Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0009393

Physical Location & Seq

Genomic Coordinates Forward (+)

20087533 .. 20090138

Gene Structure 2606 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

ATGTCACCCCTGGTGCTCAAAATGACCACAGCAGCCTCCTGTATATACCCCAAAAAGCCCTACCAAATTCTCTTCAATTCCATCTTCTCCTCCACCTCCACCCCCTCCTCCTCCTGTCCCTCTCCACCCCCAATTGGTAAAAACTTCATCGAGGCATTAACGCACACGCGTAAATACTCCGGGTGCAGGATAACCCCCTGTGCACCCCTCCCGCCCCCAATTCTCCCTCTTCCCCCAAACCTAGCCCCCAGATTCCCTAAATGCTTCTCCGCCTCCTCCTCCTCCCGCAGCCGCAGCAACGCTAGTGGCGGTTCCTTCGAAGATCGCGGAGAGTCCTCTGGTAGGTCCGGCTCCGAGTCCGGCCCAGGTGGTGTTGGTGGTCTTATGGCCGACATGGGTTCGGAGAATCATAAGGGCACCGATTGGTACGACAGCCAATTGTACCCGAACCAAGACGAATTGCTTTCTCCTCTGACACATCAACAAAAACAACAGCAGCAGCAATCCCAATCCTCCTCCAAATTCCTCACCTTGCCCACCATTCTAACTCTCGGCCGCGTCGCCGCCGTGCCGGTTCTCATTAGCACTTTCTATGTCGATAGTTGGTGGGGAACAACTACCACAACAAGTATTTTCATTGCTGCAGCAATTACTGATTGGCTCGATGGGTATATTGCTCGGAAGATGAAATTAGGATCTGCTTTTGGTGCATTTTTGGATCCGGTGGCTGATAAGCTCATGGTTGCAGCCACACTGGTTTTATTGTGTTCTAGGCCTTTGGACGTTGCCATGTTTGGGCAAGTTCCATGGCTGTTTGTCGTTCCTTCAATTGCCATAATTGGTAGAGAGATAACCATGTCAGCAGTCAGAGAATGGGCTGCTTCTCAGAACACTAAACTTTTAGAGGCTGTAGCTGTAAGTAACTTGGGAAAGTGGAAAACAGCCACACAGATGATAGCGCTGACTATCCTCTTGGCAACCCGAGACAACAGTCTTGGAAGACCAGATGTCATCGTAGCTTCTGGTGTTTTTCTGCTTTATGTTTCAGCGGGGCTTGCTGTGTGGTCTTTGATCGTGTATATGAGCAAGATATGGAAAGTACTGCTGAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008444 GO:0008610 GO:0008654 GO:0009058 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0016740 GO:0016772 GO:0016780 GO:0017169 GO:0019637 GO:0030145 GO:0031967 GO:0031975 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046474 GO:0046486 GO:0046872 GO:0046914 GO:0071704 GO:0090407 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00564 ko01100 map00564 map01100

Pfam Domains

Protein Families

CDP-OH_P_transf

Protein Analysis

371

Amino Acids

39.92

Weight (kDa)

9.36

Isoelectric Point (pI)

