No description available
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G13590 AT5G13590 AT5G13590 AT5G13590 AT5G13590 AT5G13590 |
| fragaria_vesca | FvH4_7g20760 |
| malus_domestica | MD01G1117200.v1.1 MD07G1184600.v1.1 |
| prunus_persica | Prupe.2G224500_v2.0.a1 |
| pyrus_communis | pycom01g14480 pycom07g17670 |
| rosa_chinensis | RchiOBHm_Chr1g0365001 |
| rosa_laevigata | RLG00000027451 |
| rosa_multiflora | Rmu_sc0000418.1_g000009 Rmu_ssc0000112.1_g000020 |
| rosa_roxburghii | Rroxscaffold_1G00022860 Rroxscaffold_2G00110440 Rroxscaffold_4G00291580 Rroxscaffold_4G00292010 |
| rosa_rugosa | Rorug01G0318800 Rorug02G0315200 |
| rosa_samantha | Rh1AG327800 Rh1BG289100 Rh1CG305800 Rh1DG320600 |
| rosa_wichuraiana | Rw1G029060 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 4 cut(s) | 2462, 2757, 2835, 3642 |
| AarI | CACCTGC | 2 cut(s) | 59, 3515 |
| AasI | GACNNNNNNGTC | 2 cut(s) | 961, 1360 |
| AbsI | CCTCGAGG | 1 cut(s) | 2589 |
| Acc36I | ACCTGC | 2 cut(s) | 59, 3515 |
| AccI | GTMKAC | 4 cut(s) | 197, 1364, 1493, 2911 |
| AccII | CGCG | 1 cut(s) | 2712 |
| AccIII | TCCGGA | 1 cut(s) | 1411 |
| AciI | CCGC | 7 cut(s) | 5, 2449, 2710, 2712, 2744, 3371, 3503 |
| AcoI | YGGCCR | 1 cut(s) | 2863 |
| AcsI | RAATTY | 9 cut(s) | 234, 457, 679, 1298, 2547, 2665, 2677, 2977, 3832 |
| AcuI | CTGAAG | 6 cut(s) | 147, 360, 492, 1434, 2829, 2997 |
| AfaI | GTAC | 8 cut(s) | 165, 568, 1792, 2370, 2645, 2771, 3094, 3625 |
| AfeI | AGCGCT | 1 cut(s) | 2209 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 11, 45, 190, 652, 2029, 2939, 3330 |
| AflIII | ACRYGT | 1 cut(s) | 1396 |
| AhlI | ACTAGT | 1 cut(s) | 224 |
| AjiI | CACGTC | 1 cut(s) | 2687 |
| AjnI | CCWGG | 4 cut(s) | 44, 256, 1908, 3784 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 3202, 3234 |
| Alw21I | GWGCWC | 3 cut(s) | 754, 1920, 2183 |
| Ama87I | CYCGRG | 2 cut(s) | 2589, 3492 |
| Aor13HI | TCCGGA | 1 cut(s) | 1411 |
| Aor51HI | AGCGCT | 1 cut(s) | 2209 |
| AoxI | GGCC | 9 cut(s) | 616, 1121, 1621, 2863, 3533, 3632, 3685, 3692, 3782 |
| ApeKI | GCWGC | 4 cut(s) | 1097, 1501, 1573, 2741 |
| ApoI | RAATTY | 9 cut(s) | 234, 457, 679, 1298, 2547, 2665, 2677, 2977, 3832 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 2881, 3214 |
| AspA2I | CCTAGG | 2 cut(s) | 1109, 3689 |
| AspLEI | GCGC | 1 cut(s) | 2210 |
| AsuHPI | GGTGA | 8 cut(s) | 108, 635, 2423, 2612, 3014, 3614, 3668, 3728 |
