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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G13590 AT5G13590 AT5G13590 AT5G13590 AT5G13590 AT5G13590 |
| fragaria_vesca | FvH4_7g20760 |
| malus_domestica | MD01G1117200.v1.1 MD07G1184600.v1.1 |
| prunus_persica | Prupe.2G224500_v2.0.a1 |
| pyrus_communis | pycom01g14480 pycom07g17670 |
| rosa_chinensis | RchiOBHm_Chr1g0365001 |
| rosa_laevigata | RLG00000027451 |
| rosa_multiflora | Rmu_sc0000418.1_g000009 Rmu_ssc0000112.1_g000020 |
| rosa_roxburghii | Rroxscaffold_1G00022860 Rroxscaffold_2G00110440 Rroxscaffold_4G00291580 Rroxscaffold_4G00292010 |
| rosa_rugosa | Rorug01G0318800 Rorug02G0315200 |
| rosa_samantha | Rh1AG327800 Rh1BG289100 Rh1CG305800 Rh1DG320600 |
| rosa_wichuraiana | Rw1G029060 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 2727, 3612 |
| AarI | CACCTGC | 1 cut(s) | 59 |
| Acc36I | ACCTGC | 1 cut(s) | 59 |
| AccB1I | GGYRCC | 1 cut(s) | 2341 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1441 |
| AccI | GTMKAC | 1 cut(s) | 218 |
| AccII | CGCG | 1 cut(s) | 2685 |
| AciI | CCGC | 6 cut(s) | 406, 1763, 2175, 2685, 2905, 3347 |
| AclI | AACGTT | 1 cut(s) | 1551 |
| AclWI | GGATC | 5 cut(s) | 1331, 1426, 3213, 3291, 3461 |
| AcoI | YGGCCR | 2 cut(s) | 3200, 3752 |
| AcsI | RAATTY | 6 cut(s) | 378, 697, 1144, 2359, 2986, 3433 |
| AcuI | CTGAAG | 4 cut(s) | 144, 209, 1464, 2802 |
| AfaI | GTAC | 6 cut(s) | 186, 995, 2839, 3064, 3129, 3691 |
| AflII | CTTAAG | 1 cut(s) | 706 |
| AflIII | ACRYGT | 1 cut(s) | 3811 |
| AgeI | ACCGGT | 1 cut(s) | 637 |
| AhlI | ACTAGT | 1 cut(s) | 1240 |
| AjiI | CACGTC | 2 cut(s) | 2660, 3584 |
| AjnI | CCWGG | 8 cut(s) | 373, 2337, 2596, 2753, 3176, 3190, 3319, 3754 |
| AleI | CACNNNNGTG | 1 cut(s) | 387 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 2237, 2269 |
| Alw21I | GWGCWC | 3 cut(s) | 1322, 1813, 2923 |
| Alw26I | GTCTC | 8 cut(s) | 17, 959, 2913, 3210, 3270, 3375, 3574, 3623 |
| AlwI | GGATC | 5 cut(s) | 1331, 1426, 3213, 3291, 3461 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 506, 833, 2204 |
| Ama87I | CYCGRG | 4 cut(s) | 210, 1377, 2562, 3471 |
| AoxI | GGCC | 9 cut(s) | 324, 1021, 1133, 3194, 3200, 3307, 3505, 3662, 3752 |
| ApeKI | GCWGC | 4 cut(s) | 500, 726, 2393, 3820 |
| ApoI | RAATTY | 6 cut(s) | 378, 697, 1144, 2359, 2986, 3433 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 3482, 3514 |
