No description available
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G13590 AT5G13590 AT5G13590 AT5G13590 AT5G13590 AT5G13590 |
| fragaria_vesca | FvH4_7g20760 |
| malus_domestica | MD01G1117200.v1.1 MD07G1184600.v1.1 |
| prunus_persica | Prupe.2G224500_v2.0.a1 |
| pyrus_communis | pycom01g14480 pycom07g17670 |
| rosa_chinensis | RchiOBHm_Chr1g0365001 |
| rosa_laevigata | RLG00000027451 |
| rosa_multiflora | Rmu_sc0000418.1_g000009 Rmu_ssc0000112.1_g000020 |
| rosa_roxburghii | Rroxscaffold_1G00022860 Rroxscaffold_2G00110440 Rroxscaffold_4G00291580 Rroxscaffold_4G00292010 |
| rosa_rugosa | Rorug01G0318800 Rorug02G0315200 |
| rosa_samantha | Rh1AG327800 Rh1BG289100 Rh1CG305800 Rh1DG320600 |
| rosa_wichuraiana | Rw1G029060 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 4 cut(s) | 2468, 2754, 2832, 3639 |
| AarI | CACCTGC | 1 cut(s) | 59 |
| AasI | GACNNNNNNGTC | 2 cut(s) | 961, 1360 |
| AbsI | CCTCGAGG | 1 cut(s) | 2595 |
| Acc36I | ACCTGC | 2 cut(s) | 59, 2569 |
| Acc65I | GGTACC | 1 cut(s) | 2643 |
| AccB1I | GGYRCC | 1 cut(s) | 2643 |
| AccBSI | CCGCTC | 2 cut(s) | 524, 2641 |
| AccI | GTMKAC | 4 cut(s) | 197, 1364, 1496, 2908 |
| AccIII | TCCGGA | 1 cut(s) | 1411 |
| AciI | CCGC | 9 cut(s) | 5, 524, 2455, 2641, 2741, 3329, 3368, 3500, 3521 |
| AclWI | GGATC | 7 cut(s) | 854, 1301, 1308, 3068, 3240, 3312, 3479 |
| AcoI | YGGCCR | 1 cut(s) | 2860 |
| AcsI | RAATTY | 9 cut(s) | 234, 457, 679, 1298, 2553, 2665, 2674, 2974, 3829 |
| AcuI | CTGAAG | 5 cut(s) | 147, 360, 492, 2826, 2994 |
| AfaI | GTAC | 7 cut(s) | 165, 568, 1795, 2645, 2768, 3091, 3622 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 11, 45, 190, 652, 2035, 2634, 2936, 3328 |
| AflIII | ACRYGT | 1 cut(s) | 1396 |
| AhlI | ACTAGT | 1 cut(s) | 224 |
| AjiI | CACGTC | 1 cut(s) | 2684 |
| AjnI | CCWGG | 6 cut(s) | 44, 256, 1620, 1914, 3268, 3781 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 3199, 3231 |
| Alw21I | GWGCWC | 4 cut(s) | 754, 1926, 2189, 2338 |
| AlwI | GGATC | 7 cut(s) | 854, 1301, 1308, 3068, 3240, 3312, 3479 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 836 |
| Ama87I | CYCGRG | 2 cut(s) | 2595, 3489 |
| Aor13HI | TCCGGA | 1 cut(s) | 1411 |
| ApeKI | GCWGC | 5 cut(s) | 1097, 1448, 1504, 1576, 2738 |
| ApoI | RAATTY | 9 cut(s) | 234, 457, 679, 1298, 2553, 2665, 2674, 2974, 3829 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 1477, 2373, 3211 |