| AvaI | CYCGRG | 2 cut(s) | 2589, 3492 |
| AvrII | CCTAGG | 2 cut(s) | 1109, 3689 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1890, 1923 |
| BanII | GRGCYC | 2 cut(s) | 1920, 2183 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 3085, 3117 |
| BauI | CACGAG | 1 cut(s) | 1719 |
| Bbv12I | GWGCWC | 3 cut(s) | 754, 1920, 2183 |
| BbvCI | CCTCAGC | 1 cut(s) | 561 |
| BbvI | GCAGC | 4 cut(s) | 1084, 1513, 1560, 2753 |
| BceAI | ACGGC | 1 cut(s) | 2850 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 3530, 3564 |
| BciT130I | CCWGG | 4 cut(s) | 46, 258, 1910, 3786 |
| BciVI | GTATCC | 4 cut(s) | 1891, 2329, 2422, 3388 |
| BclI | TGATCA | 2 cut(s) | 1702, 2233 |
| BcuI | ACTAGT | 1 cut(s) | 224 |
| BfmI | CTRYAG | 5 cut(s) | 1821, 2298, 2316, 2623, 3072 |
| BfoI | RGCGCY | 1 cut(s) | 2211 |
| BfuAI | ACCTGC | 2 cut(s) | 59, 3515 |
| BfuI | GTATCC | 4 cut(s) | 1891, 2329, 2422, 3388 |
| BglII | AGATCT | 1 cut(s) | 2101 |
| BisI | GCNGC | 5 cut(s) | 5, 1098, 1502, 1574, 2742 |
| BlnI | CCTAGG | 2 cut(s) | 1109, 3689 |
| BlsI | GCNGC | 5 cut(s) | 6, 1099, 1503, 1575, 2743 |
| Bme1390I | CCNGG | 4 cut(s) | 46, 258, 1910, 3786 |
| BmeT110I | CYCGRG | 2 cut(s) | 2589, 3492 |
| BmgBI | CACGTC | 1 cut(s) | 2687 |
| BmrFI | CCNGG | 4 cut(s) | 46, 258, 1910, 3786 |
| BmrI | ACTGGG | 4 cut(s) | 36, 787, 1194, 1506 |
| BmsI | GCATC | 6 cut(s) | 537, 790, 814, 2165, 2260, 2984 |
| BmuI | ACTGGG | 4 cut(s) | 36, 787, 1194, 1506 |
| BoxI | GACNNNNGTC | 1 cut(s) | 3411 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 2267, 2299, 2914, 2946 |
| Bpu10I | CCTNAGC | 2 cut(s) | 561, 2331 |
| BpuEI | CTTGAG | 2 cut(s) | 1358, 2902 |
| BsaBI | GATNNNNATC | 3 cut(s) | 1812, 2100, 2503 |
| BsaI | GGTCTC | 5 cut(s) | 100, 457, 2493, 2934, 3399 |
| BsaWI | WCCGGW | 3 cut(s) | 1411, 3344, 3699 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 11, 45, 190, 652, 2029, 2939, 3330 |
| Bse1I | ACTGG | 7 cut(s) | 31, 782, 1200, 1392, 1501, 1737, 2433 |
| Bse3DI | GCAATG | 2 cut(s) | 1065, 1603 |
| Bse8I | GATNNNNATC | 3 cut(s) | 1812, 2100, 2503 |
| BseAI | TCCGGA | 1 cut(s) | 1411 |
| BseBI | CCWGG | 4 cut(s) | 46, 258, 1910, 3786 |
| BseJI | GATNNNNATC | 3 cut(s) | 1812, 2100, 2503 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 11, 45, 190, 652, 2029, 2939, 3330 |
| BseMI | GCAATG | 2 cut(s) | 1065, 1603 |
| BseNI | ACTGG | 7 cut(s) | 31, 782, 1200, 1392, 1501, 1737, 2433 |