| AseI | ATTAAT | 1 cut(s) | 1752 |
| AsiGI | ACCGGT | 1 cut(s) | 637 |
| AspA2I | CCTAGG | 1 cut(s) | 3659 |
| AspLEI | GCGC | 2 cut(s) | 1567, 1733 |
| AvaI | CYCGRG | 4 cut(s) | 210, 1377, 2562, 3471 |
| AvrII | CCTAGG | 1 cut(s) | 3659 |
| BanI | GGYRCC | 1 cut(s) | 2341 |
| BarI | GAAGNNNNNNTAC | 6 cut(s) | 2538, 2570, 2698, 2730, 3055, 3087 |
| BauI | CACGAG | 1 cut(s) | 1812 |
| BbsI | GAAGAC | 1 cut(s) | 1299 |
| Bbv12I | GWGCWC | 3 cut(s) | 1322, 1813, 2923 |
| BbvCI | CCTCAGC | 1 cut(s) | 579 |
| BbvI | GCAGC | 4 cut(s) | 512, 738, 2380, 3832 |
| BceAI | ACGGC | 4 cut(s) | 1021, 1479, 1889, 3187 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 3503, 3537 |
| BciT130I | CCWGG | 8 cut(s) | 375, 2339, 2598, 2755, 3178, 3192, 3321, 3756 |
| BciVI | GTATCC | 3 cut(s) | 1366, 1828, 2395 |
| BcoDI | GTCTC | 8 cut(s) | 17, 959, 2913, 3210, 3270, 3375, 3574, 3623 |
| BcuI | ACTAGT | 1 cut(s) | 1240 |
| BfmI | CTRYAG | 2 cut(s) | 507, 2289 |
| BfrI | CTTAAG | 1 cut(s) | 706 |
| BfuAI | ACCTGC | 1 cut(s) | 59 |
| BfuI | GTATCC | 3 cut(s) | 1366, 1828, 2395 |
| BglII | AGATCT | 2 cut(s) | 2477, 3398 |
| BisI | GCNGC | 4 cut(s) | 501, 727, 2394, 3821 |
| BlnI | CCTAGG | 1 cut(s) | 3659 |
| BlsI | GCNGC | 4 cut(s) | 502, 728, 2395, 3822 |
| BmcAI | AGTACT | 1 cut(s) | 186 |
| Bme1390I | CCNGG | 8 cut(s) | 375, 2339, 2598, 2755, 3178, 3192, 3321, 3756 |
| BmeT110I | CYCGRG | 4 cut(s) | 210, 1377, 2562, 3471 |
| BmgBI | CACGTC | 2 cut(s) | 2660, 3584 |
| BmiI | GGNNCC | 7 cut(s) | 684, 1009, 1989, 2343, 2426, 2652, 3508 |
| BmrFI | CCNGG | 8 cut(s) | 375, 2339, 2598, 2755, 3178, 3192, 3321, 3756 |
| BmrI | ACTGGG | 4 cut(s) | 36, 805, 906, 1221 |
| BmsI | GCATC | 8 cut(s) | 250, 808, 1092, 2218, 2236, 2773, 2954, 2968 |
| BmuI | ACTGGG | 4 cut(s) | 36, 805, 906, 1221 |
| BoxI | GACNNNNGTC | 1 cut(s) | 3387 |
| BpiI | GAAGAC | 1 cut(s) | 1299 |
| BplI | GAGNNNNNCTC | 6 cut(s) | 342, 374, 956, 988, 2893, 2925 |
| BpmI | CTGGAG | 2 cut(s) | 606, 3342 |
| Bpu10I | CCTNAGC | 2 cut(s) | 579, 2397 |
| BpuEI | CTTGAG | 2 cut(s) | 370, 2881 |
| BsaI | GGTCTC | 4 cut(s) | 959, 2913, 3270, 3375 |
| BsaWI | WCCGGW | 3 cut(s) | 637, 663, 1076 |
| Bse118I | RCCGGY | 2 cut(s) | 4, 637 |
| Bse3DI | GCAATG | 2 cut(s) | 306, 1864 |
| BseBI | CCWGG | 8 cut(s) | 375, 2339, 2598, 2755, 3178, 3192, 3321, 3756 |
| BseMI | GCAATG | 2 cut(s) | 306, 1864 |