| Asp718I | GGTACC | 1 cut(s) | 2643 |
| AspA2I | CCTAGG | 2 cut(s) | 1109, 3686 |
| AsuHPI | GGTGA | 8 cut(s) | 108, 635, 2429, 2618, 3011, 3611, 3665, 3725 |
| AvaI | CYCGRG | 2 cut(s) | 2595, 3489 |
| AvrII | CCTAGG | 2 cut(s) | 1109, 3686 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1896, 1929 |
| BanI | GGYRCC | 1 cut(s) | 2643 |
| BanII | GRGCYC | 2 cut(s) | 1926, 2189 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 3082, 3114 |
| BauI | CACGAG | 1 cut(s) | 1722 |
| Bbv12I | GWGCWC | 4 cut(s) | 754, 1926, 2189, 2338 |
| BbvCI | CCTCAGC | 1 cut(s) | 561 |
| BbvI | GCAGC | 5 cut(s) | 1084, 1435, 1516, 1563, 2750 |
| BceAI | ACGGC | 1 cut(s) | 2847 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 3527, 3561 |
| BciT130I | CCWGG | 6 cut(s) | 46, 258, 1622, 1916, 3270, 3783 |
| BciVI | GTATCC | 4 cut(s) | 1897, 2335, 2428, 3385 |
| BclI | TGATCA | 3 cut(s) | 1705, 2083, 2239 |
| BcuI | ACTAGT | 1 cut(s) | 224 |
| BfmI | CTRYAG | 6 cut(s) | 1449, 1824, 2304, 2322, 2629, 3069 |
| BfuAI | ACCTGC | 2 cut(s) | 59, 2569 |
| BfuI | GTATCC | 4 cut(s) | 1897, 2335, 2428, 3385 |
| BglII | AGATCT | 1 cut(s) | 2107 |
| BisI | GCNGC | 7 cut(s) | 5, 1098, 1449, 1505, 1577, 2739, 3330 |
| BlnI | CCTAGG | 2 cut(s) | 1109, 3686 |
| BlsI | GCNGC | 7 cut(s) | 6, 1099, 1450, 1506, 1578, 2740, 3331 |
| Bme1390I | CCNGG | 6 cut(s) | 46, 258, 1622, 1916, 3270, 3783 |
| BmeT110I | CYCGRG | 2 cut(s) | 2595, 3489 |
| BmgBI | CACGTC | 1 cut(s) | 2684 |
| BmrFI | CCNGG | 6 cut(s) | 46, 258, 1622, 1916, 3270, 3783 |
| BmrI | ACTGGG | 4 cut(s) | 36, 787, 1194, 1509 |
| BmsI | GCATC | 8 cut(s) | 232, 537, 790, 814, 2266, 2981, 3316, 3341 |
| BmuI | ACTGGG | 4 cut(s) | 36, 787, 1194, 1509 |
| BoxI | GACNNNNGTC | 1 cut(s) | 3408 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 2273, 2305, 2911, 2943 |
| BpmI | CTGGAG | 3 cut(s) | 813, 3291, 3363 |
| Bpu10I | CCTNAGC | 2 cut(s) | 561, 2337 |
| BpuEI | CTTGAG | 2 cut(s) | 1358, 2899 |
| BsaBI | GATNNNNATC | 4 cut(s) | 1815, 2106, 2509, 3316 |
| BsaI | GGTCTC | 5 cut(s) | 100, 457, 2499, 2931, 3396 |
| BsaWI | WCCGGW | 2 cut(s) | 1411, 3696 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 11, 45, 190, 652, 2035, 2634, 2936, 3328 |
| Bse1I | ACTGG | 9 cut(s) | 31, 782, 830, 1200, 1392, 1504, 1740, 2439, 3346 |
| Bse3DI | GCAATG | 1 cut(s) | 1065 |
| Bse8I | GATNNNNATC | 4 cut(s) | 1815, 2106, 2509, 3316 |
| BseAI | TCCGGA | 1 cut(s) | 1411 |