| BseRI | GAGGAG | 2 cut(s) | 1267, 3604 |
| BseXI | GCAGC | 4 cut(s) | 1084, 1513, 1560, 2753 |
| BsgI | GTGCAG | 1 cut(s) | 408 |
| Bsh1236I | CGCG | 1 cut(s) | 2712 |
| BshFI | GGCC | 9 cut(s) | 618, 1123, 1623, 2865, 3535, 3634, 3687, 3694, 3784 |
| BsiHKAI | GWGCWC | 3 cut(s) | 754, 1920, 2183 |
| BsiHKCI | CYCGRG | 2 cut(s) | 2589, 3492 |
| BsiSI | CCGG | 4 cut(s) | 1412, 2455, 3345, 3700 |
| BslFI | GGGAC | 6 cut(s) | 879, 1224, 2004, 2955, 3346, 3627 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 11, 45, 190, 652, 2029, 2939, 3330 |
| BsmBI | CGTCTC | 3 cut(s) | 1346, 2917, 3601 |
| BsmFI | GGGAC | 6 cut(s) | 879, 1224, 2004, 2955, 3346, 3627 |
| BsmI | GAATGC | 2 cut(s) | 3429, 3541 |
| BsnI | GGCC | 9 cut(s) | 618, 1123, 1623, 2865, 3535, 3634, 3687, 3694, 3784 |
| Bso31I | GGTCTC | 5 cut(s) | 100, 457, 2493, 2934, 3399 |
| BsoBI | CYCGRG | 2 cut(s) | 2589, 3492 |
| Bsp1286I | GDGCHC | 3 cut(s) | 754, 1920, 2183 |
| Bsp13I | TCCGGA | 1 cut(s) | 1411 |
| Bsp19I | CCATGG | 4 cut(s) | 745, 3227, 3409, 3854 |
| BspACI | CCGC | 7 cut(s) | 5, 2449, 2710, 2712, 2744, 3371, 3503 |
| BspANI | GGCC | 9 cut(s) | 618, 1123, 1623, 2865, 3535, 3634, 3687, 3694, 3784 |
| BspEI | TCCGGA | 1 cut(s) | 1411 |
| BspFNI | CGCG | 1 cut(s) | 2712 |
| BspMAI | CTGCAG | 1 cut(s) | 2320 |
| BspMI | ACCTGC | 2 cut(s) | 59, 3515 |
| BspTNI | GGTCTC | 5 cut(s) | 100, 457, 2493, 2934, 3399 |
| BsrDI | GCAATG | 2 cut(s) | 1065, 1603 |
| BsrI | ACTGG | 7 cut(s) | 31, 782, 1200, 1392, 1501, 1737, 2433 |
| BssNAI | GTATAC | 1 cut(s) | 2912 |
| BssSI | CACGAG | 1 cut(s) | 1719 |
| BssT1I | CCWWGG | 7 cut(s) | 745, 1109, 2308, 3227, 3409, 3689, 3854 |
| Bst1107I | GTATAC | 1 cut(s) | 2912 |
| Bst2BI | CACGAG | 1 cut(s) | 1719 |
| Bst2UI | CCWGG | 4 cut(s) | 46, 258, 1910, 3786 |
| Bst4CI | ACNGT | 9 cut(s) | 328, 1159, 1261, 1528, 2774, 2909, 2928, 3400, 3647 |
| Bst6I | CTCTTC | 7 cut(s) | 15, 268, 537, 1008, 2240, 2536, 3887 |
| BstC8I | GCNNGC | 5 cut(s) | 552, 762, 980, 2147, 3782 |
| BstDSI | CCRYGG | 7 cut(s) | 745, 1617, 2710, 2866, 3227, 3409, 3854 |
| BstFNI | CGCG | 1 cut(s) | 2712 |
| BstH2I | RGCGCY | 1 cut(s) | 2211 |
| BstHHI | GCGC | 1 cut(s) | 2210 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 218, 770, 988, 2187 |
| BstNI | CCWGG | 4 cut(s) | 46, 258, 1910, 3786 |
| BstNSI | RCATGY | 5 cut(s) | 212, 768, 872, 1400, 1648 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 3411 |