| BseMII | CTCAG | 5 cut(s) | 195, 438, 570, 1622, 2624 |
| BseRI | GAGGAG | 1 cut(s) | 3148 |
| BseXI | GCAGC | 4 cut(s) | 512, 738, 2380, 3832 |
| BsgI | GTGCAG | 2 cut(s) | 87, 426 |
| Bsh1236I | CGCG | 1 cut(s) | 2685 |
| BshFI | GGCC | 9 cut(s) | 326, 1023, 1135, 3196, 3202, 3309, 3507, 3664, 3754 |
| BshNI | GGYRCC | 1 cut(s) | 2341 |
| BshTI | ACCGGT | 1 cut(s) | 637 |
| BsiHKAI | GWGCWC | 3 cut(s) | 1322, 1813, 2923 |
| BsiHKCI | CYCGRG | 4 cut(s) | 210, 1377, 2562, 3471 |
| BsiSI | CCGG | 5 cut(s) | 5, 638, 664, 1077, 2428 |
| BslFI | GGGAC | 3 cut(s) | 2001, 2735, 3740 |
| BsmAI | GTCTC | 8 cut(s) | 17, 959, 2913, 3210, 3270, 3375, 3574, 3623 |
| BsmBI | CGTCTC | 2 cut(s) | 3210, 3574 |
| BsmFI | GGGAC | 3 cut(s) | 2001, 2735, 3740 |
| BsmI | GAATGC | 3 cut(s) | 1450, 1540, 3514 |
| BsnI | GGCC | 9 cut(s) | 326, 1023, 1135, 3196, 3202, 3309, 3507, 3664, 3754 |
| Bso31I | GGTCTC | 4 cut(s) | 959, 2913, 3270, 3375 |
| BsoBI | CYCGRG | 4 cut(s) | 210, 1377, 2562, 3471 |
| Bsp1286I | GDGCHC | 3 cut(s) | 1322, 1813, 2923 |
| Bsp1407I | TGTACA | 1 cut(s) | 3127 |
| Bsp19I | CCATGG | 2 cut(s) | 3197, 3385 |
| BspACI | CCGC | 6 cut(s) | 406, 1763, 2175, 2685, 2905, 3347 |
| BspANI | GGCC | 9 cut(s) | 326, 1023, 1135, 3196, 3202, 3309, 3507, 3664, 3754 |
| BspCNI | CTCAG | 5 cut(s) | 194, 439, 571, 1621, 2625 |
| BspFNI | CGCG | 1 cut(s) | 2685 |
| BspHI | TCATGA | 1 cut(s) | 99 |
| BspLI | GGNNCC | 7 cut(s) | 684, 1009, 1989, 2343, 2426, 2652, 3508 |
| BspMI | ACCTGC | 1 cut(s) | 59 |
| BspPI | GGATC | 5 cut(s) | 1331, 1426, 3213, 3291, 3461 |
| BspT107I | GGYRCC | 1 cut(s) | 2341 |
| BspTI | CTTAAG | 1 cut(s) | 706 |
| BspTNI | GGTCTC | 4 cut(s) | 959, 2913, 3270, 3375 |
| BsrDI | GCAATG | 2 cut(s) | 306, 1864 |
| BsrFI | RCCGGY | 2 cut(s) | 4, 637 |
| BsrGI | TGTACA | 1 cut(s) | 3127 |
| BssAI | RCCGGY | 2 cut(s) | 4, 637 |
| BssSI | CACGAG | 1 cut(s) | 1812 |
| BssT1I | CCWWGG | 9 cut(s) | 328, 763, 1435, 1623, 2281, 3197, 3385, 3659, 3824 |
| Bst2BI | CACGAG | 1 cut(s) | 1812 |
| Bst2UI | CCWGG | 8 cut(s) | 375, 2339, 2598, 2755, 3178, 3192, 3321, 3756 |
| Bst4CI | ACNGT | 8 cut(s) | 508, 835, 933, 1171, 1185, 1664, 2290, 2458 |
| Bst6I | CTCTTC | 4 cut(s) | 15, 286, 3373, 3857 |
| BstAFI | CTTAAG | 1 cut(s) | 706 |
| BstAUI | TGTACA | 1 cut(s) | 3127 |
| BstC8I | GCNNGC | 2 cut(s) | 570, 1107 |
