 717
SatI GCNGC 3 cut(s) 33, 449, 545
ScaI AGTACT 1 cut(s) 279
SchI GAGTC 1 cut(s) 251
ScrFI CCNGG 1 cut(s) 566
SfaNI GCATC 2 cut(s) 343, 670
SfcI CTRYAG 1 cut(s) 443
SmiMI CAYNNNNRTG 1 cut(s) 25
SmlI CTYRAG 3 cut(s) 239, 322, 758
SmoI CTYRAG 3 cut(s) 239, 322, 758
Sse9I AATT 5 cut(s) 52, 522, 584, 628, 671
SspMI CTAG 1 cut(s) 614
StyD4I CCNGG 1 cut(s) 564
TaaI ACNGT 5 cut(s) 573, 609, 642, 840, 852
TaiI ACGT 3 cut(s) 68, 130, 431
TaqI TCGA 2 cut(s) 229, 708
TasI AATT 5 cut(s) 52, 522, 584, 628, 671
TatI WGTACW 1 cut(s) 277
TfiI GAWTC 4 cut(s) 110, 212, 887, 950
Tru1I TTAA 4 cut(s) 150, 431, 497, 717
Tru9I TTAA 4 cut(s) 150, 431, 497, 717
TscAI CASTG 2 cut(s) 121, 937
TseFI GTSAC 3 cut(s) 603, 805, 900
TseI GCWGC 3 cut(s) 32, 448, 544
Tsp45I GTSAC 3 cut(s) 603, 805, 900
TspDTI ATGAA 7 cut(s) 60, 157, 438, 501, 564, 596, 714
TspRI CASTG 2 cut(s) 121, 937
XagI CCTNNNNNAGG 1 cut(s) 250
XapI RAATTY 1 cut(s) 628
XmiI GTMKAC 1 cut(s) 825
XspI CTAG 1 cut(s) 614
ZrmI AGTACT 1 cut(s) 279
Zsp2I ATGCAT 1 cut(s) 685
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.