55.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CDP-OH_P_transf	PF01066	177 - 354	1e-29	CDP-alcohol phosphatidyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009393)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39290 AT3G55030
fragaria_vesca	FvH4_7g20600 FvH4_7g20600
malus_domestica	MD01G1114900.v1.1 MD07G1182900.v1.1
prunus_persica	Prupe.2G221600_v2.0.a1
pyrus_communis	pycom01g14380 pycom07g17550
rosa_chinensis	RchiOBHm_Chr1g0364641
rosa_laevigata	RLG00000027470
rosa_multiflora	Rmu_ssc0000112.1_g000038 Rmu_ssc0000282.1_g000017
rosa_roxburghii	Rroxscaffold_4G00291780 Rroxscaffold_4G00292200
rosa_rugosa	Rorug01G0317300 Rorug01G0317300
rosa_samantha	Rh1AG326300 Rh1BG287500 Rh1CG304300 Rh1DG319200
rosa_wichuraiana	Rw1G028910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	416
AccII	CGCG	3 cut(s)	169, 327, 558
AciI	CCGC	9 cut(s)	212, 270, 286, 292, 309, 327, 556, 564, 1049
AclWI	GGATC	3 cut(s)	703, 713, 726
AcoI	YGGCCR	2 cut(s)	387, 553
AcsI	RAATTY	2 cut(s)	66, 521
AfaI	GTAC	3 cut(s)	428, 443, 1101
AfeI	AGCGCT	1 cut(s)	960
AfiI	CCNNNNNNNGG	4 cut(s)	134, 186, 342, 795
AflIII	ACRYGT	1 cut(s)	167
AgsI	TTSAA	2 cut(s)	76, 828
AhdI	GACNNNNNGTC	1 cut(s)	1007
AjnI	CCWGG	2 cut(s)	9, 364
AluBI	AGCT	3 cut(s)	736, 914, 1019
AluI	AGCT	3 cut(s)	736, 914, 1019
Alw21I	GWGCWC	2 cut(s)	18, 205
Alw26I	GTCTC	1 cut(s)	978
Alw44I	GTGCAC	1 cut(s)	201
AlwI	GGATC	3 cut(s)	703, 713, 726
Ama87I	CYCGRG	1 cut(s)	981
Aor51HI	AGCGCT	1 cut(s)	960
AoxI	GGCC	4 cut(s)	361, 387, 553, 773
ApaLI	GTGCAC	1 cut(s)	201
ApeKI	GCWGC	9 cut(s)	32, 288, 294, 496, 499, 641, 644, 746, 878
ApoI	RAATTY	2 cut(s)	66, 521
AspLEI	GCGC	1 cut(s)	961
AspS9I	GGNCC	2 cut(s)	345, 362
AsuC2I	CCSGG	1 cut(s)	181
AsuHPI	GGTGA	1 cut(s)	520
AsuII	TTCGAA	1 cut(s)	318
AvaI	CYCGRG	1 cut(s)	981
AvaII	GGWCC	1 cut(s)	345
BaeGI	GKGCMC	2 cut(s)	205, 419
BamHI	GGATCC	1 cut(s)	718
BanI	GGYRCC	1 cut(s)	416
BbsI	GAAGAC	1 cut(s)	1006
Bbv12I	GWGCWC	2 cut(s)	18, 205
BbvCI	CCTCAGC	1 cut(s)	1106
BbvI	GCAGC	9 cut(s)	44, 300, 306, 508, 511, 628, 656, 758, 865
BccI	CCATC	2 cut(s)	89, 659
BceAI	ACGGC	1 cut(s)	551
BciT130I	CCWGG	2 cut(s)	11, 366
BcnI	CCSGG	1 cut(s)	181
BcoDI	GTCTC	1 cut(s)	978
BfaI	CTAG	3 cut(s)	242, 303, 771
BfmI	CTRYAG	2 cut(s)	642, 909
BfoI	RGCGCY	1 cut(s)	962
BmcAI	AGTACT	1 cut(s)	1101
Bme1390I	CCNGG	3 cut(s)	11, 181, 366
Bme18I	GGWCC	1 cut(s)	345
BmeRI	GACNNNNNGTC	1 cut(s)	1007
BmeT110I	CYCGRG	1 cut(s)	981
BmgT120I	GGNCC	2 cut(s)	345, 362
BmiI	GGNNCC	4 cut(s)	313, 352, 418, 720