| BstDEI | CTNAG | 7 cut(s) | 181, 447, 579, 1025, 1608, 2397, 2633 |
| BstDSI | CCRYGG | 2 cut(s) | 3197, 3385 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 2899 |
| BstFNI | CGCG | 1 cut(s) | 2685 |
| BstHHI | GCGC | 2 cut(s) | 1567, 1733 |
| BstMAI | GTCTC | 8 cut(s) | 17, 959, 2913, 3210, 3270, 3375, 3574, 3623 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 500, 3826 |
| BstNI | CCWGG | 8 cut(s) | 375, 2339, 2598, 2755, 3178, 3192, 3321, 3756 |
| BstNSI | RCATGY | 2 cut(s) | 406, 2929 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 3387 |
| BstSCI | CCNGG | 8 cut(s) | 373, 2337, 2596, 2753, 3176, 3190, 3319, 3754 |
| BstSFI | CTRYAG | 2 cut(s) | 507, 2289 |
| BstUI | CGCG | 1 cut(s) | 2685 |
| BstV1I | GCAGC | 4 cut(s) | 512, 738, 2380, 3832 |
| BstV2I | GAAGAC | 1 cut(s) | 1299 |
| BstX2I | RGATCY | 5 cut(s) | 2477, 3218, 3296, 3398, 3466 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2968 |
| BstYI | RGATCY | 5 cut(s) | 2477, 3218, 3296, 3398, 3466 |
| BsuI | GTATCC | 3 cut(s) | 1366, 1828, 2395 |
| BsuRI | GGCC | 9 cut(s) | 326, 1023, 1135, 3196, 3202, 3309, 3507, 3664, 3754 |
| BtgI | CCRYGG | 2 cut(s) | 3197, 3385 |
| BtrI | CACGTC | 2 cut(s) | 2660, 3584 |
| BtsI | GCAGTG | 1 cut(s) | 1266 |
| BtsIMutI | CAGTG | 7 cut(s) | 692, 1058, 1266, 1741, 2312, 2331, 2630 |
| BveI | ACCTGC | 1 cut(s) | 59 |
| Cac8I | GCNNGC | 2 cut(s) | 570, 1107 |
| CaiI | CAGNNNCTG | 3 cut(s) | 506, 833, 2204 |
| CciI | TCATGA | 1 cut(s) | 99 |
| CfoI | GCGC | 2 cut(s) | 1567, 1733 |
| Cfr10I | RCCGGY | 2 cut(s) | 4, 637 |
| Csp6I | GTAC | 6 cut(s) | 185, 994, 2838, 3063, 3128, 3690 |
| CspAI | ACCGGT | 1 cut(s) | 637 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 1350, 1385, 1917, 1952 |
| CviQI | GTAC | 6 cut(s) | 185, 994, 2838, 3063, 3128, 3690 |
| DdeI | CTNAG | 7 cut(s) | 181, 447, 579, 1025, 1608, 2397, 2633 |
| DraI | TTTAAA | 1 cut(s) | 606 |
| EaeI | YGGCCR | 2 cut(s) | 3200, 3752 |
| Eam1104I | CTCTTC | 4 cut(s) | 15, 286, 3373, 3857 |
| EarI | CTCTTC | 4 cut(s) | 15, 286, 3373, 3857 |
| EciI | GGCGGA | 1 cut(s) | 3336 |
| Eco130I | CCWWGG | 9 cut(s) | 328, 763, 1435, 1623, 2281, 3197, 3385, 3659, 3824 |
| Eco147I | AGGCCT | 1 cut(s) | 3664 |
| Eco31I | GGTCTC | 4 cut(s) | 959, 2913, 3270, 3375 |
| Eco57I | CTGAAG | 4 cut(s) | 144, 209, 1464, 2802 |
