Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0042820.1

Orthogroup ID

OG0000524

Physical Location & Seq

Genomic Coordinates Forward (+)

9316 .. 9627

Gene Structure 312 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0042820.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

atgtctgggcgtggcaagggaggcaagggattggggaagggaggagcgaaacgacaccgtaaggtcctccgcgacaacatccaggggatcaccaagccggccattcgtcgtttggctcgcagaggaggtgtgaagcgtatcagtggtttgatttatgaggagacacgaggtgtgctcaagatatttctcgagaatgtgatcagagacgccgtgacctacactgagcatgctcgccgcaagactgtgaccgccatggatgtggtctatgcgctcaagaggcagggcaggactctctatgggttcggtggctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000786 GO:0000788 GO:0000790 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006323 GO:0006325 GO:0006333 GO:0006334 GO:0006996 GO:0008150 GO:0009987 GO:0016043 GO:0022607 GO:0031497 GO:0031974 GO:0031981 GO:0032991 GO:0032993 GO:0034622 GO:0034728 GO:0042393 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044815 GO:0051276 GO:0065003 GO:0065004 GO:0070013 GO:0071103 GO:0071824 GO:0071840 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko05034 ko05203 ko05322 map05034 map05203 map05322

Pfam Domains

Protein Families

CENP-T_C

Protein Analysis

103

Amino Acids

11.41

Weight (kDa)

11.48

Isoelectric Point (pI)