| BstSCI | CCNGG | 4 cut(s) | 44, 256, 1908, 3784 |
| BstSFI | CTRYAG | 5 cut(s) | 1821, 2298, 2316, 2623, 3072 |
| BstUI | CGCG | 1 cut(s) | 2712 |
| BstV1I | GCAGC | 4 cut(s) | 1084, 1513, 1560, 2753 |
| BstX2I | RGATCY | 6 cut(s) | 1313, 2101, 3076, 3248, 3320, 3487 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1207 |
| BstYI | RGATCY | 6 cut(s) | 1313, 2101, 3076, 3248, 3320, 3487 |
| BstZ17I | GTATAC | 1 cut(s) | 2912 |
| BsuI | GTATCC | 4 cut(s) | 1891, 2329, 2422, 3388 |
| BsuRI | GGCC | 9 cut(s) | 618, 1123, 1623, 2865, 3535, 3634, 3687, 3694, 3784 |
| BtgI | CCRYGG | 7 cut(s) | 745, 1617, 2710, 2866, 3227, 3409, 3854 |
| BtgZI | GCGATG | 1 cut(s) | 3858 |
| BtrI | CACGTC | 1 cut(s) | 2687 |
| BtsI | GCAGTG | 1 cut(s) | 1031 |
| BtsIMutI | CAGTG | 5 cut(s) | 712, 1031, 1257, 1744, 3652 |
| BveI | ACCTGC | 2 cut(s) | 59, 3515 |
| Cac8I | GCNNGC | 5 cut(s) | 552, 762, 980, 2147, 3782 |
| CfoI | GCGC | 1 cut(s) | 2210 |
| Cfr42I | CCGCGG | 1 cut(s) | 2713 |
| CseI | GACGC | 1 cut(s) | 2819 |
| Csp6I | GTAC | 8 cut(s) | 164, 567, 1791, 2369, 2644, 2770, 3093, 3624 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1920, 1955 |
| CviQI | GTAC | 8 cut(s) | 164, 567, 1791, 2369, 2644, 2770, 3093, 3624 |
| DraI | TTTAAA | 1 cut(s) | 2481 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 961, 1360 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 961, 1360 |
| EaeI | YGGCCR | 1 cut(s) | 2863 |
| Eam1104I | CTCTTC | 7 cut(s) | 15, 268, 537, 1008, 2240, 2536, 3887 |
| EarI | CTCTTC | 7 cut(s) | 15, 268, 537, 1008, 2240, 2536, 3887 |
| EciI | GGCGGA | 2 cut(s) | 3360, 3518 |
| Ecl136II | GAGCTC | 2 cut(s) | 1918, 2181 |
| Eco130I | CCWWGG | 7 cut(s) | 745, 1109, 2308, 3227, 3409, 3689, 3854 |
| Eco147I | AGGCCT | 2 cut(s) | 3634, 3694 |
| Eco24I | GRGCYC | 2 cut(s) | 1920, 2183 |
| Eco31I | GGTCTC | 5 cut(s) | 100, 457, 2493, 2934, 3399 |
| Eco32I | GATATC | 2 cut(s) | 1458, 3880 |
| Eco47III | AGCGCT | 1 cut(s) | 2209 |
| Eco53kI | GAGCTC | 2 cut(s) | 1918, 2181 |
| Eco57I | CTGAAG | 6 cut(s) | 147, 360, 492, 1434, 2829, 2997 |
| Eco88I | CYCGRG | 2 cut(s) | 2589, 3492 |
| EcoICRI | GAGCTC | 2 cut(s) | 1918, 2181 |
| EcoO109I | RGGNCCY | 5 cut(s) | 1991, 2942, 3147, 3533, 3614 |
| EcoRI | GAATTC | 1 cut(s) | 2665 |
| EcoRII | CCWGG | 4 cut(s) | 44, 256, 1908, 3784 |
| EcoRV | GATATC | 2 cut(s) | 1458, 3880 |
