Rroxscaffold_1G00022860

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0006019
Physical Location & Seq
Reverse (-)
28256569 .. 28260512
3944 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00022860.1

Sequence Viewer

Length: 375 bp
ATGGCCTCACTGCTATTGCTGCCAATTGTTGAGATATCTCGCCCTACAGGAAAGCCTTCTTGTTTGACAAAGTTGACTGGGCAGCCTTCTTGTTCAATAGAGTTGACTGTGACTCAGGATGTGATAAACCATTCAGGATACTCTAATGGAAAGCTGCCTCACAAAGCTTGTCAAAGGAATGAGAAAGTTGTTATATCCCTGGGCCATGATAGTAAGCCAAGGCTATACAGTAGCTACAAGTGCCAGAACAAGAAATTTCAGAATGAGGGAGAAAGGTTGCATACTGGTAATGCTTTCTTATTTGGTCTGATACTTTCTTATATGTTTGTTTCTGTTTCATGTAGAGATCCATATAAAAAAAAACTAAAGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

124

Amino Acids

13.87

Weight (kDa)

9.59

Isoelectric Point (pI)

38.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 341
AcsI RAATTY 1 cut(s) 254
AgsI TTSAA 1 cut(s) 96
AjnI CCWGG 1 cut(s) 198
AluBI AGCT 3 cut(s) 154, 167, 234
AluI AGCT 3 cut(s) 154, 167, 234
AlwI GGATC 1 cut(s) 341
AoxI GGCC 2 cut(s) 3, 202
ApeKI GCWGC 3 cut(s) 19, 82, 154
ApoI RAATTY 1 cut(s) 254
Asp700I GAANNNNTTC 1 cut(s) 55
AspS9I GGNCC 1 cut(s) 202
BbvI GCAGC 3 cut(s) 6, 94, 141
BciT130I CCWGG 1 cut(s) 200
BciVI GTATCC 1 cut(s) 131
BfmI CTRYAG 1 cut(s) 45
BfuI GTATCC 1 cut(s) 131
BisI GCNGC 3 cut(s) 20, 83, 155
BlsI GCNGC 3 cut(s) 21, 84, 156
Bme1390I CCNGG 1 cut(s) 200
BmgT120I GGNCC 1 cut(s) 202
BmrFI CCNGG 1 cut(s) 200
BmrI ACTGGG 1 cut(s) 87
BmuI ACTGGG 1 cut(s) 87
BsaJI CCNNGG 3 cut(s) 198, 199, 218
Bse1I ACTGG 2 cut(s) 82, 289
BseBI CCWGG 1 cut(s) 200
BseDI CCNNGG 3 cut(s) 198, 199, 218
BseGI GGATG 1 cut(s) 124
BseMII CTCAG 1 cut(s) 128
BseNI ACTGG 2 cut(s) 82, 289
BseXI GCAGC 3 cut(s) 6, 94, 141
BshFI GGCC 2 cut(s) 5, 204
BsnI GGCC 2 cut(s) 5, 204
Bsp143I GATC 1 cut(s) 346
BspANI GGCC 2 cut(s) 5, 204
BspCNI CTCAG 1 cut(s) 127
BspPI GGATC 1 cut(s) 341
BsrI ACTGG 2 cut(s) 82, 289
BssECI CCNNGG 3 cut(s) 198, 199, 218
BssMI GATC 1 cut(s) 346
BssT1I CCWWGG 1 cut(s) 218
Bst2UI CCWGG 1 cut(s) 200
Bst4CI ACNGT 2 cut(s) 109, 230
BstDEI CTNAG 1 cut(s) 114
BstF5I GGATG 1 cut(s) 124
BstKTI GATC 1 cut(s) 349
BstMBI GATC 1 cut(s) 346
BstMWI GCNNNNNNNGC 2 cut(s) 19, 240
BstNI CCWGG 1 cut(s) 200
BstSCI CCNGG 1 cut(s) 198
BstSFI CTRYAG 1 cut(s) 45
BstV1I GCAGC 3 cut(s) 6, 94, 141
BstX2I RGATCY 1 cut(s) 346
BstYI RGATCY 1 cut(s) 346
BsuI GTATCC 1 cut(s) 131
BsuRI GGCC 2 cut(s) 5, 204
BtsCI GGATG 1 cut(s) 124
BtsI GCAGTG 1 cut(s) 8
BtsIMutI CAGTG 1 cut(s) 8
Cfr13I GGNCC 1 cut(s) 202
CviAII CATG 2 cut(s) 206, 339