| BseBI | CCWGG | 6 cut(s) | 46, 258, 1622, 1916, 3270, 3783 |
| BseJI | GATNNNNATC | 4 cut(s) | 1815, 2106, 2509, 3316 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 11, 45, 190, 652, 2035, 2634, 2936, 3328 |
| BseMI | GCAATG | 1 cut(s) | 1065 |
| BseMII | CTCAG | 9 cut(s) | 203, 552, 767, 924, 1550, 2181, 2337, 2351, 3711 |
| BseNI | ACTGG | 9 cut(s) | 31, 782, 830, 1200, 1392, 1504, 1740, 2439, 3346 |
| BseRI | GAGGAG | 3 cut(s) | 1267, 2266, 3601 |
| BseXI | GCAGC | 5 cut(s) | 1084, 1435, 1516, 1563, 2750 |
| BsgI | GTGCAG | 1 cut(s) | 408 |
| BshNI | GGYRCC | 1 cut(s) | 2643 |
| BsiHKAI | GWGCWC | 4 cut(s) | 754, 1926, 2189, 2338 |
| BsiHKCI | CYCGRG | 2 cut(s) | 2595, 3489 |
| BsiSI | CCGG | 3 cut(s) | 1412, 2461, 3697 |
| BslFI | GGGAC | 5 cut(s) | 879, 1224, 2010, 2952, 3624 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 11, 45, 190, 652, 2035, 2634, 2936, 3328 |
| BsmBI | CGTCTC | 3 cut(s) | 1346, 2914, 3598 |
| BsmFI | GGGAC | 5 cut(s) | 879, 1224, 2010, 2952, 3624 |
| BsmI | GAATGC | 2 cut(s) | 3426, 3538 |
| Bso31I | GGTCTC | 5 cut(s) | 100, 457, 2499, 2931, 3396 |
| BsoBI | CYCGRG | 2 cut(s) | 2595, 3489 |
| Bsp1286I | GDGCHC | 4 cut(s) | 754, 1926, 2189, 2338 |
| Bsp13I | TCCGGA | 1 cut(s) | 1411 |
| Bsp19I | CCATGG | 4 cut(s) | 745, 3224, 3406, 3851 |
| BspACI | CCGC | 9 cut(s) | 5, 524, 2455, 2641, 2741, 3329, 3368, 3500, 3521 |
| BspCNI | CTCAG | 9 cut(s) | 202, 553, 766, 923, 1549, 2182, 2338, 2350, 3712 |
| BspEI | TCCGGA | 1 cut(s) | 1411 |
| BspHI | TCATGA | 1 cut(s) | 2086 |
| BspMAI | CTGCAG | 2 cut(s) | 1453, 2326 |
| BspMI | ACCTGC | 2 cut(s) | 59, 2569 |
| BspPI | GGATC | 7 cut(s) | 854, 1301, 1308, 3068, 3240, 3312, 3479 |
| BspT107I | GGYRCC | 1 cut(s) | 2643 |
| BspTNI | GGTCTC | 5 cut(s) | 100, 457, 2499, 2931, 3396 |
| BsrBI | CCGCTC | 2 cut(s) | 524, 2641 |
| BsrDI | GCAATG | 1 cut(s) | 1065 |
| BsrI | ACTGG | 9 cut(s) | 31, 782, 830, 1200, 1392, 1504, 1740, 2439, 3346 |
| BssNAI | GTATAC | 1 cut(s) | 2909 |
| BssSI | CACGAG | 1 cut(s) | 1722 |
| BssT1I | CCWWGG | 8 cut(s) | 310, 745, 1109, 2314, 3224, 3406, 3686, 3851 |
| Bst1107I | GTATAC | 1 cut(s) | 2909 |
| Bst2BI | CACGAG | 1 cut(s) | 1722 |
| Bst2UI | CCWGG | 6 cut(s) | 46, 258, 1622, 1916, 3270, 3783 |
| Bst6I | CTCTTC | 6 cut(s) | 15, 268, 537, 1008, 2542, 3884 |
| BstC8I | GCNNGC | 4 cut(s) | 762, 980, 2153, 2453 |