| EcoT14I | CCWWGG | 7 cut(s) | 745, 1109, 2308, 3227, 3409, 3689, 3854 |
| EcoT22I | ATGCAT | 4 cut(s) | 510, 805, 2999, 3543 |
| EcoT38I | GRGCYC | 2 cut(s) | 1920, 2183 |
| ErhI | CCWWGG | 7 cut(s) | 745, 1109, 2308, 3227, 3409, 3689, 3854 |
| Esp3I | CGTCTC | 3 cut(s) | 1346, 2917, 3601 |
| FaqI | GGGAC | 6 cut(s) | 879, 1224, 2004, 2955, 3346, 3627 |
| FauI | CCCGC | 1 cut(s) | 2705 |
| FauNDI | CATATG | 1 cut(s) | 3106 |
| FbaI | TGATCA | 2 cut(s) | 1702, 2233 |
| FblI | GTMKAC | 4 cut(s) | 197, 1364, 1493, 2911 |
| Fnu4HI | GCNGC | 5 cut(s) | 5, 1098, 1502, 1574, 2742 |
| FriOI | GRGCYC | 2 cut(s) | 1920, 2183 |
| Fsp4HI | GCNGC | 5 cut(s) | 5, 1098, 1502, 1574, 2742 |
| GlaI | GCGC | 1 cut(s) | 2209 |
| GluI | GCNGC | 5 cut(s) | 5, 1098, 1502, 1574, 2742 |
| HaeII | RGCGCY | 1 cut(s) | 2211 |
| HaeIII | GGCC | 9 cut(s) | 618, 1123, 1623, 2865, 3535, 3634, 3687, 3694, 3784 |
| HapII | CCGG | 4 cut(s) | 1412, 2455, 3345, 3700 |
| HgaI | GACGC | 1 cut(s) | 2819 |
| HhaI | GCGC | 1 cut(s) | 2210 |
| Hin6I | GCGC | 1 cut(s) | 2208 |
| HinP1I | GCGC | 1 cut(s) | 2208 |
| HincII | GTYRAC | 6 cut(s) | 198, 1365, 1494, 1524, 2614, 3673 |
| HindII | GTYRAC | 6 cut(s) | 198, 1365, 1494, 1524, 2614, 3673 |
| HindIII | AAGCTT | 3 cut(s) | 1584, 2879, 3044 |
| HpaI | GTTAAC | 1 cut(s) | 3673 |
| HpaII | CCGG | 4 cut(s) | 1412, 2455, 3345, 3700 |
| HphI | GGTGA | 8 cut(s) | 108, 635, 2423, 2612, 3014, 3614, 3668, 3728 |
| Hpy166II | GTNNAC | 9 cut(s) | 198, 1273, 1365, 1494, 1524, 1639, 2614, 2912, 3673 |
| Hpy8I | GTNNAC | 9 cut(s) | 198, 1273, 1365, 1494, 1524, 1639, 2614, 2912, 3673 |
| HpyCH4III | ACNGT | 9 cut(s) | 328, 1159, 1261, 1528, 2774, 2909, 2928, 3400, 3647 |
| HpyCH4IV | ACGT | 3 cut(s) | 595, 2606, 2686 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 218, 770, 988, 2187 |
| HpySE526I | ACGT | 3 cut(s) | 595, 2606, 2686 |
| HspAI | GCGC | 1 cut(s) | 2208 |
| Kpn2I | TCCGGA | 1 cut(s) | 1411 |
| Ksp22I | TGATCA | 2 cut(s) | 1702, 2233 |
| KspAI | GTTAAC | 1 cut(s) | 3673 |
| KspI | CCGCGG | 1 cut(s) | 2713 |
| LmnI | GCTCC | 7 cut(s) | 259, 481, 1265, 2287, 2451, 2746, 3840 |
| Lsp1109I | GCAGC | 4 cut(s) | 1084, 1513, 1560, 2753 |
| LweI | GCATC | 6 cut(s) | 537, 790, 814, 2165, 2260, 2984 |
| MaeII | ACGT | 3 cut(s) | 595, 2606, 2686 |
| MaeIII | GTNAC | 9 cut(s) | 40, 641, 935, 1528, 2069, 2212, 2293, 2560, 2732 |
| MfeI | CAATTG | 1 cut(s) | 882 |
