Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 408 |
| AccI | GTMKAC | 1 cut(s) | 508 |
| AciI | CCGC | 2 cut(s) | 259, 366 |
| AclWI | GGATC | 2 cut(s) | 367, 509 |
| AcsI | RAATTY | 3 cut(s) | 455, 742, 1021 |
| AcuI | CTGAAG | 1 cut(s) | 1080 |
| AfaI | GTAC | 5 cut(s) | 164, 241, 343, 384, 434 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 81 |
| AgsI | TTSAA | 5 cut(s) | 248, 599, 643, 733, 1039 |
| AjnI | CCWGG | 1 cut(s) | 104 |
| AleI | CACNNNNGTG | 1 cut(s) | 935 |
| AluBI | AGCT | 4 cut(s) | 124, 428, 452, 709 |
| AluI | AGCT | 4 cut(s) | 124, 428, 452, 709 |
| Alw21I | GWGCWC | 1 cut(s) | 963 |
| Alw26I | GTCTC | 1 cut(s) | 79 |
| Alw44I | GTGCAC | 1 cut(s) | 959 |
| AlwI | GGATC | 2 cut(s) | 367, 509 |
| Ama87I | CYCGRG | 2 cut(s) | 55, 545 |
| AoxI | GGCC | 1 cut(s) | 72 |
| ApaLI | GTGCAC | 1 cut(s) | 959 |
| ApeKI | GCWGC | 2 cut(s) | 121, 271 |
| ApoI | RAATTY | 3 cut(s) | 455, 742, 1021 |
| AseI | ATTAAT | 1 cut(s) | 129 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 189 |
| AspS9I | GGNCC | 1 cut(s) | 72 |
| AsuHPI | GGTGA | 4 cut(s) | 382, 905, 908, 1001 |
| AvaI | CYCGRG | 2 cut(s) | 55, 545 |
| AxyI | CCTNAGG | 1 cut(s) | 312 |
| BaeGI | GKGCMC | 1 cut(s) | 963 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 325, 358 |
| BbsI | GAAGAC | 1 cut(s) | 612 |
| Bbv12I | GWGCWC | 1 cut(s) | 963 |
| BbvI | GCAGC | 2 cut(s) | 133, 258 |
| BccI | CCATC | 4 cut(s) | 61, 260, 475, 754 |
| BceAI | ACGGC | 1 cut(s) | 119 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 426, 460 |
| BciT130I | CCWGG | 1 cut(s) | 106 |
| BciVI | GTATCC | 1 cut(s) | 326 |
| BcoDI | GTCTC | 1 cut(s) | 79 |
| BfaI | CTAG | 2 cut(s) | 737, 998 |
| BfmI | CTRYAG | 1 cut(s) | 924 |
| BfuAI | ACCTGC | 1 cut(s) | 408 |
| BfuI | GTATCC | 1 cut(s) | 326 |
| BglII | AGATCT | 1 cut(s) | 41 |
| BisI | GCNGC | 2 cut(s) | 122, 272 |
| BlsI | GCNGC | 2 cut(s) | 123, 273 |
| Bme1390I | CCNGG | 1 cut(s) | 106 |
| BmeT110I | CYCGRG | 2 cut(s) | 55, 545 |
| BmgT120I | GGNCC | 1 cut(s) | 72 |
| BmiI | GGNNCC | 2 cut(s) | 73, 951 |
| BmrFI | CCNGG | 1 cut(s) | 106 |
| BmsI | GCATC | 2 cut(s) | 91, 622 |
| BpiI | GAAGAC | 1 cut(s) | 612 |
| BsaJI | CCNNGG | 1 cut(s) | 135 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 81 |
| Bse1I | ACTGG | 2 cut(s) | 483, 988 |
| Bse21I | CCTNAGG | 1 cut(s) | 312 |
| BseBI | CCWGG | 1 cut(s) | 106 |
| BseDI | CCNNGG | 1 cut(s) | 135 |
| BseGI | GGATG | 3 cut(s) | 479, 540, 637 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 81 |