| Eco88I | CYCGRG | 4 cut(s) | 210, 1377, 2562, 3471 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 2899 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1988 |
| EcoRI | GAATTC | 1 cut(s) | 378 |
| EcoRII | CCWGG | 8 cut(s) | 373, 2337, 2596, 2753, 3176, 3190, 3319, 3754 |
| EcoT14I | CCWWGG | 9 cut(s) | 328, 763, 1435, 1623, 2281, 3197, 3385, 3659, 3824 |
| EcoT22I | ATGCAT | 4 cut(s) | 823, 1561, 2969, 3516 |
| ErhI | CCWWGG | 9 cut(s) | 328, 763, 1435, 1623, 2281, 3197, 3385, 3659, 3824 |
| Esp3I | CGTCTC | 2 cut(s) | 3210, 3574 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 405, 437, 410, 442, 2034, 2066 |
| FaqI | GGGAC | 3 cut(s) | 2001, 2735, 3740 |
| FauNDI | CATATG | 3 cut(s) | 1561, 2581, 3076 |
| FblI | GTMKAC | 1 cut(s) | 218 |
| Fnu4HI | GCNGC | 4 cut(s) | 501, 727, 2394, 3821 |
| Fsp4HI | GCNGC | 4 cut(s) | 501, 727, 2394, 3821 |
| GlaI | GCGC | 2 cut(s) | 1566, 1732 |
| GluI | GCNGC | 4 cut(s) | 501, 727, 2394, 3821 |
| GsuI | CTGGAG | 2 cut(s) | 606, 3342 |
| HaeIII | GGCC | 9 cut(s) | 326, 1023, 1135, 3196, 3202, 3309, 3507, 3664, 3754 |
| HapII | CCGG | 5 cut(s) | 5, 638, 664, 1077, 2428 |
| HhaI | GCGC | 2 cut(s) | 1567, 1733 |
| Hin6I | GCGC | 2 cut(s) | 1565, 1731 |
| HinP1I | GCGC | 2 cut(s) | 1565, 1731 |
| HincII | GTYRAC | 6 cut(s) | 219, 453, 919, 1213, 2196, 2587 |
| HindII | GTYRAC | 6 cut(s) | 219, 453, 919, 1213, 2196, 2587 |
| HindIII | AAGCTT | 2 cut(s) | 419, 1575 |
| HpaI | GTTAAC | 2 cut(s) | 919, 1213 |
| HpaII | CCGG | 5 cut(s) | 5, 638, 664, 1077, 2428 |
| HpyCH4III | ACNGT | 8 cut(s) | 508, 835, 933, 1171, 1185, 1664, 2290, 2458 |
| HpyCH4IV | ACGT | 6 cut(s) | 1215, 1551, 2659, 3583, 3813, 3851 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 500, 3826 |
| HpyF3I | CTNAG | 7 cut(s) | 181, 447, 579, 1025, 1608, 2397, 2633 |
| HpySE526I | ACGT | 6 cut(s) | 1215, 1551, 2659, 3583, 3813, 3851 |
| HspAI | GCGC | 2 cut(s) | 1565, 1731 |
| KspAI | GTTAAC | 2 cut(s) | 919, 1213 |
| Lsp1109I | GCAGC | 4 cut(s) | 512, 738, 2380, 3832 |
| LweI | GCATC | 8 cut(s) | 250, 808, 1092, 2218, 2236, 2773, 2954, 2968 |
| MaeII | ACGT | 6 cut(s) | 1215, 1551, 2659, 3583, 3813, 3851 |
| MfeI | CAATTG | 1 cut(s) | 1395 |
| MflI | RGATCY | 5 cut(s) | 2477, 3218, 3296, 3398, 3466 |
| MhlI | GDGCHC | 3 cut(s) | 1322, 1813, 2923 |
| MlyI | GAGTC | 9 cut(s) | 112, 173, 214, 360, 1281, 1895, 2348, 3175, 3427 |
| MmeI | TCCRAC | 6 cut(s) | 886, 1026, 1438, 2491, 2974, 3410 |