| MflI | RGATCY | 6 cut(s) | 1313, 2101, 3076, 3248, 3320, 3487 |
| MhlI | GDGCHC | 3 cut(s) | 754, 1920, 2183 |
| MlyI | GAGTC | 9 cut(s) | 342, 649, 943, 1194, 1499, 1525, 1553, 1937, 3448 |
| MmeI | TCCRAC | 3 cut(s) | 269, 1243, 1408 |
| Mph1103I | ATGCAT | 4 cut(s) | 510, 805, 2999, 3543 |
| MroI | TCCGGA | 1 cut(s) | 1411 |
| MroXI | GAANNNNTTC | 2 cut(s) | 2881, 3214 |
| MslI | CAYNNNNRTG | 2 cut(s) | 213, 2790 |
| MspA1I | CMGCKG | 3 cut(s) | 2449, 2712, 2744 |
| MspI | CCGG | 4 cut(s) | 1412, 2455, 3345, 3700 |
| MspR9I | CCNGG | 4 cut(s) | 46, 258, 1910, 3786 |
| MunI | CAATTG | 1 cut(s) | 882 |
| Mva1269I | GAATGC | 2 cut(s) | 3429, 3541 |
| MvaI | CCWGG | 4 cut(s) | 46, 258, 1910, 3786 |
| MvnI | CGCG | 1 cut(s) | 2712 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 218, 770, 988, 2187 |
| NcoI | CCATGG | 4 cut(s) | 745, 3227, 3409, 3854 |
| NdeI | CATATG | 1 cut(s) | 3106 |
| NmuCI | GTSAC | 5 cut(s) | 641, 935, 1528, 2212, 2293 |
| NsiI | ATGCAT | 4 cut(s) | 510, 805, 2999, 3543 |
| NspI | RCATGY | 5 cut(s) | 212, 768, 872, 1400, 1648 |
| PaeR7I | CTCGAG | 2 cut(s) | 2589, 3492 |
| PaqCI | CACCTGC | 2 cut(s) | 59, 3515 |
| PceI | AGGCCT | 2 cut(s) | 3634, 3694 |
| PciI | ACATGT | 1 cut(s) | 1396 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 1361, 1872, 2817 |
| PctI | GAATGC | 2 cut(s) | 3429, 3541 |
| PdmI | GAANNNNTTC | 2 cut(s) | 2881, 3214 |
| PflFI | GACNNNGTC | 1 cut(s) | 1489 |
| PfoI | TCCNGGA | 1 cut(s) | 1908 |
| PkrI | GCNGC | 5 cut(s) | 6, 1099, 1503, 1575, 2743 |
| PleI | GAGTC | 9 cut(s) | 341, 648, 942, 1193, 1498, 1525, 1553, 1936, 3447 |
| PpsI | GAGTC | 9 cut(s) | 341, 648, 942, 1193, 1498, 1525, 1553, 1936, 3447 |
| PpuMI | RGGWCCY | 4 cut(s) | 1991, 2942, 3147, 3614 |
| PscI | ACATGT | 1 cut(s) | 1396 |
| PshAI | GACNNNNGTC | 1 cut(s) | 3411 |
| PsiI | TTATAA | 4 cut(s) | 2462, 2757, 2835, 3642 |
| Psp124BI | GAGCTC | 2 cut(s) | 1920, 2183 |
| Psp5II | RGGWCCY | 4 cut(s) | 1991, 2942, 3147, 3614 |
| Psp6I | CCWGG | 4 cut(s) | 44, 256, 1908, 3784 |
| PspGI | CCWGG | 4 cut(s) | 44, 256, 1908, 3784 |
| PspPPI | RGGWCCY | 4 cut(s) | 1991, 2942, 3147, 3614 |
| PspXI | VCTCGAGB | 1 cut(s) | 2589 |
| PstI | CTGCAG | 1 cut(s) | 2320 |
| PsuI | RGATCY | 6 cut(s) | 1313, 2101, 3076, 3248, 3320, 3487 |
| PsyI | GACNNNGTC | 1 cut(s) | 1489 |
| RsaI | GTAC | 8 cut(s) | 165, 568, 1792, 2370, 2645, 2771, 3094, 3625 |