CviJI RGCY 9 cut(s) 5, 55, 85, 154, 167, 204, 217, 223, 234
CviKI_1 RGCY 9 cut(s) 5, 55, 85, 154, 167, 204, 217, 223, 234
DdeI CTNAG 1 cut(s) 114
DpnI GATC 1 cut(s) 348
DpnII GATC 1 cut(s) 346
Eco130I CCWWGG 1 cut(s) 218
Eco32I GATATC 1 cut(s) 36
EcoRII CCWGG 1 cut(s) 198
EcoRV GATATC 1 cut(s) 36
EcoT14I CCWWGG 1 cut(s) 218
ErhI CCWWGG 1 cut(s) 218
FaeI CATG 2 cut(s) 209, 342
FaiI YATR 9 cut(s) 194, 207, 226, 282, 321, 323, 340, 352, 354
FatI CATG 2 cut(s) 205, 338
Fnu4HI GCNGC 3 cut(s) 20, 83, 155
FokI GGATG 1 cut(s) 131
Fsp4HI GCNGC 3 cut(s) 20, 83, 155
GluI GCNGC 3 cut(s) 20, 83, 155
HaeIII GGCC 2 cut(s) 5, 204
Hin1II CATG 2 cut(s) 209, 342
HincII GTYRAC 2 cut(s) 75, 105
HindII GTYRAC 2 cut(s) 75, 105
HindIII AAGCTT 1 cut(s) 165
HinfI GANTC 1 cut(s) 112
Hpy166II GTNNAC 2 cut(s) 75, 105
Hpy188I TCNGA 2 cut(s) 261, 309
Hpy188III TCNNGA 2 cut(s) 116, 135
Hpy8I GTNNAC 2 cut(s) 75, 105
HpyAV CCTTC 2 cut(s) 66, 96
HpyCH4III ACNGT 2 cut(s) 109, 230
HpyCH4V TGCA 1 cut(s) 280
HpyF10VI GCNNNNNNNGC 2 cut(s) 19, 240
HpyF3I CTNAG 1 cut(s) 114
Hsp92II CATG 2 cut(s) 209, 342
Kzo9I GATC 1 cut(s) 346
LpnPI CCDG 8 cut(s) 33, 63, 101, 120, 185, 212, 257, 270
Lsp1109I GCAGC 3 cut(s) 6, 94, 141
MaeIII GTNAC 1 cut(s) 109
MalI GATC 1 cut(s) 348
MboI GATC 1 cut(s) 346
MfeI CAATTG 1 cut(s) 24
MflI RGATCY 1 cut(s) 346
MluCI AATT 3 cut(s) 24, 254, 370
MlyI GAGTC 1 cut(s) 106
MnlI CCTC 3 cut(s) 16, 168, 259
MroXI GAANNNNTTC 1 cut(s) 55
MspR9I CCNGG 1 cut(s) 200
MunI CAATTG 1 cut(s) 24
MvaI CCWGG 1 cut(s) 200
MwoI GCNNNNNNNGC 2 cut(s) 19, 240
NdeII GATC 1 cut(s) 346
NlaIII CATG 2 cut(s) 209, 342
NmuCI GTSAC 1 cut(s) 109
PasI CCCWGGG 1 cut(s) 199
PdmI GAANNNNTTC 1 cut(s) 55
PkrI GCNGC 3 cut(s) 21, 84, 156
PleI GAGTC 1 cut(s) 106
PpsI GAGTC 1 cut(s) 106
Psp6I CCWGG 1 cut(s) 198
PspGI CCWGG 1 cut(s) 198
PspPI GGNCC 1 cut(s) 202
PsuI RGATCY 1 cut(s) 346
SatI GCNGC 3 cut(s) 20, 83, 155
Sau3AI GATC 1 cut(s) 346
Sau96I GGNCC 1 cut(s) 202
SchI GAGTC 1 cut(s) 106
ScrFI CCNGG 1 cut(s) 200
SetI ASST 4 cut(s) 156, 169, 236, 278
SfcI CTRYAG 1 cut(s) 45
Sse9I AATT 3 cut(s) 24, 254, 370
StyD4I CCNGG 1 cut(s) 198
StyI CCWWGG 1 cut(s) 218
TaaI ACNGT 2 cut(s) 109, 230
TasI AATT 3 cut(s) 24, 254, 370
TscAI CASTG 1 cut(s) 15
TseFI GTSAC 1 cut(s) 109
TseI GCWGC 3 cut(s) 19, 82, 154
Tsp45I GTSAC 1 cut(s) 109
TspDTI ATGAA 1 cut(s) 327
TspRI CASTG 1 cut(s) 15
XapI RAATTY 1 cut(s) 254
XmnI GAANNNNTTC 1 cut(s) 55
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.