| BstDSI | CCRYGG | 6 cut(s) | 745, 2707, 2863, 3224, 3406, 3851 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 2632 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 251, 770, 988, 2193, 2457 |
| BstNI | CCWGG | 6 cut(s) | 46, 258, 1622, 1916, 3270, 3783 |
| BstNSI | RCATGY | 4 cut(s) | 768, 872, 1400, 1651 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 3408 |
| BstSCI | CCNGG | 6 cut(s) | 44, 256, 1620, 1914, 3268, 3781 |
| BstSFI | CTRYAG | 6 cut(s) | 1449, 1824, 2304, 2322, 2629, 3069 |
| BstV1I | GCAGC | 5 cut(s) | 1084, 1435, 1516, 1563, 2750 |
| BstX2I | RGATCY | 6 cut(s) | 1313, 2107, 3073, 3245, 3317, 3484 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1207 |
| BstYI | RGATCY | 6 cut(s) | 1313, 2107, 3073, 3245, 3317, 3484 |
| BstZ17I | GTATAC | 1 cut(s) | 2909 |
| BsuI | GTATCC | 4 cut(s) | 1897, 2335, 2428, 3385 |
| BtgI | CCRYGG | 6 cut(s) | 745, 2707, 2863, 3224, 3406, 3851 |
| BtgZI | GCGATG | 1 cut(s) | 3855 |
| BtrI | CACGTC | 1 cut(s) | 2684 |
| BtsI | GCAGTG | 1 cut(s) | 1031 |
| BtsIMutI | CAGTG | 8 cut(s) | 712, 856, 1031, 1257, 1747, 2214, 2676, 3649 |
| BveI | ACCTGC | 2 cut(s) | 59, 2569 |
| Cac8I | GCNNGC | 4 cut(s) | 762, 980, 2153, 2453 |
| CaiI | CAGNNNCTG | 1 cut(s) | 836 |
| CciI | TCATGA | 1 cut(s) | 2086 |
| CseI | GACGC | 1 cut(s) | 2816 |
| Csp6I | GTAC | 7 cut(s) | 164, 567, 1794, 2644, 2767, 3090, 3621 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1926, 1961 |
| CviQI | GTAC | 7 cut(s) | 164, 567, 1794, 2644, 2767, 3090, 3621 |
| DraI | TTTAAA | 1 cut(s) | 2487 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 961, 1360 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 961, 1360 |
| EaeI | YGGCCR | 1 cut(s) | 2860 |
| Eam1104I | CTCTTC | 6 cut(s) | 15, 268, 537, 1008, 2542, 3884 |
| EarI | CTCTTC | 6 cut(s) | 15, 268, 537, 1008, 2542, 3884 |
| EciI | GGCGGA | 2 cut(s) | 3357, 3515 |
| Ecl136II | GAGCTC | 2 cut(s) | 1924, 2187 |
| Eco130I | CCWWGG | 8 cut(s) | 310, 745, 1109, 2314, 3224, 3406, 3686, 3851 |
| Eco147I | AGGCCT | 2 cut(s) | 3631, 3691 |
| Eco24I | GRGCYC | 2 cut(s) | 1926, 2189 |
| Eco31I | GGTCTC | 5 cut(s) | 100, 457, 2499, 2931, 3396 |
| Eco32I | GATATC | 2 cut(s) | 1458, 3877 |
| Eco53kI | GAGCTC | 2 cut(s) | 1924, 2187 |
| Eco57I | CTGAAG | 5 cut(s) | 147, 360, 492, 2826, 2994 |
| Eco88I | CYCGRG | 2 cut(s) | 2595, 3489 |
| EcoICRI | GAGCTC | 2 cut(s) | 1924, 2187 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 2632 |