| BseMII | CTCAG | 3 cut(s) | 303, 924, 988 |
| BseNI | ACTGG | 2 cut(s) | 483, 988 |
| BseSI | GKGCMC | 1 cut(s) | 963 |
| BseXI | GCAGC | 2 cut(s) | 133, 258 |
| BshFI | GGCC | 1 cut(s) | 74 |
| BsiHKAI | GWGCWC | 1 cut(s) | 963 |
| BsiHKCI | CYCGRG | 2 cut(s) | 55, 545 |
| BslFI | GGGAC | 1 cut(s) | 304 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 81 |
| BsmAI | GTCTC | 1 cut(s) | 79 |
| BsmFI | GGGAC | 1 cut(s) | 304 |
| BsmI | GAATGC | 1 cut(s) | 703 |
| BsnI | GGCC | 1 cut(s) | 74 |
| BsoBI | CYCGRG | 2 cut(s) | 55, 545 |
| Bsp1286I | GDGCHC | 1 cut(s) | 963 |
| Bsp143I | GATC | 3 cut(s) | 41, 372, 514 |
| BspACI | CCGC | 2 cut(s) | 259, 366 |
| BspANI | GGCC | 1 cut(s) | 74 |
| BspCNI | CTCAG | 3 cut(s) | 304, 925, 987 |
| BspHI | TCATGA | 1 cut(s) | 816 |
| BspLI | GGNNCC | 2 cut(s) | 73, 951 |
| BspMI | ACCTGC | 1 cut(s) | 408 |
| BspPI | GGATC | 2 cut(s) | 367, 509 |
| BsrI | ACTGG | 2 cut(s) | 483, 988 |
| BssECI | CCNNGG | 1 cut(s) | 135 |
| BssMI | GATC | 3 cut(s) | 41, 372, 514 |
| BssNAI | GTATAC | 1 cut(s) | 509 |
| Bst1107I | GTATAC | 1 cut(s) | 509 |
| Bst2UI | CCWGG | 1 cut(s) | 106 |
| Bst4CI | ACNGT | 4 cut(s) | 146, 209, 506, 594 |
| BstC8I | GCNNGC | 2 cut(s) | 30, 588 |
| BstDEI | CTNAG | 5 cut(s) | 38, 196, 312, 933, 974 |
| BstDSI | CCRYGG | 1 cut(s) | 135 |
| BstEII | GGTNACC | 2 cut(s) | 395, 914 |
| BstF5I | GGATG | 3 cut(s) | 479, 540, 637 |
| BstKTI | GATC | 3 cut(s) | 44, 375, 517 |
| BstMAI | GTCTC | 1 cut(s) | 79 |
| BstMBI | GATC | 3 cut(s) | 41, 372, 514 |
| BstNI | CCWGG | 1 cut(s) | 106 |
| BstPI | GGTNACC | 2 cut(s) | 395, 914 |
| BstSCI | CCNGG | 1 cut(s) | 104 |
| BstSFI | CTRYAG | 1 cut(s) | 924 |
| BstSLI | GKGCMC | 1 cut(s) | 963 |
| BstV1I | GCAGC | 2 cut(s) | 133, 258 |
| BstV2I | GAAGAC | 1 cut(s) | 612 |
| BstX2I | RGATCY | 1 cut(s) | 41 |
| BstYI | RGATCY | 1 cut(s) | 41 |
| BstZ17I | GTATAC | 1 cut(s) | 509 |
| Bsu36I | CCTNAGG | 1 cut(s) | 312 |
| BsuI | GTATCC | 1 cut(s) | 326 |
| BsuRI | GGCC | 1 cut(s) | 74 |
| BtgI | CCRYGG | 1 cut(s) | 135 |
| BtsCI | GGATG | 3 cut(s) | 479, 540, 637 |
| BtsIMutI | CAGTG | 2 cut(s) | 490, 930 |
| BveI | ACCTGC | 1 cut(s) | 408 |
| Cac8I | GCNNGC | 2 cut(s) | 30, 588 |
| CciI | TCATGA | 1 cut(s) | 816 |
| Cfr13I | GGNCC | 1 cut(s) | 72 |
| Csp6I | GTAC | 5 cut(s) | 163, 240, 342, 383, 433 |
| CviAII | CATG | 6 cut(s) | 462, 471, 767, 817, 902, 964 |
| CviQI | GTAC | 5 cut(s) | 163, 240, 342, 383, 433 |