BmrFI	CCNGG	3 cut(s)	11, 181, 366
BoxI	GACNNNNGTC	1 cut(s)	990
BpiI	GAAGAC	1 cut(s)	1006
Bpu10I	CCTNAGC	1 cut(s)	1106
Bpu14I	TTCGAA	1 cut(s)	318
BpuMI	CCSGG	1 cut(s)	181
BsaJI	CCNNGG	3 cut(s)	9, 364, 806
BsaWI	WCCGGW	1 cut(s)	721
Bsc4I	CCNNNNNNNGG	4 cut(s)	134, 186, 342, 795
Bse118I	RCCGGY	1 cut(s)	571
Bse1I	ACTGG	1 cut(s)	759
Bse3DI	GCAATG	1 cut(s)	636
BseBI	CCWGG	2 cut(s)	11, 366
BseDI	CCNNGG	3 cut(s)	9, 364, 806
BseLI	CCNNNNNNNGG	4 cut(s)	134, 186, 342, 795
BseMI	GCAATG	1 cut(s)	636
BseMII	CTCAG	2 cut(s)	899, 1097
BseNI	ACTGG	1 cut(s)	759
BseRI	GAGGAG	8 cut(s)	79, 97, 100, 265, 268, 271, 459, 505
BseSI	GKGCMC	2 cut(s)	205, 419
BseX3I	CGGCCG	1 cut(s)	553
BseXI	GCAGC	9 cut(s)	44, 300, 306, 508, 511, 628, 656, 758, 865
BsgI	GTGCAG	1 cut(s)	205
Bsh1236I	CGCG	3 cut(s)	169, 327, 558
Bsh1285I	CGRYCG	1 cut(s)	556
BshFI	GGCC	4 cut(s)	363, 389, 555, 775
BshNI	GGYRCC	1 cut(s)	416
BsiEI	CGRYCG	1 cut(s)	556
BsiHKAI	GWGCWC	2 cut(s)	18, 205
BsiHKCI	CYCGRG	1 cut(s)	981
BsiSI	CCGG	5 cut(s)	180, 348, 360, 572, 722
BslFI	GGGAC	1 cut(s)	102
BslI	CCNNNNNNNGG	4 cut(s)	134, 186, 342, 795
BsmAI	GTCTC	1 cut(s)	978
BsmFI	GGGAC	1 cut(s)	102
BsnI	GGCC	4 cut(s)	363, 389, 555, 775
BsoBI	CYCGRG	1 cut(s)	981
Bsp119I	TTCGAA	1 cut(s)	318
Bsp1286I	GDGCHC	3 cut(s)	18, 205, 419
Bsp143I	GATC	4 cut(s)	322, 695, 718, 1071
Bsp19I	CCATGG	1 cut(s)	806
BspACI	CCGC	9 cut(s)	212, 270, 286, 292, 309, 327, 556, 564, 1049
BspANI	GGCC	4 cut(s)	363, 389, 555, 775
BspCNI	CTCAG	2 cut(s)	898, 1098
BspFNI	CGCG	3 cut(s)	169, 327, 558
BspLI	GGNNCC	4 cut(s)	313, 352, 418, 720
BspMAI	CTGCAG	1 cut(s)	646
BspPI	GGATC	3 cut(s)	703, 713, 726
BspT104I	TTCGAA	1 cut(s)	318
BspT107I	GGYRCC	1 cut(s)	416
BsrDI	GCAATG	1 cut(s)	636
BsrFI	RCCGGY	1 cut(s)	571
BsrI	ACTGG	1 cut(s)	759
BssAI	RCCGGY	1 cut(s)	571
BssECI	CCNNGG	3 cut(s)	9, 364, 806
BssMI	GATC	4 cut(s)	322, 695, 718, 1071
BssT1I	CCWWGG	1 cut(s)	806
Bst2UI	CCWGG	2 cut(s)	11, 366
Bst4CI	ACNGT	1 cut(s)	992
Bst6I	CTCTTC	2 cut(s)	77, 234
BstBI	TTCGAA	1 cut(s)	318
BstC8I	GCNNGC	1 cut(s)	1056
BstDEI	CTNAG	2 cut(s)	885, 1106
BstDSI	CCRYGG	1 cut(s)	806
BstENI	CCTNNNNNAGG	1 cut(s)	340
BstFNI	CGCG	3 cut(s)	169, 327, 558
BstH2I	RGCGCY	1 cut(s)	962
BstHHI	GCGC	1 cut(s)	961
BstKTI	GATC	4 cut(s)	325, 698, 721, 1074
BstMAI	GTCTC	1 cut(s)	978
BstMBI	GATC	4 cut(s)	322, 695, 718, 1071
BstMCI	CGRYCG	1 cut(s)	556
BstMWI	GCNNNNNNNGC	3 cut(s)	294, 707, 1055
BstNI	CCWGG	2 cut(s)	11, 366
BstPAI	GACNNNNGTC	1 cut(s)	990
BstSCI	CCNGG	3 cut(s)	9, 179, 364