| EcoO109I | RGGNCCY | 5 cut(s) | 1997, 2939, 3144, 3530, 3611 |
| EcoRI | GAATTC | 1 cut(s) | 2665 |
| EcoRII | CCWGG | 6 cut(s) | 44, 256, 1620, 1914, 3268, 3781 |
| EcoRV | GATATC | 2 cut(s) | 1458, 3877 |
| EcoT14I | CCWWGG | 8 cut(s) | 310, 745, 1109, 2314, 3224, 3406, 3686, 3851 |
| EcoT22I | ATGCAT | 4 cut(s) | 510, 805, 2996, 3540 |
| EcoT38I | GRGCYC | 2 cut(s) | 1926, 2189 |
| ErhI | CCWWGG | 8 cut(s) | 310, 745, 1109, 2314, 3224, 3406, 3686, 3851 |
| Esp3I | CGTCTC | 3 cut(s) | 1346, 2914, 3598 |
| FaqI | GGGAC | 5 cut(s) | 879, 1224, 2010, 2952, 3624 |
| FauI | CCCGC | 1 cut(s) | 3514 |
| FauNDI | CATATG | 1 cut(s) | 3103 |
| FbaI | TGATCA | 3 cut(s) | 1705, 2083, 2239 |
| FblI | GTMKAC | 4 cut(s) | 197, 1364, 1496, 2908 |
| Fnu4HI | GCNGC | 7 cut(s) | 5, 1098, 1449, 1505, 1577, 2739, 3330 |
| FriOI | GRGCYC | 2 cut(s) | 1926, 2189 |
| Fsp4HI | GCNGC | 7 cut(s) | 5, 1098, 1449, 1505, 1577, 2739, 3330 |
| GluI | GCNGC | 7 cut(s) | 5, 1098, 1449, 1505, 1577, 2739, 3330 |
| GsuI | CTGGAG | 3 cut(s) | 813, 3291, 3363 |
| HapII | CCGG | 3 cut(s) | 1412, 2461, 3697 |
| HgaI | GACGC | 1 cut(s) | 2816 |
| HincII | GTYRAC | 5 cut(s) | 198, 1497, 1527, 2620, 3670 |
| HindII | GTYRAC | 5 cut(s) | 198, 1497, 1527, 2620, 3670 |
| HindIII | AAGCTT | 3 cut(s) | 1587, 2876, 3041 |
| HpaI | GTTAAC | 1 cut(s) | 3670 |
| HpaII | CCGG | 3 cut(s) | 1412, 2461, 3697 |
| HphI | GGTGA | 8 cut(s) | 108, 635, 2429, 2618, 3011, 3611, 3665, 3725 |
| Hpy166II | GTNNAC | 9 cut(s) | 198, 1273, 1365, 1497, 1527, 1642, 2620, 2909, 3670 |
| Hpy8I | GTNNAC | 9 cut(s) | 198, 1273, 1365, 1497, 1527, 1642, 2620, 2909, 3670 |
| HpyCH4IV | ACGT | 3 cut(s) | 595, 2612, 2683 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 251, 770, 988, 2193, 2457 |
| HpySE526I | ACGT | 3 cut(s) | 595, 2612, 2683 |
| Kpn2I | TCCGGA | 1 cut(s) | 1411 |
| KpnI | GGTACC | 1 cut(s) | 2647 |
| Ksp22I | TGATCA | 3 cut(s) | 1705, 2083, 2239 |
| KspAI | GTTAAC | 1 cut(s) | 3670 |
| LmnI | GCTCC | 9 cut(s) | 259, 481, 832, 1265, 2293, 2457, 2638, 2743, 3837 |
| Lsp1109I | GCAGC | 5 cut(s) | 1084, 1435, 1516, 1563, 2750 |
| LweI | GCATC | 8 cut(s) | 232, 537, 790, 814, 2266, 2981, 3316, 3341 |
| MaeII | ACGT | 3 cut(s) | 595, 2612, 2683 |
| MaeIII | GTNAC | 8 cut(s) | 40, 641, 935, 1531, 2218, 2299, 2566, 2729 |
| MbiI | CCGCTC | 2 cut(s) | 524, 2641 |
| MfeI | CAATTG | 1 cut(s) | 882 |
| MflI | RGATCY | 6 cut(s) | 1313, 2107, 3073, 3245, 3317, 3484 |