| DdeI | CTNAG | 5 cut(s) | 38, 196, 312, 933, 974 |
| DpnI | GATC | 3 cut(s) | 43, 374, 516 |
| DpnII | GATC | 3 cut(s) | 41, 372, 514 |
| DraI | TTTAAA | 1 cut(s) | 177 |
| Eco57I | CTGAAG | 1 cut(s) | 1080 |
| Eco81I | CCTNAGG | 1 cut(s) | 312 |
| Eco88I | CYCGRG | 2 cut(s) | 55, 545 |
| Eco91I | GGTNACC | 2 cut(s) | 395, 914 |
| EcoO65I | GGTNACC | 2 cut(s) | 395, 914 |
| EcoRII | CCWGG | 1 cut(s) | 104 |
| FaeI | CATG | 6 cut(s) | 465, 474, 770, 820, 905, 967 |
| FaqI | GGGAC | 1 cut(s) | 304 |
| FatI | CATG | 6 cut(s) | 461, 470, 766, 816, 901, 963 |
| FauI | CCCGC | 2 cut(s) | 252, 359 |
| FblI | GTMKAC | 1 cut(s) | 508 |
| Fnu4HI | GCNGC | 2 cut(s) | 122, 272 |
| FokI | GGATG | 3 cut(s) | 466, 547, 644 |
| Fsp4HI | GCNGC | 2 cut(s) | 122, 272 |
| FspBI | CTAG | 2 cut(s) | 737, 998 |
| GluI | GCNGC | 2 cut(s) | 122, 272 |
| HaeIII | GGCC | 1 cut(s) | 74 |
| Hin1II | CATG | 6 cut(s) | 465, 474, 770, 820, 905, 967 |
| HinfI | GANTC | 3 cut(s) | 200, 292, 1079 |
| HphI | GGTGA | 4 cut(s) | 382, 905, 908, 1001 |
| Hpy166II | GTNNAC | 4 cut(s) | 163, 509, 862, 961 |
| Hpy188I | TCNGA | 3 cut(s) | 226, 352, 1060 |
| Hpy188III | TCNNGA | 8 cut(s) | 55, 311, 545, 599, 620, 737, 817, 976 |
| Hpy8I | GTNNAC | 4 cut(s) | 163, 509, 862, 961 |
| HpyAV | CCTTC | 2 cut(s) | 900, 904 |
| HpyCH4III | ACNGT | 4 cut(s) | 146, 209, 506, 594 |
| HpyCH4V | TGCA | 6 cut(s) | 447, 488, 806, 839, 889, 961 |
| HpyF3I | CTNAG | 5 cut(s) | 38, 196, 312, 933, 974 |
| Hsp92II | CATG | 6 cut(s) | 465, 474, 770, 820, 905, 967 |
| Kzo9I | GATC | 3 cut(s) | 41, 372, 514 |
| LmnI | GCTCC | 2 cut(s) | 313, 955 |
| Lsp1109I | GCAGC | 2 cut(s) | 133, 258 |
| LweI | GCATC | 2 cut(s) | 91, 622 |
| MaeI | CTAG | 2 cut(s) | 737, 998 |
| MaeIII | GTNAC | 6 cut(s) | 3, 395, 664, 720, 914, 989 |
| MalI | GATC | 3 cut(s) | 43, 374, 516 |
| MboI | GATC | 3 cut(s) | 41, 372, 514 |
| MboII | GAAGA | 6 cut(s) | 182, 275, 614, 617, 1073, 1088 |
| MflI | RGATCY | 1 cut(s) | 41 |
| MhlI | GDGCHC | 1 cut(s) | 963 |
| MluCI | AATT | 5 cut(s) | 298, 455, 540, 742, 1021 |
| MlyI | GAGTC | 1 cut(s) | 286 |
| MroXI | GAANNNNTTC | 1 cut(s) | 189 |
| MseI | TTAA | 5 cut(s) | 129, 176, 216, 570, 855 |
| MslI | CAYNNNNRTG | 2 cut(s) | 10, 935 |
| MspR9I | CCNGG | 1 cut(s) | 106 |
| Mva1269I | GAATGC | 1 cut(s) | 703 |
| MvaI | CCWGG | 1 cut(s) | 106 |
| NdeII | GATC | 3 cut(s) | 41, 372, 514 |
| NlaIII | CATG | 6 cut(s) | 465, 474, 770, 820, 905, 967 |
| NlaIV | GGNNCC | 2 cut(s) | 73, 951 |
| NmuCI | GTSAC | 4 cut(s) | 3, 720, 914, 989 |