45.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000524)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07660 AT1G07820 AT1G07820 AT2G28740 AT3G45930 AT3G46320 AT3G53730 AT5G59690 AT5G59970 AT5G59970
malus_domestica	MD03G1097000.v1.1 MD03G1105400.v1.1 MD04G1124800.v1.1 MD06G1122500.v1.1 MD07G1184400.v1.1 MD07G1194500.v1.1 MD11G1143500.v1.1 MD12G1139800.v1.1 MD14G1139400.v1.1 MD15G1139200.v1.1
rosa_chinensis	RchiOBHm_Chr1g0364991 RchiOBHm_Chr3g0467051 RchiOBHm_Chr5g0062221 RchiOBHm_Chr5g0063251 RchiOBHm_Chr5g0063281 RchiOBHm_Chr5g0063731 RchiOBHm_Chr7g0187711
rosa_laevigata	RLG00000024533
rosa_multiflora	Rmu_sc0004483.1_g000025 Rmu_sc0005045.1_g000017 Rmu_sc0005045.1_g000024 Rmu_sc0005638.1_g000003 Rmu_sc0042820.1_g000002 Rmu_sc0042820.1_g000003 Rmu_ssc0000112.1_g000021 Rmu_ssc0000309.1_g000047 Rmu_ssc0000409.1_g000022
rosa_roxburghii	Rroxscaffold_1G00017140 Rroxscaffold_1G00017150 Rroxscaffold_1G00017430 Rroxscaffold_1G00017460 Rroxscaffold_4G00292020 Rroxscaffold_6G00413990
rosa_rugosa	Rorug01G0318800 Rorug01G0329200 Rorug03G0085000 Rorug05G0347300 Rorug05G0355600 Rorug05G0355800 Rorug05G0358800 Rorug05G0358800 Rorug05G0358900 Rorug06G0483800
rosa_samantha	Rh1AG327700 Rh1BG289000 Rh1CG305700 Rh1DG320500 Rh3AG133000 Rh3BG154000 Rh3CG154000 Rh3DG155100 Rh5AG407800 Rh5AG417800 Rh5BG421500 Rh5BG430300 Rh5BG433000 Rh5BG433200 Rh5CG445700 Rh5CG456200 Rh5CG456400 Rh5DG436500 Rh5DG443700 Rh5DG443900 Rh5DG446400 Rh5DG446600 Rh7BG090600 Rh7CG089600 Rh7DG091100
rosa_wichuraiana	Rw1G029050 Rw3G012590 Rw5G038430 Rw5G039030 Rw5G039230 Rw5G039250 Rw7G007670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	72
AciI	CCGC	3 cut(s)	70, 235, 249
AclWI	GGATC	1 cut(s)	95
AcoI	YGGCCR	1 cut(s)	99
AcyI	GRCGYC	1 cut(s)	207
AdeI	CACNNNGTG	1 cut(s)	170
AjnI	CCWGG	1 cut(s)	81
Alw21I	GWGCWC	1 cut(s)	177
Alw26I	GTCTC	2 cut(s)	155, 198
AlwI	GGATC	1 cut(s)	95
Ama87I	CYCGRG	1 cut(s)	188
AoxI	GGCC	1 cut(s)	99
AspLEI	GCGC	1 cut(s)	271
AspS9I	GGNCC	1 cut(s)	64
AsuHPI	GGTGA	1 cut(s)	82
AvaI	CYCGRG	1 cut(s)	188
AvaII	GGWCC	1 cut(s)	64
BauI	CACGAG	1 cut(s)	165
Bbv12I	GWGCWC	1 cut(s)	177
BceAI	ACGGC	1 cut(s)	194
BciT130I	CCWGG	1 cut(s)	83
BclI	TGATCA	1 cut(s)	198
BcoDI	GTCTC	2 cut(s)	155, 198
BfaI	CTAG	1 cut(s)	310
BisI	GCNGC	1 cut(s)	235
BlsI	GCNGC	1 cut(s)	236
Bme1390I	CCNGG	1 cut(s)	83
Bme18I	GGWCC	1 cut(s)	64
BmeT110I	CYCGRG	1 cut(s)	188
BmgT120I	GGNCC	1 cut(s)	64
BmrFI	CCNGG	1 cut(s)	83
BplI	GAGNNNNNCTC	2 cut(s)	159, 191
BpuEI	CTTGAG	2 cut(s)	161, 257