| Mph1103I | ATGCAT | 4 cut(s) | 823, 1561, 2969, 3516 |
| MslI | CAYNNNNRTG | 5 cut(s) | 387, 1455, 2763, 3642, 3834 |
| MspA1I | CMGCKG | 1 cut(s) | 2175 |
| MspCI | CTTAAG | 1 cut(s) | 706 |
| MspI | CCGG | 5 cut(s) | 5, 638, 664, 1077, 2428 |
| MspR9I | CCNGG | 8 cut(s) | 375, 2339, 2598, 2755, 3178, 3192, 3321, 3756 |
| MunI | CAATTG | 1 cut(s) | 1395 |
| Mva1269I | GAATGC | 3 cut(s) | 1450, 1540, 3514 |
| MvaI | CCWGG | 8 cut(s) | 375, 2339, 2598, 2755, 3178, 3192, 3321, 3756 |
| MvnI | CGCG | 1 cut(s) | 2685 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 500, 3826 |
| NcoI | CCATGG | 2 cut(s) | 3197, 3385 |
| NdeI | CATATG | 3 cut(s) | 1561, 2581, 3076 |
| NlaIV | GGNNCC | 7 cut(s) | 684, 1009, 1989, 2343, 2426, 2652, 3508 |
| NmuCI | GTSAC | 7 cut(s) | 40, 690, 1457, 1531, 2266, 2351, 3852 |
| NsiI | ATGCAT | 4 cut(s) | 823, 1561, 2969, 3516 |
| NspI | RCATGY | 2 cut(s) | 406, 2929 |
| OliI | CACNNNNGTG | 1 cut(s) | 387 |
| PaeR7I | CTCGAG | 3 cut(s) | 1377, 2562, 3471 |
| PagI | TCATGA | 1 cut(s) | 99 |
| PaqCI | CACCTGC | 1 cut(s) | 59 |
| PceI | AGGCCT | 1 cut(s) | 3664 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1953 |
| PctI | GAATGC | 3 cut(s) | 1450, 1540, 3514 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1441 |
| PfoI | TCCNGGA | 2 cut(s) | 3176, 3319 |
| PinAI | ACCGGT | 1 cut(s) | 637 |
| PkrI | GCNGC | 4 cut(s) | 502, 728, 2395, 3822 |
| PleI | GAGTC | 9 cut(s) | 111, 173, 214, 359, 1280, 1894, 2348, 3175, 3426 |
| PpsI | GAGTC | 9 cut(s) | 111, 173, 214, 359, 1280, 1894, 2348, 3175, 3426 |
| PpuMI | RGGWCCY | 1 cut(s) | 1988 |
| PshAI | GACNNNNGTC | 1 cut(s) | 3387 |
| PshBI | ATTAAT | 1 cut(s) | 1752 |
| PsiI | TTATAA | 2 cut(s) | 2727, 3612 |
| Psp1406I | AACGTT | 1 cut(s) | 1551 |
| Psp5II | RGGWCCY | 1 cut(s) | 1988 |
| Psp6I | CCWGG | 8 cut(s) | 373, 2337, 2596, 2753, 3176, 3190, 3319, 3754 |
| PspGI | CCWGG | 8 cut(s) | 373, 2337, 2596, 2753, 3176, 3190, 3319, 3754 |
| PspN4I | GGNNCC | 7 cut(s) | 684, 1009, 1989, 2343, 2426, 2652, 3508 |
| PspPPI | RGGWCCY | 1 cut(s) | 1988 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 229, 261 |
| PstNI | CAGNNNCTG | 3 cut(s) | 506, 833, 2204 |
| PsuI | RGATCY | 5 cut(s) | 2477, 3218, 3296, 3398, 3466 |
| RsaI | GTAC | 6 cut(s) | 186, 995, 2839, 3064, 3129, 3691 |
| RsaNI | GTAC | 6 cut(s) | 185, 994, 2838, 3063, 3128, 3690 |