| RsaNI | GTAC | 8 cut(s) | 164, 567, 1791, 2369, 2644, 2770, 3093, 3624 |
| RseI | CAYNNNNRTG | 2 cut(s) | 213, 2790 |
| SacI | GAGCTC | 2 cut(s) | 1920, 2183 |
| SacII | CCGCGG | 1 cut(s) | 2713 |
| SalI | GTCGAC | 3 cut(s) | 196, 1363, 1492 |
| SatI | GCNGC | 5 cut(s) | 5, 1098, 1502, 1574, 2742 |
| SchI | GAGTC | 9 cut(s) | 342, 649, 943, 1194, 1499, 1525, 1553, 1937, 3448 |
| ScrFI | CCNGG | 4 cut(s) | 46, 258, 1910, 3786 |
| SduI | GDGCHC | 3 cut(s) | 754, 1920, 2183 |
| SfaNI | GCATC | 6 cut(s) | 537, 790, 814, 2165, 2260, 2984 |
| SfcI | CTRYAG | 5 cut(s) | 1821, 2298, 2316, 2623, 3072 |
| Sfr274I | CTCGAG | 2 cut(s) | 2589, 3492 |
| Sfr303I | CCGCGG | 1 cut(s) | 2713 |
| SgrBI | CCGCGG | 1 cut(s) | 2713 |
| SlaI | CTCGAG | 2 cut(s) | 2589, 3492 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 213, 2790 |
| SmlI | CTYRAG | 4 cut(s) | 1337, 2589, 2917, 3492 |
| SmoI | CTYRAG | 4 cut(s) | 1337, 2589, 2917, 3492 |
| SpeI | ACTAGT | 1 cut(s) | 224 |
| SseBI | AGGCCT | 2 cut(s) | 3634, 3694 |
| SsiI | CCGC | 7 cut(s) | 5, 2449, 2710, 2712, 2744, 3371, 3503 |
| SspI | AATATT | 2 cut(s) | 1222, 2110 |
| SstI | GAGCTC | 2 cut(s) | 1920, 2183 |
| StuI | AGGCCT | 2 cut(s) | 3634, 3694 |
| StyD4I | CCNGG | 4 cut(s) | 44, 256, 1908, 3784 |
| StyI | CCWWGG | 7 cut(s) | 745, 1109, 2308, 3227, 3409, 3689, 3854 |
| TaaI | ACNGT | 9 cut(s) | 328, 1159, 1261, 1528, 2774, 2909, 2928, 3400, 3647 |
| TaiI | ACGT | 3 cut(s) | 598, 2609, 2689 |
| TaqII | GACCGA | 1 cut(s) | 2643 |
| TatI | WGTACW | 2 cut(s) | 163, 2368 |
| TauI | GCSGC | 1 cut(s) | 7 |
| TscAI | CASTG | 5 cut(s) | 712, 1038, 1264, 1744, 3652 |
| TseFI | GTSAC | 5 cut(s) | 641, 935, 1528, 2212, 2293 |
| TseI | GCWGC | 4 cut(s) | 1097, 1501, 1573, 2741 |
| Tsp45I | GTSAC | 5 cut(s) | 641, 935, 1528, 2212, 2293 |
| TspGWI | ACGGA | 3 cut(s) | 744, 1606, 3611 |
| TspRI | CASTG | 5 cut(s) | 712, 1038, 1264, 1744, 3652 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1489 |
| XapI | RAATTY | 9 cut(s) | 234, 457, 679, 1298, 2547, 2665, 2677, 2977, 3832 |
| XbaI | TCTAGA | 1 cut(s) | 2669 |
| XceI | RCATGY | 5 cut(s) | 212, 768, 872, 1400, 1648 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 801 |
| XhoI | CTCGAG | 2 cut(s) | 2589, 3492 |
| XmaJI | CCTAGG | 2 cut(s) | 1109, 3689 |
| XmiI | GTMKAC | 4 cut(s) | 197, 1364, 1493, 2911 |
| XmnI | GAANNNNTTC | 2 cut(s) | 2881, 3214 |
| Zsp2I | ATGCAT | 4 cut(s) | 510, 805, 2999, 3543 |