BsaHI	GRCGYC	1 cut(s)	207
BsaJI	CCNNGG	2 cut(s)	82, 252
Bse118I	RCCGGY	1 cut(s)	97
BseBI	CCWGG	1 cut(s)	83
BseDI	CCNNGG	2 cut(s)	82, 252
BseGI	GGATG	2 cut(s)	78, 262
BseMII	CTCAG	1 cut(s)	213
BseRI	GAGGAG	3 cut(s)	57, 138, 173
Bsh1236I	CGCG	1 cut(s)	72
BshFI	GGCC	1 cut(s)	101
BsiHKAI	GWGCWC	1 cut(s)	177
BsiHKCI	CYCGRG	1 cut(s)	188
BsiSI	CCGG	1 cut(s)	98
BsmAI	GTCTC	2 cut(s)	155, 198
BsmBI	CGTCTC	1 cut(s)	198
BsnI	GGCC	1 cut(s)	101
BsoBI	CYCGRG	1 cut(s)	188
Bsp1286I	GDGCHC	1 cut(s)	177
Bsp143I	GATC	2 cut(s)	87, 198
Bsp19I	CCATGG	1 cut(s)	252
BspACI	CCGC	3 cut(s)	70, 235, 249
BspANI	GGCC	1 cut(s)	101
BspCNI	CTCAG	1 cut(s)	214
BspFNI	CGCG	1 cut(s)	72
BspPI	GGATC	1 cut(s)	95
BsrFI	RCCGGY	1 cut(s)	97
BssAI	RCCGGY	1 cut(s)	97
BssECI	CCNNGG	2 cut(s)	82, 252
BssMI	GATC	2 cut(s)	87, 198
BssNI	GRCGYC	1 cut(s)	207
BssSI	CACGAG	1 cut(s)	165
BssT1I	CCWWGG	1 cut(s)	252
Bst2BI	CACGAG	1 cut(s)	165
Bst2UI	CCWGG	1 cut(s)	83
Bst4CI	ACNGT	2 cut(s)	59, 244
BstACI	GRCGYC	1 cut(s)	207
BstC8I	GCNNGC	4 cut(s)	99, 118, 228, 232
BstDEI	CTNAG	1 cut(s)	222
BstDSI	CCRYGG	1 cut(s)	252
BstF5I	GGATG	2 cut(s)	78, 262
BstFNI	CGCG	1 cut(s)	72
BstHHI	GCGC	1 cut(s)	271
BstKTI	GATC	2 cut(s)	90, 201
BstMAI	GTCTC	2 cut(s)	155, 198
BstMBI	GATC	2 cut(s)	87, 198
BstMWI	GCNNNNNNNGC	2 cut(s)	21, 277
BstNI	CCWGG	1 cut(s)	83
BstNSI	RCATGY	1 cut(s)	230
BstSCI	CCNGG	1 cut(s)	81
BstUI	CGCG	1 cut(s)	72
BstXI	CCANNNNNNTGG	1 cut(s)	259
BsuRI	GGCC	1 cut(s)	101
BtgI	CCRYGG	1 cut(s)	252
BtsCI	GGATG	2 cut(s)	78, 262
BtsIMutI	CAGTG	2 cut(s)	148, 219
Cac8I	GCNNGC	4 cut(s)	99, 118, 228, 232
CfoI	GCGC	1 cut(s)	271
Cfr10I	RCCGGY	1 cut(s)	97
Cfr13I	GGNCC	1 cut(s)	64
CseI	GACGC	1 cut(s)	215
CviAII	CATG	2 cut(s)	227, 253
CviJI	RGCY	4 cut(s)	97, 101, 116, 309
CviKI_1	RGCY	4 cut(s)	97, 101, 116, 309
DdeI	CTNAG	1 cut(s)	222
DpnI	GATC	2 cut(s)	89, 200
DpnII	GATC	2 cut(s)	87, 198
DraIII	CACNNNGTG	1 cut(s)	170
EaeI	YGGCCR	1 cut(s)	99
Eco130I	CCWWGG	1 cut(s)	252
Eco47I	GGWCC	1 cut(s)	64
Eco88I	CYCGRG	1 cut(s)	188
EcoO109I	RGGNCCY	1 cut(s)	64
EcoRII	CCWGG	1 cut(s)	81
EcoT14I	CCWWGG	1 cut(s)	252
ErhI	CCWWGG	1 cut(s)	252
Esp3I	CGTCTC	1 cut(s)	198
FaeI	CATG	2 cut(s)	230, 256
FaiI	YATR	5 cut(s)	156, 228, 254, 267, 297
FatI	CATG	2 cut(s)	226, 252
FbaI	TGATCA	1 cut(s)	198
Fnu4HI	GCNGC	1 cut(s)	235
FokI	GGATG	2 cut(s)	65, 269
Fsp4HI	GCNGC	1 cut(s)	235
FspBI	CTAG	1 cut(s)	310
GlaI	GCGC	1 cut(s)	270
GluI	GCNGC	1 cut(s)	235
HaeIII	GGCC	1 cut(s)	101
HapII	CCGG	1 cut(s)	98
HgaI	GACGC	1 cut(s)	215