| RseI | CAYNNNNRTG | 5 cut(s) | 387, 1455, 2763, 3642, 3834 |
| SalI | GTCGAC | 1 cut(s) | 217 |
| SatI | GCNGC | 4 cut(s) | 501, 727, 2394, 3821 |
| ScaI | AGTACT | 1 cut(s) | 186 |
| SchI | GAGTC | 9 cut(s) | 112, 173, 214, 360, 1281, 1895, 2348, 3175, 3427 |
| ScrFI | CCNGG | 8 cut(s) | 375, 2339, 2598, 2755, 3178, 3192, 3321, 3756 |
| SduI | GDGCHC | 3 cut(s) | 1322, 1813, 2923 |
| SfaNI | GCATC | 8 cut(s) | 250, 808, 1092, 2218, 2236, 2773, 2954, 2968 |
| SfcI | CTRYAG | 2 cut(s) | 507, 2289 |
| Sfr274I | CTCGAG | 3 cut(s) | 1377, 2562, 3471 |
| SlaI | CTCGAG | 3 cut(s) | 1377, 2562, 3471 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 387, 1455, 2763, 3642, 3834 |
| SmlI | CTYRAG | 6 cut(s) | 385, 706, 1377, 2562, 2896, 3471 |
| SmoI | CTYRAG | 6 cut(s) | 385, 706, 1377, 2562, 2896, 3471 |
| SpeI | ACTAGT | 1 cut(s) | 1240 |
| SseBI | AGGCCT | 1 cut(s) | 3664 |
| SsiI | CCGC | 6 cut(s) | 406, 1763, 2175, 2685, 2905, 3347 |
| SspI | AATATT | 3 cut(s) | 1657, 2523, 2950 |
| StuI | AGGCCT | 1 cut(s) | 3664 |
| StyD4I | CCNGG | 8 cut(s) | 373, 2337, 2596, 2753, 3176, 3190, 3319, 3754 |
| StyI | CCWWGG | 9 cut(s) | 328, 763, 1435, 1623, 2281, 3197, 3385, 3659, 3824 |
| TaaI | ACNGT | 8 cut(s) | 508, 835, 933, 1171, 1185, 1664, 2290, 2458 |
| TaiI | ACGT | 6 cut(s) | 1218, 1554, 2662, 3586, 3816, 3854 |
| TaqII | GACCGA | 1 cut(s) | 3144 |
| TatI | WGTACW | 3 cut(s) | 184, 993, 3127 |
| TscAI | CASTG | 7 cut(s) | 699, 1058, 1266, 1741, 2312, 2338, 2637 |
| TseFI | GTSAC | 7 cut(s) | 40, 690, 1457, 1531, 2266, 2351, 3852 |
| TseI | GCWGC | 4 cut(s) | 500, 726, 2393, 3820 |
| Tsp45I | GTSAC | 7 cut(s) | 40, 690, 1457, 1531, 2266, 2351, 3852 |
| TspGWI | ACGGA | 4 cut(s) | 1991, 2437, 2555, 3584 |
| TspRI | CASTG | 7 cut(s) | 699, 1058, 1266, 1741, 2312, 2338, 2637 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1441 |
| Vha464I | CTTAAG | 1 cut(s) | 706 |
| VspI | ATTAAT | 1 cut(s) | 1752 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 2899 |
| XapI | RAATTY | 6 cut(s) | 378, 697, 1144, 2359, 2986, 3433 |
| XceI | RCATGY | 2 cut(s) | 406, 2929 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 819 |
| XhoI | CTCGAG | 3 cut(s) | 1377, 2562, 3471 |
| XmaJI | CCTAGG | 1 cut(s) | 3659 |
| XmiI | GTMKAC | 1 cut(s) | 218 |
| ZrmI | AGTACT | 1 cut(s) | 186 |
| Zsp2I | ATGCAT | 4 cut(s) | 823, 1561, 2969, 3516 |