BstSFI	CTRYAG	2 cut(s)	642, 909
BstSLI	GKGCMC	2 cut(s)	205, 419
BstUI	CGCG	3 cut(s)	169, 327, 558
BstV1I	GCAGC	9 cut(s)	44, 300, 306, 508, 511, 628, 656, 758, 865
BstV2I	GAAGAC	1 cut(s)	1006
BstX2I	RGATCY	2 cut(s)	695, 718
BstYI	RGATCY	2 cut(s)	695, 718
BstZI	CGGCCG	1 cut(s)	553
BsuRI	GGCC	4 cut(s)	363, 389, 555, 775
BtgI	CCRYGG	1 cut(s)	806
BtsIMutI	CAGTG	1 cut(s)	752
Cac8I	GCNNGC	1 cut(s)	1056
CfoI	GCGC	1 cut(s)	961
Cfr10I	RCCGGY	1 cut(s)	571
Cfr13I	GGNCC	2 cut(s)	345, 362
CseI	GACGC	1 cut(s)	547
Csp6I	GTAC	3 cut(s)	427, 442, 1100
CspCI	CAANNNNNGTGG	2 cut(s)	286, 321
CviAII	CATG	5 cut(s)	394, 739, 790, 807, 856
CviQI	GTAC	3 cut(s)	427, 442, 1100
DdeI	CTNAG	2 cut(s)	885, 1106
DpnI	GATC	4 cut(s)	324, 697, 720, 1073
DpnII	GATC	4 cut(s)	322, 695, 718, 1071
DriI	GACNNNNNGTC	1 cut(s)	1007
EaeI	YGGCCR	2 cut(s)	387, 553
EagI	CGGCCG	1 cut(s)	553
Eam1104I	CTCTTC	2 cut(s)	77, 234
Eam1105I	GACNNNNNGTC	1 cut(s)	1007
EarI	CTCTTC	2 cut(s)	77, 234
EciI	GGCGGA	1 cut(s)	259
EclXI	CGGCCG	1 cut(s)	553
Eco130I	CCWWGG	1 cut(s)	806
Eco147I	AGGCCT	1 cut(s)	775
Eco47I	GGWCC	1 cut(s)	345
Eco47III	AGCGCT	1 cut(s)	960
Eco52I	CGGCCG	1 cut(s)	553
Eco88I	CYCGRG	1 cut(s)	981
EcoNI	CCTNNNNNAGG	1 cut(s)	340
EcoRII	CCWGG	2 cut(s)	9, 364
EcoT14I	CCWWGG	1 cut(s)	806
ErhI	CCWWGG	1 cut(s)	806
FaeI	CATG	5 cut(s)	397, 742, 793, 810, 859
FaqI	GGGAC	1 cut(s)	102
FatI	CATG	5 cut(s)	393, 738, 789, 806, 855
FauI	CCCGC	3 cut(s)	219, 293, 1042
FspBI	CTAG	3 cut(s)	242, 303, 771
GlaI	GCGC	1 cut(s)	960
HaeII	RGCGCY	1 cut(s)	962
HaeIII	GGCC	4 cut(s)	363, 389, 555, 775
HapII	CCGG	5 cut(s)	180, 348, 360, 572, 722
HgaI	GACGC	1 cut(s)	547
HhaI	GCGC	1 cut(s)	961
Hin1II	CATG	5 cut(s)	397, 742, 793, 810, 859
Hin6I	GCGC	1 cut(s)	959
HinP1I	GCGC	1 cut(s)	959
HinfI	GANTC	4 cut(s)	252, 332, 356, 406
HpaII	CCGG	5 cut(s)	180, 348, 360, 572, 722
HphI	GGTGA	1 cut(s)	520
Hpy166II	GTNNAC	1 cut(s)	203
Hpy188I	TCNGA	6 cut(s)	355, 403, 474, 681, 869, 888
Hpy8I	GTNNAC	1 cut(s)	203
Hpy99I	CGWCG	1 cut(s)	563
HpyAV	CCTTC	2 cut(s)	325, 834
HpyCH4III	ACNGT	1 cut(s)	992
HpyCH4IV	ACGT	1 cut(s)	783
HpyCH4V	TGCA	5 cut(s)	186, 203, 644, 710, 746
HpyF10VI	GCNNNNNNNGC	3 cut(s)	294, 707, 1055
HpyF3I	CTNAG	2 cut(s)	885, 1106
HpySE526I	ACGT	1 cut(s)	783
Hsp92II	CATG	5 cut(s)	397, 742, 793, 810, 859
HspAI	GCGC	1 cut(s)	959
Kzo9I	GATC	4 cut(s)	322, 695, 718, 1071
LmnI	GCTCC	1 cut(s)	356
Lsp1109I	GCAGC	9 cut(s)	44, 300, 306, 508, 511, 628, 656, 758, 865
MaeI	CTAG	3 cut(s)	242, 303, 771
MaeII	ACGT	1 cut(s)	783