| MhlI | GDGCHC | 4 cut(s) | 754, 1926, 2189, 2338 |
| MlyI | GAGTC | 9 cut(s) | 342, 649, 943, 1194, 1502, 1528, 1556, 1943, 3445 |
| MmeI | TCCRAC | 3 cut(s) | 1059, 1243, 1408 |
| Mph1103I | ATGCAT | 4 cut(s) | 510, 805, 2996, 3540 |
| MroI | TCCGGA | 1 cut(s) | 1411 |
| MroXI | GAANNNNTTC | 3 cut(s) | 1477, 2373, 3211 |
| MslI | CAYNNNNRTG | 2 cut(s) | 213, 2787 |
| MspA1I | CMGCKG | 2 cut(s) | 2455, 2741 |
| MspI | CCGG | 3 cut(s) | 1412, 2461, 3697 |
| MspR9I | CCNGG | 6 cut(s) | 46, 258, 1622, 1916, 3270, 3783 |
| MunI | CAATTG | 1 cut(s) | 882 |
| Mva1269I | GAATGC | 2 cut(s) | 3426, 3538 |
| MvaI | CCWGG | 6 cut(s) | 46, 258, 1622, 1916, 3270, 3783 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 251, 770, 988, 2193, 2457 |
| NcoI | CCATGG | 4 cut(s) | 745, 3224, 3406, 3851 |
| NdeI | CATATG | 1 cut(s) | 3103 |
| NmuCI | GTSAC | 5 cut(s) | 641, 935, 1531, 2218, 2299 |
| NsiI | ATGCAT | 4 cut(s) | 510, 805, 2996, 3540 |
| NspI | RCATGY | 4 cut(s) | 768, 872, 1400, 1651 |
| PaeR7I | CTCGAG | 2 cut(s) | 2595, 3489 |
| PagI | TCATGA | 1 cut(s) | 2086 |
| PaqCI | CACCTGC | 1 cut(s) | 59 |
| PasI | CCCWGGG | 1 cut(s) | 1621 |
| PceI | AGGCCT | 2 cut(s) | 3631, 3691 |
| PciI | ACATGT | 1 cut(s) | 1396 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 2814 |
| PctI | GAATGC | 2 cut(s) | 3426, 3538 |
| PdmI | GAANNNNTTC | 3 cut(s) | 1477, 2373, 3211 |
| PflFI | GACNNNGTC | 1 cut(s) | 1492 |
| PfoI | TCCNGGA | 1 cut(s) | 1914 |
| PkrI | GCNGC | 7 cut(s) | 6, 1099, 1450, 1506, 1578, 2740, 3331 |
| PleI | GAGTC | 9 cut(s) | 341, 648, 942, 1193, 1501, 1528, 1556, 1942, 3444 |
| PpsI | GAGTC | 9 cut(s) | 341, 648, 942, 1193, 1501, 1528, 1556, 1942, 3444 |
| PpuMI | RGGWCCY | 4 cut(s) | 1997, 2939, 3144, 3611 |
| PscI | ACATGT | 1 cut(s) | 1396 |
| PshAI | GACNNNNGTC | 1 cut(s) | 3408 |
| PsiI | TTATAA | 4 cut(s) | 2468, 2754, 2832, 3639 |
| Psp124BI | GAGCTC | 2 cut(s) | 1926, 2189 |
| Psp5II | RGGWCCY | 4 cut(s) | 1997, 2939, 3144, 3611 |
| Psp6I | CCWGG | 6 cut(s) | 44, 256, 1620, 1914, 3268, 3781 |
| PspGI | CCWGG | 6 cut(s) | 44, 256, 1620, 1914, 3268, 3781 |
| PspPPI | RGGWCCY | 4 cut(s) | 1997, 2939, 3144, 3611 |
| PspXI | VCTCGAGB | 1 cut(s) | 2595 |
| PstI | CTGCAG | 2 cut(s) | 1453, 2326 |
| PstNI | CAGNNNCTG | 1 cut(s) | 836 |
| PsuI | RGATCY | 6 cut(s) | 1313, 2107, 3073, 3245, 3317, 3484 |
| PsyI | GACNNNGTC | 1 cut(s) | 1492 |
| RsaI | GTAC | 7 cut(s) | 165, 568, 1795, 2645, 2768, 3091, 3622 |