| OliI | CACNNNNGTG | 1 cut(s) | 935 |
| PaeR7I | CTCGAG | 1 cut(s) | 55 |
| PagI | TCATGA | 1 cut(s) | 816 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 781 |
| PctI | GAATGC | 1 cut(s) | 703 |
| PdmI | GAANNNNTTC | 1 cut(s) | 189 |
| PfeI | GAWTC | 2 cut(s) | 200, 1079 |
| PkrI | GCNGC | 2 cut(s) | 123, 273 |
| PleI | GAGTC | 1 cut(s) | 286 |
| PpsI | GAGTC | 1 cut(s) | 286 |
| PshBI | ATTAAT | 1 cut(s) | 129 |
| Psp6I | CCWGG | 1 cut(s) | 104 |
| PspEI | GGTNACC | 2 cut(s) | 395, 914 |
| PspGI | CCWGG | 1 cut(s) | 104 |
| PspN4I | GGNNCC | 2 cut(s) | 73, 951 |
| PspPI | GGNCC | 1 cut(s) | 72 |
| PsuI | RGATCY | 1 cut(s) | 41 |
| RsaI | GTAC | 5 cut(s) | 164, 241, 343, 384, 434 |
| RsaNI | GTAC | 5 cut(s) | 163, 240, 342, 383, 433 |
| RseI | CAYNNNNRTG | 2 cut(s) | 10, 935 |
| SaqAI | TTAA | 5 cut(s) | 129, 176, 216, 570, 855 |
| SatI | GCNGC | 2 cut(s) | 122, 272 |
| Sau3AI | GATC | 3 cut(s) | 41, 372, 514 |
| Sau96I | GGNCC | 1 cut(s) | 72 |
| SchI | GAGTC | 1 cut(s) | 286 |
| ScrFI | CCNGG | 1 cut(s) | 106 |
| SduI | GDGCHC | 1 cut(s) | 963 |
| SfaNI | GCATC | 2 cut(s) | 91, 622 |
| SfcI | CTRYAG | 1 cut(s) | 924 |
| Sfr274I | CTCGAG | 1 cut(s) | 55 |
| SlaI | CTCGAG | 1 cut(s) | 55 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 10, 935 |
| SmlI | CTYRAG | 1 cut(s) | 55 |
| SmoI | CTYRAG | 1 cut(s) | 55 |
| Sse9I | AATT | 5 cut(s) | 298, 455, 540, 742, 1021 |
| SsiI | CCGC | 2 cut(s) | 259, 366 |
| SspMI | CTAG | 2 cut(s) | 737, 998 |
| StyD4I | CCNGG | 1 cut(s) | 104 |
| TaaI | ACNGT | 4 cut(s) | 146, 209, 506, 594 |
| TaqI | TCGA | 4 cut(s) | 56, 154, 716, 942 |
| TasI | AATT | 5 cut(s) | 298, 455, 540, 742, 1021 |
| TatI | WGTACW | 2 cut(s) | 239, 382 |
| TfiI | GAWTC | 2 cut(s) | 200, 1079 |
| Tru1I | TTAA | 5 cut(s) | 129, 176, 216, 570, 855 |
| Tru9I | TTAA | 5 cut(s) | 129, 176, 216, 570, 855 |
| TscAI | CASTG | 2 cut(s) | 490, 937 |
| TseFI | GTSAC | 4 cut(s) | 3, 720, 914, 989 |
| TseI | GCWGC | 2 cut(s) | 121, 271 |
| Tsp45I | GTSAC | 4 cut(s) | 3, 720, 914, 989 |
| TspDTI | ATGAA | 9 cut(s) | 192, 266, 426, 450, 468, 576, 710, 825, 896 |
| TspGWI | ACGGA | 1 cut(s) | 946 |
| TspRI | CASTG | 2 cut(s) | 490, 937 |
| VneI | GTGCAC | 1 cut(s) | 959 |
| VspI | ATTAAT | 1 cut(s) | 129 |
| XapI | RAATTY | 3 cut(s) | 455, 742, 1021 |
| XbaI | TCTAGA | 1 cut(s) | 736 |
| XhoI | CTCGAG | 1 cut(s) | 55 |
| XmiI | GTMKAC | 1 cut(s) | 508 |
| XmnI | GAANNNNTTC | 1 cut(s) | 189 |
| XspI | CTAG | 2 cut(s) | 737, 998 |