MaeIII	GTNAC	2 cut(s)	3, 920
MalI	GATC	4 cut(s)	324, 697, 720, 1073
MboI	GATC	4 cut(s)	322, 695, 718, 1071
MboII	GAAGA	6 cut(s)	64, 76, 221, 332, 694, 1011
MfeI	CAATTG	3 cut(s)	132, 437, 828
MflI	RGATCY	2 cut(s)	695, 718
MhlI	GDGCHC	3 cut(s)	18, 205, 419
MluI	ACGCGT	1 cut(s)	167
MlyI	GAGTC	2 cut(s)	341, 365
MseI	TTAA	1 cut(s)	158
MslI	CAYNNNNRTG	1 cut(s)	950
MspA1I	CMGCKG	1 cut(s)	1049
MspI	CCGG	5 cut(s)	180, 348, 360, 572, 722
MspR9I	CCNGG	3 cut(s)	11, 181, 366
MunI	CAATTG	3 cut(s)	132, 437, 828
MvaI	CCWGG	2 cut(s)	11, 366
MvnI	CGCG	3 cut(s)	169, 327, 558
MwoI	GCNNNNNNNGC	3 cut(s)	294, 707, 1055
NciI	CCSGG	1 cut(s)	181
NcoI	CCATGG	1 cut(s)	806
NdeII	GATC	4 cut(s)	322, 695, 718, 1071
NlaIII	CATG	5 cut(s)	397, 742, 793, 810, 859
NlaIV	GGNNCC	4 cut(s)	313, 352, 418, 720
NmeAIII	GCCGAG	1 cut(s)	531
NmuCI	GTSAC	1 cut(s)	3
NspV	TTCGAA	1 cut(s)	318
PceI	AGGCCT	1 cut(s)	775
PfeI	GAWTC	2 cut(s)	252, 406
PleI	GAGTC	2 cut(s)	340, 364
PpsI	GAGTC	2 cut(s)	340, 364
PshAI	GACNNNNGTC	1 cut(s)	990
Psp6I	CCWGG	2 cut(s)	9, 364
PspGI	CCWGG	2 cut(s)	9, 364
PspN4I	GGNNCC	4 cut(s)	313, 352, 418, 720
PspPI	GGNCC	2 cut(s)	345, 362
PstI	CTGCAG	1 cut(s)	646
PsuI	RGATCY	2 cut(s)	695, 718
RsaI	GTAC	3 cut(s)	428, 443, 1101
RsaNI	GTAC	3 cut(s)	427, 442, 1100
RseI	CAYNNNNRTG	1 cut(s)	950
SaqAI	TTAA	1 cut(s)	158
Sau3AI	GATC	4 cut(s)	322, 695, 718, 1071
Sau96I	GGNCC	2 cut(s)	345, 362
ScaI	AGTACT	1 cut(s)	1101
SchI	GAGTC	2 cut(s)	341, 365
ScrFI	CCNGG	3 cut(s)	11, 181, 366
SduI	GDGCHC	3 cut(s)	18, 205, 419
SfcI	CTRYAG	2 cut(s)	642, 909
SfuI	TTCGAA	1 cut(s)	318
SinI	GGWCC	1 cut(s)	345
SmiMI	CAYNNNNRTG	1 cut(s)	950
SseBI	AGGCCT	1 cut(s)	775
SsiI	CCGC	9 cut(s)	212, 270, 286, 292, 309, 327, 556, 564, 1049
SspMI	CTAG	3 cut(s)	242, 303, 771
StuI	AGGCCT	1 cut(s)	775
StyD4I	CCNGG	3 cut(s)	9, 179, 364
StyI	CCWWGG	1 cut(s)	806
TaaI	ACNGT	1 cut(s)	992
TaiI	ACGT	1 cut(s)	786
TaqI	TCGA	4 cut(s)	150, 318, 597, 663
TatI	WGTACW	1 cut(s)	1099
TauI	GCSGC	3 cut(s)	294, 558, 566
TfiI	GAWTC	2 cut(s)	252, 406
Tru1I	TTAA	1 cut(s)	158
Tru9I	TTAA	1 cut(s)	158
TscAI	CASTG	1 cut(s)	759
TseFI	GTSAC	1 cut(s)	3
TseI	GCWGC	9 cut(s)	32, 288, 294, 496, 499, 641, 644, 746, 878
Tsp45I	GTSAC	1 cut(s)	3
TspDTI	ATGAA	3 cut(s)	136, 625, 701
TspRI	CASTG	1 cut(s)	759
VneI	GTGCAC	1 cut(s)	201
VpaK11BI	GGWCC	1 cut(s)	345
XagI	CCTNNNNNAGG	1 cut(s)	340
XapI	RAATTY	2 cut(s)	66, 521
XspI	CTAG	3 cut(s)	242, 303, 771
ZrmI	AGTACT	1 cut(s)	1101

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.