| RsaNI | GTAC | 7 cut(s) | 164, 567, 1794, 2644, 2767, 3090, 3621 |
| RseI | CAYNNNNRTG | 2 cut(s) | 213, 2787 |
| SacI | GAGCTC | 2 cut(s) | 1926, 2189 |
| SalI | GTCGAC | 2 cut(s) | 196, 1495 |
| SatI | GCNGC | 7 cut(s) | 5, 1098, 1449, 1505, 1577, 2739, 3330 |
| SchI | GAGTC | 9 cut(s) | 342, 649, 943, 1194, 1502, 1528, 1556, 1943, 3445 |
| ScrFI | CCNGG | 6 cut(s) | 46, 258, 1622, 1916, 3270, 3783 |
| SduI | GDGCHC | 4 cut(s) | 754, 1926, 2189, 2338 |
| SfaNI | GCATC | 8 cut(s) | 232, 537, 790, 814, 2266, 2981, 3316, 3341 |
| SfcI | CTRYAG | 6 cut(s) | 1449, 1824, 2304, 2322, 2629, 3069 |
| Sfr274I | CTCGAG | 2 cut(s) | 2595, 3489 |
| SlaI | CTCGAG | 2 cut(s) | 2595, 3489 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 213, 2787 |
| SmlI | CTYRAG | 4 cut(s) | 1337, 2595, 2914, 3489 |
| SmoI | CTYRAG | 4 cut(s) | 1337, 2595, 2914, 3489 |
| SpeI | ACTAGT | 1 cut(s) | 224 |
| SseBI | AGGCCT | 2 cut(s) | 3631, 3691 |
| SsiI | CCGC | 9 cut(s) | 5, 524, 2455, 2641, 2741, 3329, 3368, 3500, 3521 |
| SspI | AATATT | 2 cut(s) | 1222, 2116 |
| SstI | GAGCTC | 2 cut(s) | 1926, 2189 |
| StuI | AGGCCT | 2 cut(s) | 3631, 3691 |
| StyD4I | CCNGG | 6 cut(s) | 44, 256, 1620, 1914, 3268, 3781 |
| StyI | CCWWGG | 8 cut(s) | 310, 745, 1109, 2314, 3224, 3406, 3686, 3851 |
| TaiI | ACGT | 3 cut(s) | 598, 2615, 2686 |
| TaqI | TCGA | 8 cut(s) | 197, 1496, 2479, 2596, 2817, 3175, 3286, 3490 |
| TatI | WGTACW | 1 cut(s) | 163 |
| TauI | GCSGC | 2 cut(s) | 7, 3332 |
| TscAI | CASTG | 8 cut(s) | 712, 856, 1038, 1264, 1747, 2221, 2676, 3649 |
| TseFI | GTSAC | 5 cut(s) | 641, 935, 1531, 2218, 2299 |
| TseI | GCWGC | 5 cut(s) | 1097, 1448, 1504, 1576, 2738 |
| Tsp45I | GTSAC | 5 cut(s) | 641, 935, 1531, 2218, 2299 |
| TspGWI | ACGGA | 2 cut(s) | 28, 3608 |
| TspRI | CASTG | 8 cut(s) | 712, 856, 1038, 1264, 1747, 2221, 2676, 3649 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1492 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 2632 |
| XapI | RAATTY | 9 cut(s) | 234, 457, 679, 1298, 2553, 2665, 2674, 2974, 3829 |
| XceI | RCATGY | 4 cut(s) | 768, 872, 1400, 1651 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 801 |
| XhoI | CTCGAG | 2 cut(s) | 2595, 3489 |
| XmaJI | CCTAGG | 2 cut(s) | 1109, 3686 |
| XmiI | GTMKAC | 4 cut(s) | 197, 1364, 1496, 2908 |
| XmnI | GAANNNNTTC | 3 cut(s) | 1477, 2373, 3211 |
| Zsp2I | ATGCAT | 4 cut(s) | 510, 805, 2996, 3540 |