Rroxscaffold_2G00110440

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Forward (+)
34725238 .. 34727527
2290 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00110440.1

Sequence Viewer

Length: 207 bp
ATGTATAGCTTACATGTGTCTGATGCTTATGTTGTGATTAGAAATAAGTTATTTTGTATGTTTTCTTTTCATAATCATGATGTTAGTAATTTGGTTAAACATGTGGTAAATGGTTCAGATGATTGTCCTTTTGACATGAAATTGCCTGTTGCCGCCGAGATATCTCACCCTGTTGGACTGGGCAGCCTTCTTGTTCAACAGAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

68

Amino Acids

7.56

Weight (kDa)

6.13

Isoelectric Point (pI)

48.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 153
AflIII ACRYGT 2 cut(s) 13, 100
AgsI TTSAA 1 cut(s) 197
AluBI AGCT 1 cut(s) 9
AluI AGCT 1 cut(s) 9
ApeKI GCWGC 1 cut(s) 183
AsuHPI GGTGA 1 cut(s) 158
BbvI GCAGC 1 cut(s) 195
BisI GCNGC 2 cut(s) 153, 184
BlsI GCNGC 2 cut(s) 154, 185
BmrI ACTGGG 1 cut(s) 188
BmsI GCATC 1 cut(s) 13
BmuI ACTGGG 1 cut(s) 188
Bse1I ACTGG 1 cut(s) 183
BseNI ACTGG 1 cut(s) 183
BseXI GCAGC 1 cut(s) 195
BspACI CCGC 1 cut(s) 153
BspHI TCATGA 1 cut(s) 76
BsrI ACTGG 1 cut(s) 183
BstNSI RCATGY 2 cut(s) 17, 104
BstV1I GCAGC 1 cut(s) 195
CciI TCATGA 1 cut(s) 76
CviAII CATG 4 cut(s) 14, 77, 101, 136
CviJI RGCY 2 cut(s) 9, 186
CviKI_1 RGCY 2 cut(s) 9, 186
Eco32I GATATC 1 cut(s) 162
EcoRV GATATC 1 cut(s) 162
FaeI CATG 4 cut(s) 17, 80, 104, 139
FaiI YATR 8 cut(s) 6, 15, 30, 59, 72, 78, 102, 137
FatI CATG 4 cut(s) 13, 76, 100, 135
Fnu4HI GCNGC 2 cut(s) 153, 184
Fsp4HI GCNGC 2 cut(s) 153, 184
GluI GCNGC 2 cut(s) 153, 184
Hin1II CATG 4 cut(s) 17, 80, 104, 139
HphI GGTGA 1 cut(s) 158
Hpy188I TCNGA 2 cut(s) 22, 118
Hpy188III TCNNGA 1 cut(s) 77
HpyAV CCTTC 1 cut(s) 197
Hsp92II CATG 4 cut(s) 17, 80, 104, 139
LpnPI CCDG 3 cut(s) 159, 164, 183
Lsp1109I GCAGC 1 cut(s) 195
LweI GCATC 1 cut(s) 13
MluCI AATT 2 cut(s) 88, 140
MmeI TCCRAC 1 cut(s) 154
MseI TTAA 1 cut(s) 96
MslI CAYNNNNRTG 1 cut(s) 75
NlaIII CATG 4 cut(s) 17, 80, 104, 139
NmeAIII GCCGAG 1 cut(s) 181
NspI RCATGY 2 cut(s) 17, 104
PagI TCATGA 1 cut(s) 76
PciI ACATGT 2 cut(s) 13, 100
PkrI GCNGC 2 cut(s) 154, 185
PscI ACATGT 2 cut(s) 13, 100
RseI CAYNNNNRTG 1 cut(s) 75
SaqAI TTAA 1 cut(s) 96
SatI GCNGC 2 cut(s) 153, 184
SetI ASST 1 cut(s) 11
SfaNI GCATC 1 cut(s) 13
SgeI CNNG 9 cut(s) 26, 89, 113, 148, 158, 169, 182, 191, 203
SmiMI CAYNNNNRTG 1 cut(s) 75
Sse9I AATT 2 cut(s) 88, 140
SsiI CCGC 1 cut(s) 153
TasI AATT 2 cut(s) 88, 140
TauI GCSGC 1 cut(s) 155
Tru1I TTAA 1 cut(s) 96
Tru9I TTAA 1 cut(s) 96
TseI GCWGC 1 cut(s) 183
TspDTI ATGAA 2 cut(s) 59, 152
XceI RCATGY 2 cut(s) 17, 104
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.