HhaI	GCGC	1 cut(s)	271
Hin1I	GRCGYC	1 cut(s)	207
Hin1II	CATG	2 cut(s)	230, 256
Hin6I	GCGC	1 cut(s)	269
HinP1I	GCGC	1 cut(s)	269
HinfI	GANTC	1 cut(s)	289
HpaII	CCGG	1 cut(s)	98
HphI	GGTGA	1 cut(s)	82
Hpy188I	TCNGA	1 cut(s)	203
Hpy188III	TCNNGA	4 cut(s)	178, 188, 190, 274
Hpy99I	CGWCG	1 cut(s)	111
HpyAV	CCTTC	1 cut(s)	31
HpyCH4III	ACNGT	2 cut(s)	59, 244
HpyF10VI	GCNNNNNNNGC	2 cut(s)	21, 277
HpyF3I	CTNAG	1 cut(s)	222
Hsp92I	GRCGYC	1 cut(s)	207
Hsp92II	CATG	2 cut(s)	230, 256
HspAI	GCGC	1 cut(s)	269
KroI	GCCGGC	1 cut(s)	97
KroNI	GCCGGC	1 cut(s)	99
Ksp22I	TGATCA	1 cut(s)	198
Kzo9I	GATC	2 cut(s)	87, 198
LmnI	GCTCC	1 cut(s)	44
LpnPI	CCDG	5 cut(s)	68, 95, 111, 266, 271
MaeI	CTAG	1 cut(s)	310
MaeIII	GTNAC	2 cut(s)	211, 244
MalI	GATC	2 cut(s)	89, 200
MboI	GATC	2 cut(s)	87, 198
MhlI	GDGCHC	1 cut(s)	177
MlyI	GAGTC	1 cut(s)	283
MnlI	CCTC	8 cut(s)	14, 35, 77, 116, 119, 151, 161, 270
MroNI	GCCGGC	1 cut(s)	97
MslI	CAYNNNNRTG	1 cut(s)	257
MspI	CCGG	1 cut(s)	98
MspR9I	CCNGG	1 cut(s)	83
MvaI	CCWGG	1 cut(s)	83
MvnI	CGCG	1 cut(s)	72
MwoI	GCNNNNNNNGC	2 cut(s)	21, 277
NaeI	GCCGGC	1 cut(s)	99
NcoI	CCATGG	1 cut(s)	252
NdeII	GATC	2 cut(s)	87, 198
NgoMIV	GCCGGC	1 cut(s)	97
NlaIII	CATG	2 cut(s)	230, 256
NmuCI	GTSAC	2 cut(s)	211, 244
NspI	RCATGY	1 cut(s)	230
PaeI	GCATGC	1 cut(s)	230
PaeR7I	CTCGAG	1 cut(s)	188
PdiI	GCCGGC	1 cut(s)	99
PkrI	GCNGC	1 cut(s)	236
PleI	GAGTC	1 cut(s)	283
PpsI	GAGTC	1 cut(s)	283
PpuMI	RGGWCCY	1 cut(s)	64
Psp5II	RGGWCCY	1 cut(s)	64
Psp6I	CCWGG	1 cut(s)	81
PspGI	CCWGG	1 cut(s)	81
PspPI	GGNCC	1 cut(s)	64
PspPPI	RGGWCCY	1 cut(s)	64
RseI	CAYNNNNRTG	1 cut(s)	257
SatI	GCNGC	1 cut(s)	235
Sau3AI	GATC	2 cut(s)	87, 198
Sau96I	GGNCC	1 cut(s)	64
SchI	GAGTC	1 cut(s)	283
ScrFI	CCNGG	1 cut(s)	83
SduI	GDGCHC	1 cut(s)	177
SetI	ASST	4 cut(s)	66, 130, 172, 218
Sfr274I	CTCGAG	1 cut(s)	188
SinI	GGWCC	1 cut(s)	64
SlaI	CTCGAG	1 cut(s)	188
SmiMI	CAYNNNNRTG	1 cut(s)	257
SmlI	CTYRAG	3 cut(s)	176, 188, 272
SmoI	CTYRAG	3 cut(s)	176, 188, 272
SphI	GCATGC	1 cut(s)	230
SsiI	CCGC	3 cut(s)	70, 235, 249
SspMI	CTAG	1 cut(s)	310
StyD4I	CCNGG	1 cut(s)	81
StyI	CCWWGG	1 cut(s)	252
TaaI	ACNGT	2 cut(s)	59, 244
TaqI	TCGA	1 cut(s)	189
TauI	GCSGC	1 cut(s)	237
TscAI	CASTG	2 cut(s)	148, 226
TseFI	GTSAC	2 cut(s)	211, 244
Tsp45I	GTSAC	2 cut(s)	211, 244
TspRI	CASTG	2 cut(s)	148, 226
VpaK11BI	GGWCC	1 cut(s)	64
XceI	RCATGY	1 cut(s)	230
XcmI	CCANNNNNNNNNTGG	1 cut(s)	109
XhoI	CTCGAG	1 cut(s)	188
XspI	CTAG	1 cut(s)	310

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.